Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000768.1

Orthogroup ID

OG0016900

Physical Location & Seq

Genomic Coordinates Reverse (-)

73073 .. 76030

Gene Structure 2958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000768.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atgtcggcccaaaaagaaagaaagaaagcaaagatgctgatgatttctgaaatgaaaagagagaaggagacatatgagaaagcaaggatgctgaaggagtacatagaaaatatcagggctgcatacaccaaggattttacaagtgaagatggtgaaaagaggcagatggcagttgctacctatcttgtcgataaactttgtctgagggctggaaatgatacggatgatgatgaaattgatattgtcgagtgctgcaaattaaaagtagagaacgtcaaaacaattccccctaacacgttggagttcaacttcctcgttaaagattcaataagatgtgaaaatactgttgacgttgagcttcctgtttacaaggcaatcgaagagttcctggctggaaagaatggtagtgaaggtctatttgacaagttggagaataccagtaaattgaatgcgcatctagagggactgatgcctggccttacaggaaaagtattccgtacatacaatgcatgcattacattggatgaaatattgaacaaagaaactccctctggagctgtttcagagaaagcaggtgtttatagccaggcaaccagggaggttgctatcatctgtaattttcagcgtactgtcgcaaggactggtactgtacggatgtactggttaaaagagtacatgagtgagttgcagggcacattgacggagctgaaaacagatttggacagggcggtaatgggattacccccactgagaaattctaatcgaaaaccaaatagaaacctgacagatatggacagggcagtaatgggattacccccactgagaaattctaatggaaaacgaaagagaatcctgaccccagaagagttagagaggacgatagctgaaacaattcagatgattgaaaaactggaacaggatatgagaacccaagagaaccagaaatacacgtcagttggaatgcccaaaatcaagtatcttgaccctaggatcgctgttgcatggtgtaagcgaaatgaagttcctattaacatgatatacaccgagtattatatgccaatgtttgagtgggcaatggatgtggatatcgacttcagattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

367

Amino Acids

42.38

Weight (kDa)

