Rmu_sc0001167.1_g000025

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001167.1
OG0020729
Physical Location & Seq
Forward (+)
108095 .. 113908
5814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001167.1_g000025.1.cds

Sequence Viewer

Length: 1272 bp
atggccggagatcgaagagggttaaggaacagcgacagcgtagctttaggggtcatgtgcggtggttcggcgatctcaatagagggcggagtggctgggttttgttctccatcgcctaggctatattttggtggtggcggtgccaaaagtcgacggccggaagtcgagctttccggagtgacagagagaagtgcattgtgttctatggcttttgagcaaaaacacaagcctggcaatgctgagtcttgtgacgacgtcttcagcatctcttcaattgacactcatttgaaagcgaggaggaggaggtgtggggatttgggagcgaggaggaggagatttgggaatttgggtcgtgcatgcagtttctcaggtgtgattccattttcagttggtaatcttaagcagctcaattatttgaacctttcaaacaatagatttactggtccaatccctgcttccttgacaaacctcacccaacttacatatttgtcactttcttacaataatcatagtgctaatcccttgtcttgggttggtaagcaaaccaatcttggtcttctagaacttgaccgcatcaatttaagtggttacatcccgtcttctcttagcaacctcacagagctcaagtatctttatcttcgtggtaatgagctaaccggccggtccaatcccatcttcgttaggcggcgaagccaggtggcgaagtcaggcggcgaagcaggtggtgactccggcgacgaagaggaactgctgagtgttagtagtatactgacccccaaaacgaagccccaggtctctaccgacgaagccttatccaattccgaggaggaggagccgatcaacgacgaggacaactcccacggctccgatgacgaggccgcgccggtcgagaacgacgatgactttgaagaagaggatggagataatgaagtgagcaaacgcgagaaggccaagctagtatactactgggagtcagtatattactggggtcagtatactactgggggtcagttcactactgagggtcagtgcacaaatatggcaaggatgaaggctgctgcaatagacaaagacgatgtaccggttggaacaaagaagatgagagcacagagaccagattacatacagtataagtgtaatctgcatgcattgtgggctaccattgacacccaccgaacaacgattggaaaagaggctttggggaagctaaagaagacaccgttctgggggttcattaagccattttatgaagaggagatcaagaaggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

423

Amino Acids

46.64

Weight (kDa)

