Rmu_sc0000756.1_g000018

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000756.1
OG0019736
Physical Location & Seq
Reverse (-)
90942 .. 93748
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
atgaaaaatggaggaagagaatgggagaaaagagcagccctctctgttttatggtgcggcgctgtagaaggggcatatggaaaaataggtcgtggtctatatatatatgaggacctaaccaccgctcagagtgacctccacaacctgaaggttgtcgccggccaaatcaaatccgagaggaacgccaaagtccacgaggtctacgacaggtcgttgaagctggacgacgagctctgcgacgtagacgccatgaaagccaagttgactctggtccggaacgacatcgaggacttgagcaagtcgcggatggagctcgtgaccaaaattttgaaattcctgagatcgacgatctttgtcgatggtgtagtggctgcgagtgaagatgttggaagcgtcctccttgccggagatgagctggttgggctagaagagctggcagtaggttctggtgcggacctcgtcgatgacggtgggctcgaggtggacgaagatggggcgtgggacgtgcttgcaggcgccggtcttggagaagaaggtgttgaaggcaccgaaagtttgagaaattatataacgtctgatttggacggaatggacacgggtgatgaaattgaaaagtatgagggtgatactgatcaaattgaaactgcagggactaacatgatgtcgaccccaaacctcaaggggggtcagcatcgctgtgcaagggacggcggtgttgatgctacgttgggcctgggtggtggactggtgttttctcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.01

Weight (kDa)

4.41

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019736)

Species Orthologous Gene IDs
malus_domestica MD10G1111700.v1.1
rosa_laevigata RLG00000017705 RLG00000028352
rosa_multiflora Rmu_sc0000756.1_g000018 Rmu_sc0008633.1_g000001
rosa_rugosa Rorug04G0248800 Rorug06G0068900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 515, 545
AccBSI CCGCTC 1 cut(s) 125
AccI GTMKAC 3 cut(s) 201, 243, 665
AccII CGCG 1 cut(s) 304
AccIII TCCGGA 1 cut(s) 273
AciI CCGC 5 cut(s) 57, 123, 304, 452, 711
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 2 cut(s) 324, 332
AcuI CTGAAG 1 cut(s) 167
AcyI GRCGYC 2 cut(s) 246, 516
AfiI CCNNNNNNNGG 1 cut(s) 682
AgsI TTSAA 5 cut(s) 217, 331, 542, 611, 641
AjiI CACGTC 1 cut(s) 505
AjnI CCWGG 1 cut(s) 732
AluBI AGCT 5 cut(s) 220, 232, 313, 415, 433
AluI AGCT 5 cut(s) 220, 232, 313, 415, 433
Alw21I GWGCWC 2 cut(s) 234, 315
Ama87I CYCGRG 1 cut(s) 476
Aor13HI TCCGGA 1 cut(s) 273
AoxI GGCC 2 cut(s) 160, 730
ApeKI GCWGC 2 cut(s) 35, 371
ApoI RAATTY 2 cut(s) 324, 332
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AspLEI GCGC 2 cut(s) 62, 518
AspS9I GGNCC 4 cut(s) 112, 271, 454, 730
AsuHPI GGTGA 2 cut(s) 611, 635
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 3 cut(s) 112, 271, 454
BanI GGYRCC 2 cut(s) 515, 545
BanII GRGCYC 3 cut(s) 234, 315, 477
BauI CACGAG 2 cut(s) 194, 314
Bbv12I GWGCWC 2 cut(s) 234, 315
BbvI GCAGC 2 cut(s) 47, 358
BccI CCATC 3 cut(s) 301, 353, 485
BceAI ACGGC 1 cut(s) 724
BciT130I CCWGG 1 cut(s) 734
BclI TGATCA 1 cut(s) 631
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 2 cut(s) 63, 645
BfoI RGCGCY 2 cut(s) 63, 519
BisI GCNGC 3 cut(s) 36, 58, 372