6.21

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016900)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41220
rosa_laevigata	RLG00000001192 RLG00000001193 RLG00000001200 RLG00000001202 RLG00000001203
rosa_multiflora	Rmu_sc0000768.1_g000025
rosa_roxburghii	Rroxscaffold_3G00226480 Rroxscaffold_3G00226490 Rroxscaffold_3G00226550
rosa_rugosa	Rorug07G0286300
rosa_samantha	Rh7AG441000 Rh7BG413800 Rh7CG462700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	563
Acc16I	TGCGCA	1 cut(s)	453
Acc36I	ACCTGC	1 cut(s)	563
AciI	CCGC	1 cut(s)	728
AclWI	GGATC	1 cut(s)	998
AcsI	RAATTY	2 cut(s)	754, 826
AcuI	CTGAAG	2 cut(s)	113, 1078
AfaI	GTAC	7 cut(s)	101, 499, 628, 646, 651, 659, 674
AflIII	ACRYGT	2 cut(s)	294, 948
AgsI	TTSAA	5 cut(s)	307, 327, 448, 535, 905
AjiI	CACGTC	1 cut(s)	951
AjnI	CCWGG	4 cut(s)	387, 472, 585, 593
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
AluBI	AGCT	4 cut(s)	358, 557, 706, 884
AluI	AGCT	4 cut(s)	358, 557, 706, 884
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	998
AlwNI	CAGNNNCTG	1 cut(s)	1101
AoxI	GGCC	2 cut(s)	6, 475
ApeKI	GCWGC	2 cut(s)	119, 252
ApoI	RAATTY	2 cut(s)	754, 826
Asp700I	GAANNNNTTC	1 cut(s)	891
AspA2I	CCTAGG	1 cut(s)	986
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	164
AvrII	CCTAGG	1 cut(s)	986
BaeGI	GKGCMC	1 cut(s)	695
BbvI	GCAGC	2 cut(s)	106, 239
BccI	CCATC	2 cut(s)	143, 160
BciT130I	CCWGG	4 cut(s)	389, 474, 587, 595
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	2 cut(s)	458, 987
BfuAI	ACCTGC	1 cut(s)	563
BisI	GCNGC	2 cut(s)	120, 253
BlnI	CCTAGG	1 cut(s)	986
BlsI	GCNGC	2 cut(s)	121, 254
Bme1390I	CCNGG	4 cut(s)	389, 474, 587, 595
BmgBI	CACGTC	1 cut(s)	951
BmgT120I	GGNCC	1 cut(s)	7
BmrFI	CCNGG	4 cut(s)	389, 474, 587, 595
BmsI	GCATC	4 cut(s)	24, 78, 459, 463
BpmI	CTGGAG	1 cut(s)	573
BsaJI	CCNNGG	3 cut(s)	129, 594, 986
Bse1I	ACTGG	4 cut(s)	438, 646, 665, 915
Bse3DI	GCAATG	1 cut(s)	1080
BseBI	CCWGG	4 cut(s)	389, 474, 587, 595
BseDI	CCNNGG	3 cut(s)	129, 594, 986
BseGI	GGATG	5 cut(s)	93, 229, 529, 660, 1084
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	3 cut(s)	194, 740, 812
BseNI	ACTGG	4 cut(s)	438, 646, 665, 915
BseSI	GKGCMC	1 cut(s)	695
BseXI	GCAGC	2 cut(s)	106, 239
BshFI	GGCC	2 cut(s)	8, 477
BslFI	GGGAC	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	477
BsmI	GAATGC	2 cut(s)	454, 966
BsnI	GGCC	2 cut(s)	8, 477
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp143I	GATC	1 cut(s)	990
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	2 cut(s)	8, 477
BspCNI	CTCAG	3 cut(s)	195, 741, 813
BspMI	ACCTGC	1 cut(s)	563
BspPI	GGATC	1 cut(s)	998
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	4 cut(s)	438, 646, 665, 915
BssECI	CCNNGG	3 cut(s)	129, 594, 986
BssMI	GATC	1 cut(s)	990
BssT1I	CCWWGG	2 cut(s)	129, 986
Bst2UI	CCWGG	4 cut(s)	389, 474, 587, 595
Bst4CI	ACNGT	3 cut(s)	346, 631, 649
Bst6I	CTCTTC	2 cut(s)	375, 858
BstC8I	GCNNGC	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	203, 749, 821
BstF5I	GGATG	5 cut(s)	93, 229, 529, 660, 1084
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	993
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	990
BstNI	CCWGG	4 cut(s)	389, 474, 587, 595
BstNSI	RCATGY	1 cut(s)	513
BstSCI	CCNGG	4 cut(s)	387, 472, 585, 593
BstSLI	GKGCMC	1 cut(s)	695
BstV1I	GCAGC	2 cut(s)	106, 239
BsuRI	GGCC	2 cut(s)	8, 477
BtrI	CACGTC	1 cut(s)	951
BtsCI	GGATG	5 cut(s)	93, 229, 529, 660, 1084
BtsIMutI	CAGTG	2 cut(s)	746, 818
BveI	ACCTGC	1 cut(s)	563
Cac8I	GCNNGC	1 cut(s)	511
CaiI	CAGNNNCTG	1 cut(s)	1101
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	7 cut(s)	100, 498, 627, 645, 650, 658, 673
CspCI	CAANNNNNGTGG	2 cut(s)	1062, 1097
CviAII	CATG	4 cut(s)	510, 676, 1002, 1033
CviQI	GTAC	7 cut(s)	100, 498, 627, 645, 650, 658, 673
DdeI	CTNAG	3 cut(s)	203, 749, 821
DpnI	GATC	1 cut(s)	992
DpnII	GATC	1 cut(s)	990
Eam1104I	CTCTTC	2 cut(s)	375, 858
EarI	CTCTTC	2 cut(s)	375, 858
Eco130I	CCWWGG	2 cut(s)	129, 986
Eco32I	GATATC	1 cut(s)	1087