6.0

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020729)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001167.1_g000025
rosa_roxburghii Rroxscaffold_2G00135210 Rroxscaffold_3G00238660
rosa_samantha Rh2CG175700 Rh4AG273400 Rh4BG279000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 710
AatII GACGTC 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 710
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 4 cut(s) 151, 766, 960, 995
AccII CGCG 2 cut(s) 881, 942
AccIII TCCGGA 1 cut(s) 173
AciI CCGC 7 cut(s) 60, 87, 138, 571, 685, 711, 879
AcoI YGGCCR 3 cut(s) 3, 155, 658
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 1080
AfiI CCNNNNNNNGG 2 cut(s) 528, 1226
AflII CTTAAG 1 cut(s) 398
AgeI ACCGGT 1 cut(s) 1081
AgsI TTSAA 5 cut(s) 273, 289, 418, 426, 908
AjnI CCWGG 3 cut(s) 229, 693, 789
AjuI GAANNNNNNNTTGG 4 cut(s) 439, 471, 659, 691
AluBI AGCT 7 cut(s) 44, 169, 406, 622, 652, 955, 1207
AluI AGCT 7 cut(s) 44, 169, 406, 622, 652, 955, 1207
Alw21I GWGCWC 3 cut(s) 624, 1034, 1108
Alw26I GTCTC 2 cut(s) 799, 1105
Alw44I GTGCAC 1 cut(s) 1030
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 5 cut(s) 3, 155, 658, 876, 948
ApaLI GTGCAC 1 cut(s) 1030
ApeKI GCWGC 3 cut(s) 403, 1055, 1058
ApoI RAATTY 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 887, 919
AsiGI ACCGGT 1 cut(s) 1081
AspA2I CCTAGG 1 cut(s) 116
AspLEI GCGC 1 cut(s) 883
AspS9I GGNCC 2 cut(s) 443, 663
AsuHPI GGTGA 2 cut(s) 463, 737
AvaII GGWCC 2 cut(s) 443, 663
AvrII CCTAGG 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 1034
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 624
BbsI GAAGAC 4 cut(s) 250, 548, 591, 1220
Bbv12I GWGCWC 3 cut(s) 624, 1034, 1108
BbvI GCAGC 3 cut(s) 415, 1042, 1045
BccI CCATC 3 cut(s) 118, 680, 911
BceAI ACGGC 2 cut(s) 170, 877
BciT130I CCWGG 3 cut(s) 231, 695, 791
BcoDI GTCTC 2 cut(s) 799, 1105
BfaI CTAG 3 cut(s) 117, 560, 956
BfrI CTTAAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 710
BisI GCNGC 6 cut(s) 404, 686, 712, 879, 1056, 1059
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 6 cut(s) 405, 687, 713, 880, 1057, 1060
Bme1390I CCNGG 3 cut(s) 231, 695, 791
Bme18I GGWCC 2 cut(s) 443, 663
BmgT120I GGNCC 2 cut(s) 443, 663
BmiI GGNNCC 3 cut(s) 142, 834, 865
BmrFI CCNGG 3 cut(s) 231, 695, 791
BmrI ACTGGG 3 cut(s) 976, 994, 1011
BmsI GCATC 2 cut(s) 273, 582
BmuI ACTGGG 3 cut(s) 976, 994, 1011
BpiI GAAGAC 4 cut(s) 250, 548, 591, 1220
BplI GAGNNNNNCTC 2 cut(s) 839, 871
BpuEI CTTGAG 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 2 cut(s) 799, 1105
BsaJI CCNNGG 4 cut(s) 116, 789, 822, 859
BsaWI WCCGGW 2 cut(s) 173, 1081
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 2 cut(s) 528, 1226
Bse118I RCCGGY 4 cut(s) 656, 660, 883, 1081
Bse1I ACTGG 4 cut(s) 445, 971, 989, 1006
Bse3DI GCAATG 1 cut(s) 241
BseAI TCCGGA 1 cut(s) 173
BseBI CCWGG 3 cut(s) 231, 695, 791
BseDI CCNNGG 4 cut(s) 116, 789, 822, 859