BlsI GCNGC 3 cut(s) 37, 59, 373
Bme1390I CCNGG 1 cut(s) 734
Bme18I GGWCC 3 cut(s) 112, 271, 454
BmeT110I CYCGRG 1 cut(s) 476
BmgBI CACGTC 1 cut(s) 505
BmgT120I GGNCC 4 cut(s) 112, 271, 454, 730
BmiI GGNNCC 2 cut(s) 517, 547
BmrFI CCNGG 1 cut(s) 734
BmsI GCATC 2 cut(s) 700, 709
BoxI GACNNNNGTC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpuEI CTTGAG 2 cut(s) 313, 662
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 2 cut(s) 246, 516
BsaJI CCNNGG 1 cut(s) 733
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 682
Bse118I RCCGGY 2 cut(s) 158, 518
Bse1I ACTGG 1 cut(s) 750
Bse8I GATNNNNATC 1 cut(s) 630
BseAI TCCGGA 1 cut(s) 273
BseBI CCWGG 1 cut(s) 734
BseDI CCNNGG 1 cut(s) 733
BseGI GGATG 1 cut(s) 312
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 1 cut(s) 682
BseMII CTCAG 2 cut(s) 140, 329
BseNI ACTGG 1 cut(s) 750
BseXI GCAGC 2 cut(s) 47, 358
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 162, 732
BshNI GGYRCC 2 cut(s) 515, 545
BsiHKAI GWGCWC 2 cut(s) 234, 315
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 4 cut(s) 159, 274, 405, 519
BslFI GGGAC 3 cut(s) 515, 664, 719
BslI CCNNNNNNNGG 1 cut(s) 682
BsmFI GGGAC 3 cut(s) 515, 664, 719
BsnI GGCC 2 cut(s) 162, 732
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 234, 315, 477
Bsp13I TCCGGA 1 cut(s) 273
Bsp143I GATC 3 cut(s) 341, 348, 631
BspACI CCGC 5 cut(s) 57, 123, 304, 452, 711
BspANI GGCC 2 cut(s) 162, 732
BspCNI CTCAG 2 cut(s) 139, 330
BspEI TCCGGA 1 cut(s) 273
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 517, 547
BspMAI CTGCAG 1 cut(s) 649
BspQI GCTCTTC 1 cut(s) 423
BspT107I GGYRCC 2 cut(s) 515, 545
BsrBI CCGCTC 1 cut(s) 125
BsrFI RCCGGY 2 cut(s) 158, 518
BsrI ACTGG 1 cut(s) 750
BssAI RCCGGY 2 cut(s) 158, 518
BssECI CCNNGG 1 cut(s) 733
BssMI GATC 3 cut(s) 341, 348, 631
BssNI GRCGYC 2 cut(s) 246, 516
BssSI CACGAG 2 cut(s) 194, 314
Bst2BI CACGAG 2 cut(s) 194, 314
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 2 cut(s) 10, 423
BstACI GRCGYC 2 cut(s) 246, 516
BstC8I GCNNGC 4 cut(s) 160, 435, 510, 514
BstDEI CTNAG 2 cut(s) 126, 338
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 304
BstH2I RGCGCY 2 cut(s) 63, 519
BstHHI GCGC 2 cut(s) 62, 518
BstKTI GATC 3 cut(s) 344, 351, 634
BstMBI GATC 3 cut(s) 341, 348, 631
BstMWI GCNNNNNNNGC 4 cut(s) 254, 310, 421, 430
BstNI CCWGG 1 cut(s) 734
BstPAI GACNNNNGTC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 732
BstSFI CTRYAG 2 cut(s) 63, 645
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 47, 358
BsuRI GGCC 2 cut(s) 162, 732
BtgZI GCGATG 1 cut(s) 677
BtrI CACGTC 1 cut(s) 505
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 757
Cac8I GCNNGC 4 cut(s) 160, 435, 510, 514
