Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001038.1

Orthogroup ID

OG0013522

Physical Location & Seq

Genomic Coordinates Reverse (-)

56440 .. 61105

Gene Structure 4666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

atgttcggttggcttaagggtgtgaagtctctcggcagttttaagtggcgtggtgaatcatctttgacagcatcattgcttagagatgcggctcctgaggttgaattatctgcgtatggaagggcaccgagtccaagtcccggcagcgagagcccaactgggcttcttaatggcgagagtgtaaatgtggaaccaattgctgatttggacctgttctttgaaaggctgtacagctactattgtgataaaggcctctggtgtatcgtcataaagtggatagtagagcttctcagcttgggtttcaccatatgcttctctgggttcttcttattatttgttgattggaatggtcttcgtaatgcgaagtgtgggatggatgcatttcaatctggaactaagccctgtgatcttgctactgaagctcttcatcagcacccattaagccctctgacactttccaaagctataattgttggatatttgtttatattttccatttactggatcttctgttttctgaggtttttcgctcaactacgagatactttgggagtccgtcacttctatcaccacagcctccatgtcacggataatgaaattaagaccatgccatgggcatcaattctggagaaggttgtcgagctacaaagatcacagcagctttgtgtggtcaaagatctttctgctcatgatgtggttatgcgtttgatgcggaaggagaactatttaattggaatgcttaacaagggtgttcttgcttttccaatctcacagtgggtcccaggtagtggcccaactgttaaattgccctcggatggaaagcgagagcgtctaattctgacaaaaacccttgagtggactttaaattggtgcatactgcagagcatgtttgatcggaatttttgtgttagaagggactttgtatcaaatccaagaacattacagaaaagacttatggtagtggggcttgctatgcttctcctttcgccatttcttgtcatattcatgctggtatatctcttcttaaggcatgcagaacaattttataatcatccgagcactgcttcttctagaagatggtcaaatttgtcaaggtggatgtttagggaattcaatgaggtggaccacttgttcaaacacagaatcaatagcagtttggtacatgcttctgaatatttgaagcaatttccttctcctattatatccattatagcaaaattcatctcttttgtttctggtggctttgctgctattttaatcattattgcgttcctagaggaatctctgctagagggccatatatttggtcgcaacttgttctggtatgctgctgtttttggaactataacagctattagcagggctgcaattagtgatgagcttctggtccttgatccagagggggcaatgtctatggttgttcaatacacacattatatgcccaagacatggcgtggcaaagagaatactgagggtgttcggatagagtttgaatccctgtttcagtatactggaatgatgttacttgaggagatggcctctatctttctcactccatatttacttatatttgttgttccaaagcgggtggatgacattttagagtttattgcagaattcacaattgatgttgaaggtgttggtcatgtttgcagttttagtgcctttgattttcaaaaacatggtaatagaaactatgggtcacctttcaatgtacctcgctcacagaggagttctcagggtaaaatggagaaatcattcttgagtttccagagtagctatccttcgtgggacccaaatgcacaaggacatcagtttcttttaaagcttagaactttcagggagcaaaagttgcagggacaagaaactagacatgcatattctcctcagagaatgtcaccgggtagccccagtttgagaacttttggtggcatgaactatctctcaagggaaaggctacatcataatcctagaactggctatcaattaggttctctgtggttaattgatgcagatcagaagaatcatccataccttcttgattggtattacacctctgccccacaccatacaacgggttacaagagggatattctggaagaaccatttgaaggtgctgagcagcagtctgtggattggatgccacccaacttcacagacaatggagcaagatttgaagatctttgggaccatcattatgaggatcgatcacggtcttatctgggggcttctacatcagcccctttcccccgagataatgtacttcagcatcacgatactggtaatctggcacaccaaactcggagtcactggtgggctagaactggccctcatggtacacagccccagtcaagttttcttgatcctccacagtcaagtttccttgagcctcctaatttcatgtgccggccttcagataatttttatgaaaatttctcagatagaagcttagaggaacaggatgaagaacaggaacaggaacggaatgaacgacaggatgcagaacaagatgtagagcaggaacagcacttggattggaggaggaactaccataacttatctcgaactacttatatggatgacttagacttagaggcaggaaaatttaatcttcattttgatgatgtatatagtagacgtcccgaaactcccaaagatataaccaccaagcttcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016043 GO:0016236 GO:0022411 GO:0022607 GO:0033036 GO:0034497 GO:0034613 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071840 GO:0098542 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 map04136 map04137 map04138 map04140

