Rmu_sc0001034.1_g000015
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001034.1
OG0020468
Physical Location & Seq
Forward (+)
42296 .. 43865
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1254 bp
atgaagaatcagggcagggattctgaaatcacagccatgatccccgaaatgaatctttgcaggcacgagccccacgatttaccagcactggtgcttgcacggggagaactactggacagggagtggtacactgccctcatgtcttgggacaggcagtggtacttctacagtcggcgtgatttcaagtacatcaagagcactcgctccaacaggactacaagggaagggtactggaagatcacaggcaaggatcgcgcaatcaaggccccgggctccaaagctgtgattgggagaaagaggaccttgacattctacattaaaagtggagtgccgaaaccccagaagaccaactgggttcttcatgagtattatctcaccaaggcaaattctgatgagcagataggggactttgttctctgccgcttgaagcgcaaggcagacgaatctgatcatgataagcaggtctgcgatggaggtgaaactggtaccggtatggcctccaatgttgaaaatcaggctgcagcagagggtatgattgcagaagcaggagaaaacctggcattcaaggagcagggagatgctgtttgggaatctgatggcaatgagcatcaacttaaaggcttgcaaactgctccttgtggtaaagataggaatgatcttccgatctctgttgaaggtcaaactaatagctgcaattcgtctgattctgatatgaatgaagagctacgtgatgagccagaaaatctggactactcaccctttgatcaacctccgccacctcaaccgcagtcaccaaaaaagcttggcaatgtttcacacaccaccaatgcccatattgatgaatgtcgcaagaggaaagatcaatttggggataataacccttctcctactaaacagaatcatatttcaaccaatgacgttaatgaactagctagcaacactgaacctaattctaaaaatcaagctgcagatgcaattccagaggggtgttctcaaccaggagaaaatctgggatctgatccatttcagtcactggaaccactatcaataaacagagaactgagagatttttcccattacaataattctattggatgggatggtatgccaattgaaggtattgactcttctctcgcaaagttcttagatacatttattgatggaggtagcagtgacggacacaacaaagtcgcctatggattggtaaatgattgttctgcattagccattggagaaacactccaatgtagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

417

Amino Acids

46.44

Weight (kDa)

5.06

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 124 1.1e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020468)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361681
rosa_laevigata RLG00000027710
rosa_multiflora Rmu_sc0001034.1_g000015
rosa_roxburghii Rroxscaffold_4G00294820
rosa_rugosa Rorug01G0290600
rosa_samantha Rh1AG300700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 451
Acc65I GGTACC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 485
AccII CGCG 1 cut(s) 255
AciI CCGC 3 cut(s) 421, 773, 785
AclWI GGATC 4 cut(s) 34, 258, 1013, 1021
AcsI RAATTY 1 cut(s) 385
AfaI GTAC 5 cut(s) 128, 161, 188, 230, 487
AfiI CCNNNNNNNGG 1 cut(s) 1115
AgeI ACCGGT 1 cut(s) 488
AgsI TTSAA 7 cut(s) 184, 427, 509, 565, 674, 909, 1115
AjnI CCWGG 2 cut(s) 555, 997
AluBI AGCT 7 cut(s) 281, 690, 724, 802, 932, 965, 1251
AluI AGCT 7 cut(s) 281, 690, 724, 802, 932, 965, 1251
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 4 cut(s) 34, 258, 1013, 1021
AlwNI CAGNNNCTG 1 cut(s) 1033
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 2 cut(s) 264, 495
ApeKI GCWGC 4 cut(s) 518, 521, 690, 965
ApoI RAATTY 1 cut(s) 385
AsiGI ACCGGT 1 cut(s) 488
Asp718I GGTACC 1 cut(s) 485
AspLEI GCGC 2 cut(s) 257, 432
AspS9I GGNCC 2 cut(s) 265, 300
AsuC2I CCSGG 2 cut(s) 269, 270
AsuHPI GGTGA 4 cut(s) 367, 488, 747, 783