CfoI GCGC 2 cut(s) 62, 518
Cfr10I RCCGGY 2 cut(s) 158, 518
Cfr13I GGNCC 4 cut(s) 112, 271, 454, 730
CseI GACGC 2 cut(s) 254, 382
CviAII CATG 2 cut(s) 250, 658
DdeI CTNAG 2 cut(s) 126, 338
DinI GGCGCC 1 cut(s) 517
DpnI GATC 3 cut(s) 343, 350, 633
DpnII GATC 3 cut(s) 341, 348, 631
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 10, 423
EarI CTCTTC 2 cut(s) 10, 423
Ecl136II GAGCTC 2 cut(s) 232, 313
Eco24I GRGCYC 3 cut(s) 234, 315, 477
Eco47I GGWCC 3 cut(s) 112, 271, 454
Eco53kI GAGCTC 2 cut(s) 232, 313
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 476
EcoICRI GAGCTC 2 cut(s) 232, 313
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 732
EcoT38I GRGCYC 3 cut(s) 234, 315, 477
EgeI GGCGCC 1 cut(s) 517
EheI GGCGCC 1 cut(s) 517
FaeI CATG 2 cut(s) 253, 661
FaqI GGGAC 3 cut(s) 515, 664, 719
FatI CATG 2 cut(s) 249, 657
FauNDI CATATG 1 cut(s) 76
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 3 cut(s) 201, 243, 665
Fnu4HI GCNGC 3 cut(s) 36, 58, 372
FokI GGATG 1 cut(s) 319
FriOI GRGCYC 3 cut(s) 234, 315, 477
Fsp4HI GCNGC 3 cut(s) 36, 58, 372
FspBI CTAG 1 cut(s) 425
GlaI GCGC 2 cut(s) 61, 517
GluI GCNGC 3 cut(s) 36, 58, 372
HaeII RGCGCY 2 cut(s) 63, 519
HaeIII GGCC 2 cut(s) 162, 732
HapII CCGG 4 cut(s) 159, 274, 405, 519
HgaI GACGC 2 cut(s) 254, 382
HhaI GCGC 2 cut(s) 62, 518
Hin1I GRCGYC 2 cut(s) 246, 516
Hin1II CATG 2 cut(s) 253, 661
Hin6I GCGC 2 cut(s) 60, 516
HinP1I GCGC 2 cut(s) 60, 516
HincII GTYRAC 2 cut(s) 264, 666
HindII GTYRAC 2 cut(s) 264, 666
HinfI GANTC 1 cut(s) 265
HpaII CCGG 4 cut(s) 159, 274, 405, 519
HphI GGTGA 2 cut(s) 611, 635
Hpy166II GTNNAC 7 cut(s) 193, 202, 244, 264, 484, 666, 743
Hpy188I TCNGA 3 cut(s) 129, 175, 577
Hpy188III TCNNGA 3 cut(s) 274, 316, 337
Hpy8I GTNNAC 7 cut(s) 193, 202, 244, 264, 484, 666, 743
Hpy99I CGWCG 4 cut(s) 230, 242, 349, 464
HpyAV CCTTC 4 cut(s) 62, 142, 527, 536
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 4 cut(s) 240, 504, 572, 725
HpyCH4V TGCA 3 cut(s) 512, 647, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 310, 421, 430
HpyF3I CTNAG 2 cut(s) 126, 338
HpySE526I ACGT 4 cut(s) 240, 504, 572, 725
Hsp92I GRCGYC 2 cut(s) 246, 516
Hsp92II CATG 2 cut(s) 253, 661
HspAI GCGC 2 cut(s) 60, 516
KasI GGCGCC 1 cut(s) 515
Kpn2I TCCGGA 1 cut(s) 273
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 3 cut(s) 341, 348, 631
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 2 cut(s) 47, 358
LweI GCATC 2 cut(s) 700, 709
MaeI CTAG 1 cut(s) 425
MaeII ACGT 4 cut(s) 240, 504, 572, 725
MaeIII GTNAC 2 cut(s) 131, 316
MalI GATC 3 cut(s) 343, 350, 633
MbiI CCGCTC 1 cut(s) 125
MboI GATC 3 cut(s) 341, 348, 631
MboII GAAGA 5 cut(s) 27, 392, 440, 500, 542