BseGI GGATG 3 cut(s) 591, 922, 1053
BseLI CCNNNNNNNGG 2 cut(s) 528, 1226
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 4 cut(s) 231, 381, 743, 1011
BseNI ACTGG 4 cut(s) 445, 971, 989, 1006
BseSI GKGCMC 1 cut(s) 1034
BseX3I CGGCCG 2 cut(s) 155, 658
BseXI GCAGC 3 cut(s) 415, 1042, 1045
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 2 cut(s) 881, 942
Bsh1285I CGRYCG 3 cut(s) 158, 661, 888
BshFI GGCC 5 cut(s) 5, 157, 660, 878, 950
BshNI GGYRCC 1 cut(s) 140
BshTI ACCGGT 1 cut(s) 1081
BsiEI CGRYCG 3 cut(s) 158, 661, 888
BsiHKAI GWGCWC 3 cut(s) 624, 1034, 1108
BsiSI CCGG 8 cut(s) 6, 158, 174, 657, 661, 732, 884, 1082
BslI CCNNNNNNNGG 2 cut(s) 528, 1226
BsmAI GTCTC 2 cut(s) 799, 1105
BsnI GGCC 5 cut(s) 5, 157, 660, 878, 950
Bso31I GGTCTC 2 cut(s) 799, 1105
Bsp1286I GDGCHC 3 cut(s) 624, 1034, 1108
Bsp13I TCCGGA 1 cut(s) 173
Bsp143I GATC 4 cut(s) 10, 72, 837, 1257
BspACI CCGC 7 cut(s) 60, 87, 138, 571, 685, 711, 879
BspANI GGCC 5 cut(s) 5, 157, 660, 878, 950
BspCNI CTCAG 4 cut(s) 232, 380, 744, 1012
BspEI TCCGGA 1 cut(s) 173
BspFNI CGCG 2 cut(s) 881, 942
BspLI GGNNCC 3 cut(s) 142, 834, 865
BspMI ACCTGC 1 cut(s) 710
BspT107I GGYRCC 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 398
BspTNI GGTCTC 2 cut(s) 799, 1105
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 4 cut(s) 656, 660, 883, 1081
BsrI ACTGG 4 cut(s) 445, 971, 989, 1006
BssAI RCCGGY 4 cut(s) 656, 660, 883, 1081
BssECI CCNNGG 4 cut(s) 116, 789, 822, 859
BssMI GATC 4 cut(s) 10, 72, 837, 1257
BssNAI GTATAC 3 cut(s) 767, 961, 996
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 116
Bst1107I GTATAC 3 cut(s) 767, 961, 996
Bst2UI CCWGG 3 cut(s) 231, 695, 791
Bst4CI ACNGT 2 cut(s) 1128, 1221
Bst6I CTCTTC 5 cut(s) 10, 274, 735, 906, 1245
BstACI GRCGYC 1 cut(s) 255
BstAFI CTTAAG 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 358, 1146
BstDEI CTNAG 5 cut(s) 240, 367, 605, 752, 1020
BstDSI CCRYGG 1 cut(s) 859
BstF5I GGATG 3 cut(s) 591, 922, 1053
BstFNI CGCG 2 cut(s) 881, 942
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 4 cut(s) 13, 75, 840, 1260
BstMAI GTCTC 2 cut(s) 799, 1105
BstMBI GATC 4 cut(s) 10, 72, 837, 1257
BstMCI CGRYCG 3 cut(s) 158, 661, 888
BstMWI GCNNNNNNNGC 1 cut(s) 1154
BstNI CCWGG 3 cut(s) 231, 695, 791
BstNSI RCATGY 2 cut(s) 360, 1148
BstSCI CCNGG 3 cut(s) 229, 693, 789
BstSLI GKGCMC 1 cut(s) 1034
BstUI CGCG 2 cut(s) 881, 942
BstV1I GCAGC 3 cut(s) 415, 1042, 1045
BstV2I GAAGAC 4 cut(s) 250, 548, 591, 1220
BstZ17I GTATAC 3 cut(s) 767, 961, 996
BstZI CGGCCG 2 cut(s) 155, 658
BsuRI GGCC 5 cut(s) 5, 157, 660, 878, 950
BtgI CCRYGG 1 cut(s) 859
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 3 cut(s) 591, 922, 1053
BtsIMutI CAGTG 1 cut(s) 1034
BveI ACCTGC 1 cut(s) 710
Cac8I GCNNGC 2 cut(s) 358, 1146
CfoI GCGC 1 cut(s) 883
Cfr10I RCCGGY 4 cut(s) 656, 660, 883, 1081
Cfr13I GGNCC 2 cut(s) 443, 663
Csp6I GTAC 1 cut(s) 1079