AsuNHI GCTAGC 1 cut(s) 932
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 1 cut(s) 300
BanI GGYRCC 1 cut(s) 485
BanII GRGCYC 2 cut(s) 72, 275
BarI GAAGNNNNNNTAC 2 cut(s) 1111, 1143
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 4 cut(s) 505, 533, 677, 952
BccI CCATC 5 cut(s) 464, 590, 1089, 1094, 1154
BciT130I CCWGG 2 cut(s) 557, 999
BclI TGATCA 2 cut(s) 448, 763
BcnI CCSGG 2 cut(s) 269, 270
BfaI CTAG 2 cut(s) 929, 933
BfmI CTRYAG 3 cut(s) 166, 519, 966
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 5 cut(s) 421, 519, 522, 691, 966
BlsI GCNGC 5 cut(s) 422, 520, 523, 692, 967
Bme1390I CCNGG 4 cut(s) 269, 270, 557, 999
Bme18I GGWCC 1 cut(s) 300
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 265, 300
BmiI GGNNCC 4 cut(s) 267, 274, 487, 1038
BmrFI CCNGG 4 cut(s) 269, 270, 557, 999
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 3 cut(s) 568, 616, 961
BmtI GCTAGC 1 cut(s) 936
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 350
BplI GAGNNNNNCTC 1 cut(s) 1224
BpuMI CCSGG 2 cut(s) 269, 270
BsaAI YACGTR 1 cut(s) 728
BsaJI CCNNGG 3 cut(s) 267, 268, 378
BsaWI WCCGGW 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 1 cut(s) 1115
Bse118I RCCGGY 1 cut(s) 488
Bse1I ACTGG 6 cut(s) 93, 117, 236, 356, 487, 1038
Bse3DI GCAATG 2 cut(s) 607, 814
BseBI CCWGG 2 cut(s) 557, 999
BseDI CCNNGG 3 cut(s) 267, 268, 378
BseGI GGATG 2 cut(s) 1100, 1105
BseLI CCNNNNNNNGG 1 cut(s) 1115
BseMI GCAATG 2 cut(s) 607, 814
BseMII CTCAG 1 cut(s) 1052
BseNI ACTGG 6 cut(s) 93, 117, 236, 356, 487, 1038
BseXI GCAGC 4 cut(s) 505, 533, 677, 952
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 266, 497
BshNI GGYRCC 1 cut(s) 485
BshTI ACCGGT 1 cut(s) 488
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 2 cut(s) 269, 489
BslFI GGGAC 2 cut(s) 161, 419
BslI CCNNNNNNNGG 1 cut(s) 1115
BsmFI GGGAC 2 cut(s) 161, 419
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 2 cut(s) 266, 497
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 72, 200, 275
BspACI CCGC 3 cut(s) 421, 773, 785
BspANI GGCC 2 cut(s) 266, 497
BspCNI CTCAG 1 cut(s) 1053
BspFNI CGCG 1 cut(s) 255
BspHI TCATGA 2 cut(s) 361, 451
BspLI GGNNCC 4 cut(s) 267, 274, 487, 1038
BspMAI CTGCAG 2 cut(s) 523, 970
BspMI ACCTGC 1 cut(s) 451
BspOI GCTAGC 1 cut(s) 936
BspPI GGATC 4 cut(s) 34, 258, 1013, 1021
BspQI GCTCTTC 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 485
BsrDI GCAATG 2 cut(s) 607, 814
BsrFI RCCGGY 1 cut(s) 488
BsrI ACTGG 6 cut(s) 93, 117, 236, 356, 487, 1038
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 3 cut(s) 267, 268, 378
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 557, 999
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 2 cut(s) 714, 1132
BstBAI YACGTR 1 cut(s) 728
BstC8I GCNNGC 4 cut(s) 62, 96, 623, 934
BstDEI CTNAG 2 cut(s) 1061, 1144
BstF5I GGATG 2 cut(s) 1100, 1105
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 2 cut(s) 257, 432