Pfam Domains

Protein Families

APG9

Protein Analysis

892

Amino Acids

103.21

Weight (kDa)

6.18

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG9	PF04109	63 - 557	1e-166	Autophagy protein ATG9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31260
fragaria_vesca	FvH4_2g21710
malus_domestica	MD05G1199600.v1.1 MD10G1185900.v1.1
prunus_persica	Prupe.8G225400_v2.0.a1 Prupe.8G225400_v2.0.a1
pyrus_communis	pycom05g18600 pycom10g16080
rosa_chinensis	RchiOBHm_Chr6g0288391
rosa_laevigata	RLG00000012408
rosa_multiflora	Rmu_sc0001038.1_g000011
rosa_roxburghii	Rroxscaffold_7G00180100
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307100 Rh6BG313100 Rh6CG320900 Rh6DG306300
rosa_wichuraiana	Rw6G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1047
AatII	GACGTC	1 cut(s)	2641
AccB1I	GGYRCC	1 cut(s)	124
AccB7I	CCANNNNNTGG	4 cut(s)	501, 612, 788, 1449
AccI	GTMKAC	2 cut(s)	1508, 2635
AciI	CCGC	3 cut(s)	89, 712, 1585
AclWI	GGATC	4 cut(s)	512, 1388, 2211, 2357
AcsI	RAATTY	7 cut(s)	898, 1084, 1109, 1217, 1616, 2431, 2603
AcuI	CTGAAG	4 cut(s)	438, 2249, 2397, 2657
AcyI	GRCGYC	1 cut(s)	2638
AfaI	GTAC	5 cut(s)	230, 1161, 1716, 2262, 2338
AflII	CTTAAG	2 cut(s)	14, 1024
AjnI	CCWGG	1 cut(s)	781
AloI	GAACNNNNNNTCC	2 cut(s)	1115, 1147
Alw21I	GWGCWC	1 cut(s)	1061
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	4 cut(s)	512, 1388, 2211, 2357
Ama87I	CYCGRG	1 cut(s)	2250
AoxI	GGCC	6 cut(s)	250, 790, 1294, 1536, 2326, 2408
ApeKI	GCWGC	6 cut(s)	144, 658, 1247, 1328, 1364, 2122
ApoI	RAATTY	7 cut(s)	898, 1084, 1109, 1217, 1616, 2431, 2603
ArsI	GACNNNNNNTTYG	4 cut(s)	200, 232, 2290, 2322
Asp700I	GAANNNNTTC	2 cut(s)	423, 1757
AspS9I	GGNCC	9 cut(s)	208, 778, 791, 1123, 1294, 1387, 1792, 2188, 2327
AsuC2I	CCSGG	2 cut(s)	141, 1902
AsuHPI	GGTGA	5 cut(s)	65, 295, 560, 1695, 1890
AvaI	CYCGRG	1 cut(s)	2250
AvaII	GGWCC	6 cut(s)	208, 778, 1123, 1387, 1792, 2188
AxyI	CCTNAGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	1768, 1800
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	1061
BbvI	GCAGC	6 cut(s)	156, 670, 1234, 1315, 1351, 2134
BccI	CCATC	5 cut(s)	367, 809, 1071, 1528, 2199
BciT130I	CCWGG	1 cut(s)	783
BcnI	CCSGG	2 cut(s)	141, 1902
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	6 cut(s)	1071, 1274, 1289, 1869, 1971, 2319
BfmI	CTRYAG	1 cut(s)	878
BfrI	CTTAAG	2 cut(s)	14, 1024
BglII	AGATCT	2 cut(s)	676, 2179
BisI	GCNGC	7 cut(s)	90, 145, 659, 1248, 1329, 1365, 2123
BlpI	GCTNAGC	1 cut(s)	2118
BlsI	GCNGC	7 cut(s)	91, 146, 660, 1249, 1330, 1366, 2124
Bme1390I	CCNGG	3 cut(s)	141, 783, 1902
Bme18I	GGWCC	6 cut(s)	208, 778, 1123, 1387, 1792, 2188