CspAI ACCGGT 1 cut(s) 1081
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviAII CATG 3 cut(s) 55, 357, 1145
CviQI GTAC 1 cut(s) 1079
DdeI CTNAG 5 cut(s) 240, 367, 605, 752, 1020
DpnI GATC 4 cut(s) 12, 74, 839, 1259
DpnII GATC 4 cut(s) 10, 72, 837, 1257
EaeI YGGCCR 3 cut(s) 3, 155, 658
EagI CGGCCG 2 cut(s) 155, 658
Eam1104I CTCTTC 5 cut(s) 10, 274, 735, 906, 1245
EarI CTCTTC 5 cut(s) 10, 274, 735, 906, 1245
EciI GGCGGA 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 622
EclXI CGGCCG 2 cut(s) 155, 658
Eco130I CCWWGG 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 624
Eco31I GGTCTC 2 cut(s) 799, 1105
Eco47I GGWCC 2 cut(s) 443, 663
Eco52I CGGCCG 2 cut(s) 155, 658
Eco53kI GAGCTC 1 cut(s) 622
Eco57I CTGAAG 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 622
EcoRII CCWGG 3 cut(s) 229, 693, 789
EcoT14I CCWWGG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 1150
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 3 cut(s) 58, 360, 1148
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 3 cut(s) 54, 356, 1144
FblI GTMKAC 4 cut(s) 151, 766, 960, 995
Fnu4HI GCNGC 6 cut(s) 404, 686, 712, 879, 1056, 1059
FokI GGATG 3 cut(s) 578, 929, 1060
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 6 cut(s) 404, 686, 712, 879, 1056, 1059
FspBI CTAG 3 cut(s) 117, 560, 956
GlaI GCGC 1 cut(s) 882
GluI GCNGC 6 cut(s) 404, 686, 712, 879, 1056, 1059
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 5 cut(s) 5, 157, 660, 878, 950
HapII CCGG 8 cut(s) 6, 158, 174, 657, 661, 732, 884, 1082
HhaI GCGC 1 cut(s) 883
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 3 cut(s) 58, 360, 1148
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HinfI GANTC 4 cut(s) 242, 376, 728, 971
HpaII CCGG 8 cut(s) 6, 158, 174, 657, 661, 732, 884, 1082
HphI GGTGA 2 cut(s) 463, 737
Hpy166II GTNNAC 6 cut(s) 152, 767, 961, 996, 1014, 1032
Hpy188I TCNGA 2 cut(s) 823, 868
Hpy188III TCNNGA 4 cut(s) 174, 560, 889, 1261
Hpy8I GTNNAC 6 cut(s) 152, 767, 961, 996, 1014, 1032
Hpy99I CGWCG 6 cut(s) 156, 257, 740, 806, 848, 899
HpyAV CCTTC 3 cut(s) 940, 1045, 1258
HpyCH4III ACNGT 2 cut(s) 1128, 1221
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 7 cut(s) 194, 356, 360, 1032, 1061, 1144, 1148
HpyF10VI GCNNNNNNNGC 1 cut(s) 1154
HpyF3I CTNAG 5 cut(s) 240, 367, 605, 752, 1020
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 3 cut(s) 58, 360, 1148
HspAI GCGC 1 cut(s) 881
Kpn2I TCCGGA 1 cut(s) 173
Kzo9I GATC 4 cut(s) 10, 72, 837, 1257
LmnI GCTCC 3 cut(s) 320, 832, 869
Lsp1109I GCAGC 3 cut(s) 415, 1042, 1045
LweI GCATC 2 cut(s) 273, 582
MaeI CTAG 3 cut(s) 117, 560, 956
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 5 cut(s) 178, 248, 489, 587, 725
MalI GATC 4 cut(s) 12, 74, 839, 1259
MboI GATC 4 cut(s) 10, 72, 837, 1257
MfeI CAATTG 1 cut(s) 273
MhlI GDGCHC 3 cut(s) 624, 1034, 1108
MluCI AATT 5 cut(s) 273, 343, 409, 577, 817
MlyI GAGTC 3 cut(s) 251, 722, 980
