DNA topoisomerase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g41220 |
| rosa_laevigata | RLG00000001192 RLG00000001193 RLG00000001200 RLG00000001202 RLG00000001203 |
| rosa_multiflora | Rmu_sc0000768.1_g000025 |
| rosa_roxburghii | Rroxscaffold_3G00226480 Rroxscaffold_3G00226490 Rroxscaffold_3G00226550 |
| rosa_rugosa | Rorug07G0286300 |
| rosa_samantha | Rh7AG441000 Rh7BG413800 Rh7CG462700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 404 |
| Acc36I | ACCTGC | 1 cut(s) | 404 |
| AcsI | RAATTY | 1 cut(s) | 595 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AfaI | GTAC | 4 cut(s) | 185, 469, 492, 500 |
| AgsI | TTSAA | 4 cut(s) | 220, 240, 293, 376 |
| AjnI | CCWGG | 3 cut(s) | 300, 434, 481 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 542, 574 |
| AluBI | AGCT | 3 cut(s) | 271, 398, 547 |
| AluI | AGCT | 3 cut(s) | 271, 398, 547 |
| Alw26I | GTCTC | 1 cut(s) | 29 |
| AoxI | GGCC | 3 cut(s) | 63, 285, 479 |
| ApoI | RAATTY | 1 cut(s) | 595 |
| AsuHPI | GGTGA | 1 cut(s) | 101 |
| BaeGI | GKGCMC | 1 cut(s) | 536 |
| BccI | CCATC | 2 cut(s) | 80, 97 |
| BciT130I | CCWGG | 3 cut(s) | 302, 436, 483 |
| BcoDI | GTCTC | 1 cut(s) | 29 |
| BfuAI | ACCTGC | 1 cut(s) | 404 |
| Bme1390I | CCNGG | 3 cut(s) | 302, 436, 483 |
| BmrFI | CCNGG | 3 cut(s) | 302, 436, 483 |
| BmsI | GCATC | 1 cut(s) | 45 |
| BpmI | CTGGAG | 1 cut(s) | 414 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 435 |
| Bse1I | ACTGG | 1 cut(s) | 506 |
| BseBI | CCWGG | 3 cut(s) | 302, 436, 483 |
| BseDI | CCNNGG | 2 cut(s) | 66, 435 |
| BseGI | GGATG | 3 cut(s) | 60, 370, 501 |
| BseMII | CTCAG | 2 cut(s) | 140, 581 |
| BseNI | ACTGG | 1 cut(s) | 506 |
| BseSI | GKGCMC | 1 cut(s) | 536 |
| BshFI | GGCC | 3 cut(s) | 65, 287, 481 |
| BsmAI | GTCTC | 1 cut(s) | 29 |
| BsnI | GGCC | 3 cut(s) | 65, 287, 481 |
| Bsp1286I | GDGCHC | 1 cut(s) | 536 |
| BspANI | GGCC | 3 cut(s) | 65, 287, 481 |
| BspCNI | CTCAG | 2 cut(s) | 141, 582 |
| BspMI | ACCTGC | 1 cut(s) | 404 |
| BsrI | ACTGG | 1 cut(s) | 506 |
| BssECI | CCNNGG | 2 cut(s) | 66, 435 |
| BssT1I | CCWWGG | 1 cut(s) | 66 |
| Bst2UI | CCWGG | 3 cut(s) | 302, 436, 483 |
| Bst4CI | ACNGT | 2 cut(s) | 259, 472 |
| Bst6I | CTCTTC | 2 cut(s) | 288, 627 |
| BstC8I | GCNNGC | 1 cut(s) | 352 |
| BstDEI | CTNAG | 2 cut(s) | 149, 590 |
| BstF5I | GGATG | 3 cut(s) | 60, 370, 501 |
| BstMAI | GTCTC | 1 cut(s) | 29 |
| BstNI | CCWGG | 3 cut(s) | 302, 436, 483 |
| BstNSI | RCATGY | 1 cut(s) | 354 |
| BstSCI | CCNGG | 3 cut(s) | 300, 434, 481 |
| BstSLI | GKGCMC | 1 cut(s) | 536 |
| BsuRI | GGCC | 3 cut(s) | 65, 287, 481 |
| BtsCI | GGATG | 3 cut(s) | 60, 370, 501 |
| BtsIMutI | CAGTG | 1 cut(s) | 587 |
| BveI | ACCTGC | 1 cut(s) | 404 |
| Cac8I | GCNNGC | 1 cut(s) | 352 |
| Csp6I | GTAC | 4 cut(s) | 184, 468, 491, 499 |
| CviAII | CATG | 2 cut(s) | 351, 517 |
| CviJI | RGCY | 8 cut(s) | 65, 155, 271, 287, 305, 398, 481, 547 |
| CviKI_1 | RGCY | 8 cut(s) | 65, 155, 271, 287, 305, 398, 481, 547 |
| CviQI | GTAC | 4 cut(s) | 184, 468, 491, 499 |
| DdeI | CTNAG | 2 cut(s) | 149, 590 |
| Eam1104I | CTCTTC | 2 cut(s) | 288, 627 |
| EarI | CTCTTC | 2 cut(s) | 288, 627 |
| Eco130I | CCWWGG | 1 cut(s) | 66 |