BmeT110I	CYCGRG	1 cut(s)	2250
BmgT120I	GGNCC	9 cut(s)	208, 778, 791, 1123, 1294, 1387, 1792, 2188, 2327
BmiI	GGNNCC	8 cut(s)	93, 126, 192, 779, 780, 1793, 1794, 2189
BmrFI	CCNGG	3 cut(s)	141, 783, 1902
BmrI	ACTGGG	3 cut(s)	168, 1905, 2341
BmsI	GCATC	9 cut(s)	76, 80, 367, 626, 699, 1999, 2130, 2278, 2488
BmuI	ACTGGG	3 cut(s)	168, 1905, 2341
BpiI	GAAGAC	1 cut(s)	344
BplI	GAGNNNNNCTC	4 cut(s)	1523, 1555, 1720, 1752
BpmI	CTGGAG	1 cut(s)	647
Bpu1102I	GCTNAGC	1 cut(s)	2118
BpuEI	CTTGAG	5 cut(s)	872, 1547, 1783, 1930, 2405
BpuMI	CCSGG	2 cut(s)	141, 1902
Bsa29I	ATCGAT	1 cut(s)	2206
BsaBI	GATNNNNATC	1 cut(s)	2013
BsaHI	GRCGYC	1 cut(s)	2638
BsaJI	CCNNGG	3 cut(s)	611, 781, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	1835, 1865
Bse118I	RCCGGY	1 cut(s)	2406
Bse1I	ACTGG	9 cut(s)	163, 506, 1516, 1911, 1981, 2284, 2315, 2329, 2347
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	2 cut(s)	74, 1413
Bse8I	GATNNNNATC	1 cut(s)	2013
BseBI	CCWGG	1 cut(s)	783
BseCI	ATCGAT	1 cut(s)	2206
BseDI	CCNNGG	3 cut(s)	611, 781, 810
BseJI	GATNNNNATC	1 cut(s)	2013
BseMI	GCAATG	2 cut(s)	74, 1413
BseMII	CTCAG	8 cut(s)	87, 304, 509, 1461, 1751, 1901, 2109, 2451
BseNI	ACTGG	9 cut(s)	163, 506, 1516, 1911, 1981, 2284, 2315, 2329, 2347
BseRI	GAGGAG	4 cut(s)	1544, 1744, 1875, 2554
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	6 cut(s)	156, 670, 1234, 1315, 1351, 2134
BshFI	GGCC	6 cut(s)	252, 792, 1296, 1538, 2328, 2410
BshNI	GGYRCC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	2206
BsiHKAI	GWGCWC	1 cut(s)	1061
BsiHKCI	CYCGRG	1 cut(s)	2250
BsiSI	CCGG	3 cut(s)	141, 1901, 2407
BslFI	GGGAC	7 cut(s)	123, 764, 929, 1805, 1872, 2201, 2625
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	7 cut(s)	123, 764, 929, 1805, 1872, 2201, 2625
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	6 cut(s)	252, 792, 1296, 1538, 2328, 2410
BsoBI	CYCGRG	1 cut(s)	2250
Bsp1286I	GDGCHC	3 cut(s)	127, 155, 1061
Bsp1407I	TGTACA	1 cut(s)	228
Bsp1720I	GCTNAGC	1 cut(s)	2118
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	3 cut(s)	89, 712, 1585
BspANI	GGCC	6 cut(s)	252, 792, 1296, 1538, 2328, 2410
BspCNI	CTCAG	8 cut(s)	88, 303, 510, 1462, 1750, 1900, 2110, 2450
BspDI	ATCGAT	1 cut(s)	2206
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	8 cut(s)	93, 126, 192, 779, 780, 1793, 1794, 2189
BspMAI	CTGCAG	1 cut(s)	882
BspPI	GGATC	4 cut(s)	512, 1388, 2211, 2357
BspQI	GCTCTTC	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	124
BspTI	CTTAAG	2 cut(s)	14, 1024
BsrDI	GCAATG	2 cut(s)	74, 1413
BsrFI	RCCGGY	1 cut(s)	2406