BstMWI GCNNNNNNNGC 4 cut(s) 252, 263, 429, 971
BstNI CCWGG 2 cut(s) 557, 999
BstSCI CCNGG 4 cut(s) 267, 268, 555, 997
BstSFI CTRYAG 3 cut(s) 166, 519, 966
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 4 cut(s) 505, 533, 677, 952
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 1013
BstYI RGATCY 1 cut(s) 1013
BsuRI GGCC 2 cut(s) 266, 497
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 2 cut(s) 1100, 1105
BtsI GCAGTG 3 cut(s) 129, 161, 1177
BtsIMutI CAGTG 6 cut(s) 86, 129, 161, 939, 1031, 1177
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 4 cut(s) 62, 96, 623, 934
CaiI CAGNNNCTG 1 cut(s) 1033
CciI TCATGA 2 cut(s) 361, 451
CfoI GCGC 2 cut(s) 257, 432
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 2 cut(s) 265, 300
Cfr9I CCCGGG 1 cut(s) 268
Csp6I GTAC 5 cut(s) 127, 160, 187, 229, 486
CspAI ACCGGT 1 cut(s) 488
CviAII CATG 4 cut(s) 37, 139, 362, 452
CviQI GTAC 5 cut(s) 127, 160, 187, 229, 486
DdeI CTNAG 2 cut(s) 1061, 1144
Eam1104I CTCTTC 2 cut(s) 714, 1132
EarI CTCTTC 2 cut(s) 714, 1132
EciI GGCGGA 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 72, 275
Eco47I GGWCC 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 268
EcoO109I RGGNCCY 2 cut(s) 265, 300
EcoRII CCWGG 2 cut(s) 555, 997
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 2 cut(s) 72, 275
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 4 cut(s) 40, 142, 365, 455
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 2 cut(s) 161, 419
FatI CATG 4 cut(s) 36, 138, 361, 451
FbaI TGATCA 2 cut(s) 448, 763
Fnu4HI GCNGC 5 cut(s) 421, 519, 522, 691, 966
FokI GGATG 2 cut(s) 1107, 1112
FriOI GRGCYC 2 cut(s) 72, 275
Fsp4HI GCNGC 5 cut(s) 421, 519, 522, 691, 966
FspBI CTAG 2 cut(s) 929, 933
GlaI GCGC 2 cut(s) 256, 431
GluI GCNGC 5 cut(s) 421, 519, 522, 691, 966
HaeIII GGCC 2 cut(s) 266, 497
HapII CCGG 2 cut(s) 269, 489
HhaI GCGC 2 cut(s) 257, 432
Hin1II CATG 4 cut(s) 40, 142, 365, 455
Hin6I GCGC 2 cut(s) 255, 430
HinP1I GCGC 2 cut(s) 255, 430
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 8 cut(s) 7, 20, 52, 443, 590, 704, 898, 1124
HpaII CCGG 2 cut(s) 269, 489
HphI GGTGA 4 cut(s) 367, 488, 747, 783
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 8 cut(s) 25, 391, 448, 595, 663, 703, 709, 1018
Hpy188III TCNNGA 5 cut(s) 193, 362, 452, 746, 980
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 4 cut(s) 218, 668, 891, 1109
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 2 cut(s) 727, 918
HpyCH4V TGCA 9 cut(s) 60, 98, 521, 539, 625, 693, 968, 974, 1220
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 263, 429, 971
HpyF3I CTNAG 2 cut(s) 1061, 1144
HpySE526I ACGT 2 cut(s) 727, 918
Hsp92II CATG 4 cut(s) 40, 142, 365, 455
HspAI GCGC 2 cut(s) 255, 430
KpnI GGTACC 1 cut(s) 489
Ksp22I TGATCA 2 cut(s) 448, 763
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 4 cut(s) 209, 278, 568, 637
Lsp1109I GCAGC 4 cut(s) 505, 533, 677, 952