Eco57I	CTGAAG	2 cut(s)	113, 1078
EcoRII	CCWGG	4 cut(s)	387, 472, 585, 593
EcoRV	GATATC	1 cut(s)	1087
EcoT14I	CCWWGG	2 cut(s)	129, 986
EcoT22I	ATGCAT	2 cut(s)	511, 515
ErhI	CCWWGG	2 cut(s)	129, 986
FaeI	CATG	4 cut(s)	513, 679, 1005, 1036
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	4 cut(s)	509, 675, 1001, 1032
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	120, 253
FokI	GGATG	5 cut(s)	100, 236, 536, 667, 1091
Fsp4HI	GCNGC	2 cut(s)	120, 253
FspAI	RTGCGCAY	1 cut(s)	453
FspBI	CTAG	2 cut(s)	458, 987
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	120, 253
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	8, 477
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	4 cut(s)	513, 679, 1005, 1036
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	323, 849, 1098
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	349, 367
Hpy188I	TCNGA	6 cut(s)	49, 204, 565, 897, 1097, 1103
Hpy188III	TCNNGA	4 cut(s)	458, 552, 853, 980
Hpy8I	GTNNAC	2 cut(s)	349, 367
HpyAV	CCTTC	3 cut(s)	58, 88, 404
HpyCH4III	ACNGT	3 cut(s)	346, 631, 649
HpyCH4IV	ACGT	4 cut(s)	273, 296, 351, 950
HpyCH4V	TGCA	6 cut(s)	122, 255, 509, 513, 688, 1001
HpyF3I	CTNAG	3 cut(s)	203, 749, 821
HpySE526I	ACGT	4 cut(s)	273, 296, 351, 950
Hsp92II	CATG	4 cut(s)	513, 679, 1005, 1036
HspAI	GCGC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	990
LmnI	GCTCC	2 cut(s)	554, 703
Lsp1109I	GCAGC	2 cut(s)	106, 239
LweI	GCATC	4 cut(s)	24, 78, 459, 463
MaeI	CTAG	2 cut(s)	458, 987
MaeII	ACGT	4 cut(s)	273, 296, 351, 950
MalI	GATC	1 cut(s)	992
MboI	GATC	1 cut(s)	990
MboII	GAAGA	3 cut(s)	158, 392, 875
MhlI	GDGCHC	1 cut(s)	695
MluCI	AATT	8 cut(s)	234, 257, 282, 443, 616, 754, 826, 891
MmeI	TCCRAC	3 cut(s)	279, 408, 937
MnlI	CCTC	7 cut(s)	153, 198, 323, 454, 559, 592, 867
Mph1103I	ATGCAT	2 cut(s)	511, 515
MroXI	GAANNNNTTC	1 cut(s)	891
MseI	TTAA	4 cut(s)	260, 318, 665, 1029
MspR9I	CCNGG	4 cut(s)	389, 474, 587, 595
Mva1269I	GAATGC	2 cut(s)	454, 966
MvaI	CCWGG	4 cut(s)	389, 474, 587, 595
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	1 cut(s)	990
NlaIII	CATG	4 cut(s)	513, 679, 1005, 1036
NsbI	TGCGCA	1 cut(s)	453
NsiI	ATGCAT	2 cut(s)	511, 515
NspI	RCATGY	1 cut(s)	513
PaeI	GCATGC	1 cut(s)	513
PaqCI	CACCTGC	1 cut(s)	563
PctI	GAATGC	2 cut(s)	454, 966
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	3 cut(s)	323, 849, 1098
PkrI	GCNGC	2 cut(s)	121, 254
Psp6I	CCWGG	4 cut(s)	387, 472, 585, 593
PspGI	CCWGG	4 cut(s)	387, 472, 585, 593
PspPI	GGNCC	1 cut(s)	7
PsrI	GAACNNNNNNTAC	2 cut(s)	929, 961
PstNI	CAGNNNCTG	1 cut(s)	1101
RsaI	GTAC	7 cut(s)	101, 499, 628, 646, 651, 659, 674
RsaNI	GTAC	7 cut(s)	100, 498, 627, 645, 650, 658, 673
SaqAI	TTAA	4 cut(s)	260, 318, 665, 1029
SatI	GCNGC	2 cut(s)	120, 253
Sau3AI	GATC	1 cut(s)	990
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	4 cut(s)	389, 474, 587, 595
SduI	GDGCHC	1 cut(s)	695
SfaNI	GCATC	4 cut(s)	24, 78, 459, 463
SphI	GCATGC	1 cut(s)	513
Sse9I	AATT	8 cut(s)	234, 257, 282, 443, 616, 754, 826, 891
SsiI	CCGC	1 cut(s)	728
SspI	AATATT	1 cut(s)	531
SspMI	CTAG	2 cut(s)	458, 987
StyD4I	CCNGG	4 cut(s)	387, 472, 585, 593
StyI	CCWWGG	2 cut(s)	129, 986
TaaI	ACNGT	3 cut(s)	346, 631, 649
TaiI	ACGT	4 cut(s)	276, 299, 354, 953
TaqI	TCGA	5 cut(s)	189, 246, 378, 763, 1089
TasI	AATT	8 cut(s)	234, 257, 282, 443, 616, 754, 826, 891
TatI	WGTACW	3 cut(s)	99, 657, 672
TfiI	GAWTC	3 cut(s)	323, 849, 1098
Tru1I	TTAA	4 cut(s)	260, 318, 665, 1029
Tru9I	TTAA	4 cut(s)	260, 318, 665, 1029
TscAI	CASTG	2 cut(s)	753, 825
TseI	GCWGC	2 cut(s)	119, 252
TspDTI	ATGAA	4 cut(s)	68, 246, 540, 1032
TspGWI	ACGGA	4 cut(s)	236, 485, 667, 716
TspRI	CASTG	2 cut(s)	753, 825
XapI	RAATTY	2 cut(s)	754, 826
XbaI	TCTAGA	1 cut(s)	457
XceI	RCATGY	1 cut(s)	513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1065
XmaJI	CCTAGG	1 cut(s)	986
XmnI	GAANNNNTTC	1 cut(s)	891
XspI	CTAG	2 cut(s)	458, 987
Zsp2I	ATGCAT	2 cut(s)	511, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.