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	9 cut(s)	163, 506, 1516, 1911, 1981, 2284, 2315, 2329, 2347
BssAI	RCCGGY	1 cut(s)	2406
BssECI	CCNNGG	3 cut(s)	611, 781, 810
BssNAI	GTATAC	1 cut(s)	1509
BssNI	GRCGYC	1 cut(s)	2638
BssT1I	CCWWGG	1 cut(s)	611
Bst1107I	GTATAC	1 cut(s)	1509
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	4 cut(s)	774, 799, 2214, 2373
Bst6I	CTCTTC	2 cut(s)	429, 1025
BstACI	GRCGYC	1 cut(s)	2638
BstAFI	CTTAAG	2 cut(s)	14, 1024
BstAPI	GCANNNNNTGC	1 cut(s)	1852
BstAUI	TGTACA	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	969, 1032, 2408
BstDSI	CCRYGG	1 cut(s)	611
BstEII	GGTNACC	1 cut(s)	1701
BstMAI	GTCTC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	6 cut(s)	150, 419, 709, 973, 1852, 2524
BstNI	CCWGG	1 cut(s)	783
BstNSI	RCATGY	4 cut(s)	889, 1034, 1166, 1877
BstPI	GGTNACC	1 cut(s)	1701
BstSCI	CCNGG	3 cut(s)	139, 781, 1900
BstSFI	CTRYAG	1 cut(s)	878
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	6 cut(s)	156, 670, 1234, 1315, 1351, 2134
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	3 cut(s)	504, 676, 2179
BstXI	CCANNNNNNTGG	1 cut(s)	1304
BstYI	RGATCY	3 cut(s)	504, 676, 2179
BstZ17I	GTATAC	1 cut(s)	1509
Bsu15I	ATCGAT	1 cut(s)	2206
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	6 cut(s)	252, 792, 1296, 1538, 2328, 2410
BsuTUI	ATCGAT	1 cut(s)	2206
BtgI	CCRYGG	1 cut(s)	611
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	3 cut(s)	779, 1059, 2308
Cac8I	GCNNGC	3 cut(s)	969, 1032, 2408
CciI	TCATGA	1 cut(s)	688
Cfr10I	RCCGGY	1 cut(s)	2406
Cfr13I	GGNCC	9 cut(s)	208, 778, 791, 1123, 1294, 1387, 1792, 2188, 2327
ClaI	ATCGAT	1 cut(s)	2206
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	5 cut(s)	229, 1160, 1715, 2261, 2337
CspCI	CAANNNNNGTGG	2 cut(s)	1569, 1604
CviQI	GTAC	5 cut(s)	229, 1160, 1715, 2261, 2337
DraI	TTTAAA	2 cut(s)	864, 1824
Eam1104I	CTCTTC	2 cut(s)	429, 1025
EarI	CTCTTC	2 cut(s)	429, 1025
Eco130I	CCWWGG	1 cut(s)	611
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	6 cut(s)	208, 778, 1123, 1387, 1792, 2188
Eco57I	CTGAAG	4 cut(s)	438, 2249, 2397, 2657
Eco81I	CCTNAGG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	2250
Eco91I	GGTNACC	1 cut(s)	1701
EcoO109I	RGGNCCY	2 cut(s)	778, 1792
EcoO65I	GGTNACC	1 cut(s)	1701
EcoRI	GAATTC	2 cut(s)	1109, 1616
EcoRII	CCWGG	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	2 cut(s)	382, 1879
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	611
FaqI	GGGAC	7 cut(s)	123, 764, 929, 1805, 1872, 2201, 2625
FauI	CCCGC	1 cut(s)	1578
FauNDI	CATATG	1 cut(s)	308
FblI	GTMKAC	2 cut(s)	1508, 2635
Fnu4HI	GCNGC	7 cut(s)	90, 145, 659, 1248, 1329, 1365, 2123