| Eco147I | AGGCCT | 1 cut(s) | 481 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| EcoRII | CCWGG | 3 cut(s) | 300, 434, 481 |
| EcoT14I | CCWWGG | 1 cut(s) | 66 |
| EcoT22I | ATGCAT | 2 cut(s) | 352, 356 |
| ErhI | CCWWGG | 1 cut(s) | 66 |
| FaeI | CATG | 2 cut(s) | 354, 520 |
| FaiI | YATR | 7 cut(s) | 40, 42, 177, 343, 352, 423, 518 |
| FatI | CATG | 2 cut(s) | 350, 516 |
| FauNDI | CATATG | 1 cut(s) | 40 |
| FokI | GGATG | 3 cut(s) | 67, 377, 508 |
| GsuI | CTGGAG | 1 cut(s) | 414 |
| HaeIII | GGCC | 3 cut(s) | 65, 287, 481 |
| Hin1II | CATG | 2 cut(s) | 354, 520 |
| HincII | GTYRAC | 1 cut(s) | 262 |
| HindII | GTYRAC | 1 cut(s) | 262 |
| HinfI | GANTC | 2 cut(s) | 127, 236 |
| HphI | GGTGA | 1 cut(s) | 101 |
| Hpy166II | GTNNAC | 3 cut(s) | 262, 280, 491 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 150, 406 |
| Hpy188III | TCNNGA | 1 cut(s) | 393 |
| Hpy8I | GTNNAC | 3 cut(s) | 262, 280, 491 |
| HpyAV | CCTTC | 3 cut(s) | 25, 55, 317 |
| HpyCH4III | ACNGT | 2 cut(s) | 259, 472 |
| HpyCH4IV | ACGT | 2 cut(s) | 186, 264 |
| HpyCH4V | TGCA | 4 cut(s) | 350, 354, 456, 529 |
| HpyF3I | CTNAG | 2 cut(s) | 149, 590 |
| HpySE526I | ACGT | 2 cut(s) | 186, 264 |
| Hsp92II | CATG | 2 cut(s) | 354, 520 |
| LmnI | GCTCC | 1 cut(s) | 395 |
| LweI | GCATC | 1 cut(s) | 45 |
| MaeII | ACGT | 2 cut(s) | 186, 264 |
| MboII | GAAGA | 2 cut(s) | 95, 305 |
| MhlI | GDGCHC | 1 cut(s) | 536 |
| MluCI | AATT | 3 cut(s) | 195, 457, 595 |
| MmeI | TCCRAC | 1 cut(s) | 192 |
| MnlI | CCTC | 4 cut(s) | 90, 144, 400, 433 |
| Mph1103I | ATGCAT | 2 cut(s) | 352, 356 |
| MseI | TTAA | 2 cut(s) | 231, 506 |
| MspR9I | CCNGG | 3 cut(s) | 302, 436, 483 |
| MvaI | CCWGG | 3 cut(s) | 302, 436, 483 |
| NdeI | CATATG | 1 cut(s) | 40 |
| NlaIII | CATG | 2 cut(s) | 354, 520 |
| NsiI | ATGCAT | 2 cut(s) | 352, 356 |
| NspI | RCATGY | 1 cut(s) | 354 |
| PaeI | GCATGC | 1 cut(s) | 354 |
| PaqCI | CACCTGC | 1 cut(s) | 404 |
| PceI | AGGCCT | 1 cut(s) | 481 |
| PfeI | GAWTC | 2 cut(s) | 127, 236 |
| Psp6I | CCWGG | 3 cut(s) | 300, 434, 481 |
| PspGI | CCWGG | 3 cut(s) | 300, 434, 481 |
| RsaI | GTAC | 4 cut(s) | 185, 469, 492, 500 |
| RsaNI | GTAC | 4 cut(s) | 184, 468, 491, 499 |
| SaqAI | TTAA | 2 cut(s) | 231, 506 |
| ScrFI | CCNGG | 3 cut(s) | 302, 436, 483 |
| SduI | GDGCHC | 1 cut(s) | 536 |
| SetI | ASST | 9 cut(s) | 119, 189, 267, 273, 328, 400, 418, 444, 549 |
| SfaNI | GCATC | 1 cut(s) | 45 |
| SphI | GCATGC | 1 cut(s) | 354 |
| Sse9I | AATT | 3 cut(s) | 195, 457, 595 |
| SseBI | AGGCCT | 1 cut(s) | 481 |
| SspI | AATATT | 2 cut(s) | 143, 372 |
| StuI | AGGCCT | 1 cut(s) | 481 |
| StyD4I | CCNGG | 3 cut(s) | 300, 434, 481 |
| StyI | CCWWGG | 1 cut(s) | 66 |
| TaaI | ACNGT | 2 cut(s) | 259, 472 |
| TaiI | ACGT | 2 cut(s) | 189, 267 |
| TaqI | TCGA | 1 cut(s) | 135 |
| TasI | AATT | 3 cut(s) | 195, 457, 595 |
| TatI | WGTACW | 1 cut(s) | 498 |
| TfiI | GAWTC | 2 cut(s) | 127, 236 |
| Tru1I | TTAA | 2 cut(s) | 231, 506 |
| Tru9I | TTAA | 2 cut(s) | 231, 506 |
| TscAI | CASTG | 1 cut(s) | 594 |
| TspDTI | ATGAA | 2 cut(s) | 35, 381 |
| TspGWI | ACGGA | 1 cut(s) | 508 |
| TspRI | CASTG | 1 cut(s) | 594 |
| XapI | RAATTY | 1 cut(s) | 595 |
| XceI | RCATGY | 1 cut(s) | 354 |
| Zsp2I | ATGCAT | 2 cut(s) | 352, 356 |