MmeI TCCRAC 1 cut(s) 1066
Mph1103I ATGCAT 1 cut(s) 1150
MroI TCCGGA 1 cut(s) 173
MseI TTAA 4 cut(s) 23, 399, 581, 1236
MslI CAYNNNNRTG 1 cut(s) 1037
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 8 cut(s) 6, 158, 174, 657, 661, 732, 884, 1082
MspR9I CCNGG 3 cut(s) 231, 695, 791
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 3 cut(s) 231, 695, 791
MvnI CGCG 2 cut(s) 881, 942
MwoI GCNNNNNNNGC 1 cut(s) 1154
NdeII GATC 4 cut(s) 10, 72, 837, 1257
NlaIII CATG 3 cut(s) 58, 360, 1148
NlaIV GGNNCC 3 cut(s) 142, 834, 865
NmuCI GTSAC 4 cut(s) 178, 248, 489, 725
NsiI ATGCAT 1 cut(s) 1150
NspI RCATGY 2 cut(s) 360, 1148
PaeI GCATGC 2 cut(s) 360, 1148
PaqCI CACCTGC 1 cut(s) 710
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PfeI GAWTC 1 cut(s) 376
PflFI GACNNNGTC 1 cut(s) 254
PinAI ACCGGT 1 cut(s) 1081
PkrI GCNGC 6 cut(s) 405, 687, 713, 880, 1057, 1060
PleI GAGTC 3 cut(s) 250, 722, 979
PpsI GAGTC 3 cut(s) 250, 722, 979
Psp124BI GAGCTC 1 cut(s) 624
Psp6I CCWGG 3 cut(s) 229, 693, 789
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 3 cut(s) 229, 693, 789
PspN4I GGNNCC 3 cut(s) 142, 834, 865
PspPI GGNCC 2 cut(s) 443, 663
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 1 cut(s) 1080
RsaNI GTAC 1 cut(s) 1079
RseI CAYNNNNRTG 1 cut(s) 1037
SacI GAGCTC 1 cut(s) 624
SalI GTCGAC 1 cut(s) 150
SaqAI TTAA 4 cut(s) 23, 399, 581, 1236
SatI GCNGC 6 cut(s) 404, 686, 712, 879, 1056, 1059
Sau3AI GATC 4 cut(s) 10, 72, 837, 1257
Sau96I GGNCC 2 cut(s) 443, 663
SchI GAGTC 3 cut(s) 251, 722, 980
ScrFI CCNGG 3 cut(s) 231, 695, 791
SduI GDGCHC 3 cut(s) 624, 1034, 1108
SfaNI GCATC 2 cut(s) 273, 582
SinI GGWCC 2 cut(s) 443, 663
SmiMI CAYNNNNRTG 1 cut(s) 1037
SmlI CTYRAG 2 cut(s) 398, 623
SmoI CTYRAG 2 cut(s) 398, 623
SphI GCATGC 2 cut(s) 360, 1148
Sse9I AATT 5 cut(s) 273, 343, 409, 577, 817
SsiI CCGC 7 cut(s) 60, 87, 138, 571, 685, 711, 879
SspMI CTAG 3 cut(s) 117, 560, 956
SstI GAGCTC 1 cut(s) 624
StyD4I CCNGG 3 cut(s) 229, 693, 789
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 1128, 1221
TaiI ACGT 1 cut(s) 258
TaqI TCGA 4 cut(s) 13, 151, 165, 888
TasI AATT 5 cut(s) 273, 343, 409, 577, 817
TauI GCSGC 3 cut(s) 688, 714, 881
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 4 cut(s) 23, 399, 581, 1236
Tru9I TTAA 4 cut(s) 23, 399, 581, 1236
TscAI CASTG 1 cut(s) 1034
TseFI GTSAC 4 cut(s) 178, 248, 489, 725
TseI GCWGC 3 cut(s) 403, 1055, 1058
Tsp45I GTSAC 4 cut(s) 178, 248, 489, 725
TspDTI ATGAA 4 cut(s) 942, 1064, 1222, 1263
TspRI CASTG 1 cut(s) 1034
Tth111I GACNNNGTC 1 cut(s) 254
Vha464I CTTAAG 1 cut(s) 398
VneI GTGCAC 1 cut(s) 1030
VpaK11BI GGWCC 2 cut(s) 443, 663
XapI RAATTY 1 cut(s) 343
XbaI TCTAGA 1 cut(s) 559
XceI RCATGY 2 cut(s) 360, 1148
XmaJI CCTAGG 1 cut(s) 116
XmiI GTMKAC 4 cut(s) 151, 766, 960, 995
XspI CTAG 3 cut(s) 117, 560, 956
ZraI GACGTC 1 cut(s) 256
Zsp2I ATGCAT 1 cut(s) 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.