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	7 cut(s)	90, 145, 659, 1248, 1329, 1365, 2123
FspBI	CTAG	6 cut(s)	1071, 1274, 1289, 1869, 1971, 2319
GluI	GCNGC	7 cut(s)	90, 145, 659, 1248, 1329, 1365, 2123
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	6 cut(s)	252, 792, 1296, 1538, 2328, 2410
HapII	CCGG	3 cut(s)	141, 1901, 2407
HgaI	GACGC	1 cut(s)	818
Hin1I	GRCGYC	1 cut(s)	2638
HindIII	AAGCTT	3 cut(s)	1826, 2446, 2669
HinfI	GANTC	8 cut(s)	56, 130, 552, 1143, 1280, 1493, 2023, 2305
HpaII	CCGG	3 cut(s)	141, 1901, 2407
HphI	GGTGA	5 cut(s)	65, 295, 560, 1695, 1890
Hpy166II	GTNNAC	5 cut(s)	858, 1123, 1509, 2339, 2636
Hpy8I	GTNNAC	5 cut(s)	858, 1123, 1509, 2339, 2636
HpyCH4III	ACNGT	4 cut(s)	774, 799, 2214, 2373
HpyCH4IV	ACGT	1 cut(s)	2638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	150, 419, 709, 973, 1852, 2524
HpySE526I	ACGT	1 cut(s)	2638
Hsp92I	GRCGYC	1 cut(s)	2638
KflI	GGGWCCC	2 cut(s)	778, 1792
KroI	GCCGGC	1 cut(s)	2406
KroNI	GCCGGC	1 cut(s)	2408
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	3 cut(s)	97, 1843, 2165
Lsp1109I	GCAGC	6 cut(s)	156, 670, 1234, 1315, 1351, 2134
LweI	GCATC	9 cut(s)	76, 80, 367, 626, 699, 1999, 2130, 2278, 2488
MaeI	CTAG	6 cut(s)	1071, 1274, 1289, 1869, 1971, 2319
MaeII	ACGT	1 cut(s)	2638
MaeIII	GTNAC	7 cut(s)	557, 583, 1521, 1701, 1896, 2078, 2306
MfeI	CAATTG	2 cut(s)	195, 1623
MflI	RGATCY	3 cut(s)	504, 676, 2179
MhlI	GDGCHC	3 cut(s)	127, 155, 1061
MlyI	GAGTC	3 cut(s)	139, 561, 2314
MmeI	TCCRAC	1 cut(s)	454
Mph1103I	ATGCAT	2 cut(s)	382, 1879
MroNI	GCCGGC	1 cut(s)	2406
MroXI	GAANNNNTTC	2 cut(s)	423, 1757
MslI	CAYNNNNRTG	3 cut(s)	1004, 2196, 2619
MspCI	CTTAAG	2 cut(s)	14, 1024
MspI	CCGG	3 cut(s)	141, 1901, 2407
MspR9I	CCNGG	3 cut(s)	141, 783, 1902
MunI	CAATTG	2 cut(s)	195, 1623
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	1 cut(s)	783
MwoI	GCNNNNNNNGC	6 cut(s)	150, 419, 709, 973, 1852, 2524
NaeI	GCCGGC	1 cut(s)	2408
NciI	CCSGG	2 cut(s)	141, 1902
NcoI	CCATGG	1 cut(s)	611
NdeI	CATATG	1 cut(s)	308
NgoMIV	GCCGGC	1 cut(s)	2406
NlaIV	GGNNCC	8 cut(s)	93, 126, 192, 779, 780, 1793, 1794, 2189
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	5 cut(s)	557, 583, 1701, 1896, 2306
NsiI	ATGCAT	2 cut(s)	382, 1879
NspI	RCATGY	4 cut(s)	889, 1034, 1166, 1877
PaeI	GCATGC	1 cut(s)	1034
PagI	TCATGA	1 cut(s)	688
PceI	AGGCCT	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	2488
PctI	GAATGC	1 cut(s)	741
PdiI	GCCGGC	1 cut(s)	2408
PdmI	GAANNNNTTC	2 cut(s)	423, 1757
PfeI	GAWTC	5 cut(s)	56, 1143, 1280, 1493, 2023
PflMI	CCANNNNNTGG	4 cut(s)	501, 612, 788, 1449