LweI GCATC 3 cut(s) 568, 616, 961
MaeI CTAG 2 cut(s) 929, 933
MaeII ACGT 2 cut(s) 727, 918
MaeIII GTNAC 3 cut(s) 789, 1029, 1172
MboII GAAGA 7 cut(s) 16, 247, 350, 355, 650, 731, 1119
MfeI CAATTG 1 cut(s) 1110
MflI RGATCY 1 cut(s) 1013
MhlI GDGCHC 3 cut(s) 72, 200, 275
MluCI AATT 7 cut(s) 385, 694, 863, 949, 975, 1084, 1110
MlyI GAGTC 1 cut(s) 1118
MmeI TCCRAC 1 cut(s) 231
MseI TTAA 3 cut(s) 318, 615, 921
MslI CAYNNNNRTG 3 cut(s) 35, 837, 1243
MspI CCGG 2 cut(s) 269, 489
MspR9I CCNGG 4 cut(s) 269, 270, 557, 999
MunI CAATTG 1 cut(s) 1110
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 2 cut(s) 557, 999
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 252, 263, 429, 971
NciI CCSGG 2 cut(s) 269, 270
NheI GCTAGC 1 cut(s) 932
NlaIII CATG 4 cut(s) 40, 142, 365, 455
NlaIV GGNNCC 4 cut(s) 267, 274, 487, 1038
NmuCI GTSAC 3 cut(s) 789, 1029, 1172
PagI TCATGA 2 cut(s) 361, 451
PciSI GCTCTTC 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 560
PfeI GAWTC 7 cut(s) 7, 20, 52, 443, 590, 704, 898
PinAI ACCGGT 1 cut(s) 488
PkrI GCNGC 5 cut(s) 422, 520, 523, 692, 967
PleI GAGTC 1 cut(s) 1118
PpsI GAGTC 1 cut(s) 1118
Ppu21I YACGTR 1 cut(s) 728
PpuMI RGGWCCY 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 555, 997
PspGI CCWGG 2 cut(s) 555, 997
PspN4I GGNNCC 4 cut(s) 267, 274, 487, 1038
PspPI GGNCC 2 cut(s) 265, 300
PspPPI RGGWCCY 1 cut(s) 300
PstI CTGCAG 2 cut(s) 523, 970
PstNI CAGNNNCTG 1 cut(s) 1033
PsuI RGATCY 1 cut(s) 1013
RsaI GTAC 5 cut(s) 128, 161, 188, 230, 487
RsaNI GTAC 5 cut(s) 127, 160, 187, 229, 486
RseI CAYNNNNRTG 3 cut(s) 35, 837, 1243
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 318, 615, 921
SatI GCNGC 5 cut(s) 421, 519, 522, 691, 966
Sau96I GGNCC 2 cut(s) 265, 300
SchI GAGTC 1 cut(s) 1118
ScrFI CCNGG 4 cut(s) 269, 270, 557, 999
SduI GDGCHC 3 cut(s) 72, 200, 275
SfaNI GCATC 3 cut(s) 568, 616, 961
SfcI CTRYAG 3 cut(s) 166, 519, 966
SinI GGWCC 1 cut(s) 300
SmaI CCCGGG 1 cut(s) 270
SmiMI CAYNNNNRTG 3 cut(s) 35, 837, 1243
Sse9I AATT 7 cut(s) 385, 694, 863, 949, 975, 1084, 1110
SsiI CCGC 3 cut(s) 421, 773, 785
SspMI CTAG 2 cut(s) 929, 933
StyD4I CCNGG 4 cut(s) 267, 268, 555, 997
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 2 cut(s) 730, 921
TasI AATT 7 cut(s) 385, 694, 863, 949, 975, 1084, 1110
TatI WGTACW 1 cut(s) 186
TauI GCSGC 1 cut(s) 423
TfiI GAWTC 7 cut(s) 7, 20, 52, 443, 590, 704, 898
Tru1I TTAA 3 cut(s) 318, 615, 921
Tru9I TTAA 3 cut(s) 318, 615, 921
TscAI CASTG 6 cut(s) 93, 136, 161, 946, 1038, 1177
TseFI GTSAC 3 cut(s) 789, 1029, 1172
TseI GCWGC 4 cut(s) 518, 521, 690, 965
Tsp45I GTSAC 3 cut(s) 789, 1029, 1172
TspDTI ATGAA 7 cut(s) 17, 65, 350, 728, 732, 855, 939
TspGWI ACGGA 1 cut(s) 1191
TspMI CCCGGG 1 cut(s) 268
TspRI CASTG 6 cut(s) 93, 136, 161, 946, 1038, 1177
VpaK11BI GGWCC 1 cut(s) 300
XapI RAATTY 1 cut(s) 385
XmaI CCCGGG 1 cut(s) 268
XspI CTAG 2 cut(s) 929, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.