MhlI GDGCHC 3 cut(s) 234, 315, 477
MluCI AATT 5 cut(s) 324, 332, 562, 606, 636
Mly113I GGCGCC 1 cut(s) 516
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 367
MroI TCCGGA 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 696
MspI CCGG 4 cut(s) 159, 274, 405, 519
MspR9I CCNGG 1 cut(s) 734
MvaI CCWGG 1 cut(s) 734
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 4 cut(s) 254, 310, 421, 430
NaeI GCCGGC 1 cut(s) 160
NarI GGCGCC 1 cut(s) 516
NdeI CATATG 1 cut(s) 76
NdeII GATC 3 cut(s) 341, 348, 631
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 253, 661
NlaIV GGNNCC 2 cut(s) 517, 547
NmuCI GTSAC 2 cut(s) 131, 316
PaeR7I CTCGAG 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 4 cut(s) 201, 234, 474, 483
PdiI GCCGGC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 458
PkrI GCNGC 3 cut(s) 37, 59, 373
PleI GAGTC 1 cut(s) 259
PluTI GGCGCC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 112
PshAI GACNNNNGTC 1 cut(s) 269
Psp124BI GAGCTC 2 cut(s) 234, 315
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 732
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 2 cut(s) 517, 547
PspPI GGNCC 4 cut(s) 112, 271, 454, 730
PspPPI RGGWCCY 1 cut(s) 112
PspXI VCTCGAGB 1 cut(s) 476
PstI CTGCAG 1 cut(s) 649
PsyI GACNNNGTC 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 696
SacI GAGCTC 2 cut(s) 234, 315
SalI GTCGAC 1 cut(s) 664
SapI GCTCTTC 1 cut(s) 423
SatI GCNGC 3 cut(s) 36, 58, 372
Sau3AI GATC 3 cut(s) 341, 348, 631
Sau96I GGNCC 4 cut(s) 112, 271, 454, 730
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 734
SduI GDGCHC 3 cut(s) 234, 315, 477
SfaNI GCATC 2 cut(s) 700, 709
SfcI CTRYAG 2 cut(s) 63, 645
SfoI GGCGCC 1 cut(s) 517
Sfr274I CTCGAG 1 cut(s) 476
SinI GGWCC 3 cut(s) 112, 271, 454
SlaI CTCGAG 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 3 cut(s) 292, 476, 677
SmoI CTYRAG 3 cut(s) 292, 476, 677
Sse9I AATT 5 cut(s) 324, 332, 562, 606, 636
SsiI CCGC 5 cut(s) 57, 123, 304, 452, 711
SspDI GGCGCC 1 cut(s) 515
SspMI CTAG 1 cut(s) 425
SstI GAGCTC 2 cut(s) 234, 315
StyD4I CCNGG 1 cut(s) 732
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 4 cut(s) 243, 507, 575, 728
TaqI TCGA 6 cut(s) 285, 344, 357, 462, 477, 665
TasI AATT 5 cut(s) 324, 332, 562, 606, 636
TauI GCSGC 1 cut(s) 60
TseFI GTSAC 2 cut(s) 131, 316
TseI GCWGC 2 cut(s) 35, 371
Tsp45I GTSAC 2 cut(s) 131, 316
TspDTI ATGAA 3 cut(s) 17, 266, 618
TspGWI ACGGA 1 cut(s) 600
Tth111I GACNNNGTC 1 cut(s) 458
VpaK11BI GGWCC 3 cut(s) 112, 271, 454
XapI RAATTY 2 cut(s) 324, 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XhoI CTCGAG 1 cut(s) 476
XmiI GTMKAC 3 cut(s) 201, 243, 665
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.