PkrI	GCNGC	7 cut(s)	91, 146, 660, 1249, 1330, 1366, 2124
PleI	GAGTC	3 cut(s)	138, 560, 2313
PpsI	GAGTC	3 cut(s)	138, 560, 2313
PpuMI	RGGWCCY	2 cut(s)	778, 1792
PsiI	TTATAA	1 cut(s)	1047
Psp5II	RGGWCCY	2 cut(s)	778, 1792
Psp6I	CCWGG	1 cut(s)	781
PspEI	GGTNACC	1 cut(s)	1701
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	8 cut(s)	93, 126, 192, 779, 780, 1793, 1794, 2189
PspPI	GGNCC	9 cut(s)	208, 778, 791, 1123, 1294, 1387, 1792, 2188, 2327
PspPPI	RGGWCCY	2 cut(s)	778, 1792
PstI	CTGCAG	1 cut(s)	882
PsuI	RGATCY	3 cut(s)	504, 676, 2179
RsaI	GTAC	5 cut(s)	230, 1161, 1716, 2262, 2338
RsaNI	GTAC	5 cut(s)	229, 1160, 1715, 2261, 2337
RseI	CAYNNNNRTG	3 cut(s)	1004, 2196, 2619
SapI	GCTCTTC	1 cut(s)	429
SatI	GCNGC	7 cut(s)	90, 145, 659, 1248, 1329, 1365, 2123
Sau96I	GGNCC	9 cut(s)	208, 778, 791, 1123, 1294, 1387, 1792, 2188, 2327
SchI	GAGTC	3 cut(s)	139, 561, 2314
ScrFI	CCNGG	3 cut(s)	141, 783, 1902
SduI	GDGCHC	3 cut(s)	127, 155, 1061
SfaNI	GCATC	9 cut(s)	76, 80, 367, 626, 699, 1999, 2130, 2278, 2488
SfcI	CTRYAG	1 cut(s)	878
SinI	GGWCC	6 cut(s)	208, 778, 1123, 1387, 1792, 2188
SmiMI	CAYNNNNRTG	3 cut(s)	1004, 2196, 2619
SmlI	CTYRAG	7 cut(s)	14, 851, 1024, 1526, 1762, 1945, 2384
SmoI	CTYRAG	7 cut(s)	14, 851, 1024, 1526, 1762, 1945, 2384
SphI	GCATGC	1 cut(s)	1034
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	3 cut(s)	89, 712, 1585
SspI	AATATT	1 cut(s)	1175
SspMI	CTAG	6 cut(s)	1071, 1274, 1289, 1869, 1971, 2319
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	139, 781, 1900
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	4 cut(s)	774, 799, 2214, 2373
TaiI	ACGT	1 cut(s)	2641
TaqI	TCGA	3 cut(s)	639, 2206, 2563
TatI	WGTACW	2 cut(s)	228, 2260
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	5 cut(s)	56, 1143, 1280, 1493, 2023
TscAI	CASTG	3 cut(s)	779, 1066, 2315
TseFI	GTSAC	5 cut(s)	557, 583, 1701, 1896, 2306
TseI	GCWGC	6 cut(s)	144, 658, 1247, 1328, 1364, 2122
Tsp45I	GTSAC	5 cut(s)	557, 583, 1701, 1896, 2306
TspGWI	ACGGA	3 cut(s)	545, 602, 2497
TspRI	CASTG	3 cut(s)	779, 1066, 2315
Van91I	CCANNNNNTGG	4 cut(s)	501, 612, 788, 1449
Vha464I	CTTAAG	2 cut(s)	14, 1024
VpaK11BI	GGWCC	6 cut(s)	208, 778, 1123, 1387, 1792, 2188
XapI	RAATTY	7 cut(s)	898, 1084, 1109, 1217, 1616, 2431, 2603
XbaI	TCTAGA	1 cut(s)	1070
XceI	RCATGY	4 cut(s)	889, 1034, 1166, 1877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XmiI	GTMKAC	2 cut(s)	1508, 2635
XmnI	GAANNNNTTC	2 cut(s)	423, 1757
XspI	CTAG	6 cut(s)	1071, 1274, 1289, 1869, 1971, 2319
ZraI	GACGTC	1 cut(s)	2639
Zsp2I	ATGCAT	2 cut(s)	382, 1879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.