Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001169.1

Orthogroup ID

OG0019305

Physical Location & Seq

Genomic Coordinates Reverse (-)

88297 .. 91464

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001169.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atgctgcaactgggtcaatcatcagtccttccacatccaattgataatgattctcatgacagaattgttctttgcatccgtacactatgcaataaagatgaagaagtgaagaagatatggttaaaatcttgtagagagagctttgttaaaatgcttgaagataagaagcttcgggaaatagaggaaagtagagctatggcgcagatatcaaatgcacaaccagatgaccttattgatttctaccatcttaagagcagaaagggtatgagccagcttgagttggaagatgaggttcaagatgatctcaaacgtgctactggagagtttgtaaaggatggagatgatgcaaataaactcaaccgcattcttcagctcacaggattcagcgatcctgtttatgctgaagcctatgttacagttaatcattatgacattgttctcgatgttaccgtcatcaaccaaaccaagggaacgcttcagaatttatgcttggagttggccacgatgggcgatcttaaacttgttgagcgtcctcagaactatacactagctccagaatcaaccaaacagataaaggcaaacattaaggtctcctcaactgaaacaggagttatatttggtaacattgtttatgagacgtcaaatgtgcttgagagaacagttattgttcttaatgacatccatattgatataatggattacatctctccttcttcatgtgctgatgtgttgtttcggacaatgtgggctgagtttgaatgggaaataaggtacgttagagttgctataagtactgttatcaaagacgagaaggactttctgaaccacatcgttaaagcaactaacatgaagtgcctgactccaccatcggcactggaaggagagtgtggagtcctcgctgccaatctgtatgcaaagagtgttttcggggaggatgctttggtgaatgtgagtgttgagaaacaagccgatggtaagctaagtggatacatcagaattagaagcaagactcaaggtattgcactgagtcttggggacaagatcaccttgaaacagaagggcggcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

356

Amino Acids

39.98

Weight (kDa)

5.27

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019305)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G018100_v2.0.a1
rosa_multiflora	Rmu_co8391663.1_g000001 Rmu_sc0001169.1_g000013 Rmu_sc0034979.1_g000001
rosa_samantha	Rh2BG489000 Rh2BG489100 Rh2DG498000 Rh2DG498100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	641
AciI	CCGC	2 cut(s)	361, 1062
AclWI	GGATC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	3 cut(s)	353, 423, 461
AcyI	GRCGYC	1 cut(s)	638
AfaI	GTAC	3 cut(s)	82, 773, 793
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	158, 296, 758, 1051
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	7 cut(s)	141, 169, 194, 274, 373, 551, 979
AluI	AGCT	7 cut(s)	141, 169, 194, 274, 373, 551, 979
Alw26I	GTCTC	2 cut(s)	595, 629
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	2 cut(s)	498, 1063
ApeKI	GCWGC	2 cut(s)	4, 899
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	1064
AsuHPI	GGTGA	2 cut(s)	955, 1036
BalI	TGGCCA	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	5 cut(s)	252, 329, 499, 874, 965
BciVI	GTATCC	1 cut(s)	980
BcoDI	GTCTC	2 cut(s)	595, 629
BfaI	CTAG	1 cut(s)	548
BfrI	CTTAAG	1 cut(s)	248
BfuI	GTATCC	1 cut(s)	980
BisI	GCNGC	3 cut(s)	5, 900, 1063
BlsI	GCNGC	3 cut(s)	6, 901, 1064
BmcAI	AGTACT	1 cut(s)	793
BmgT120I	GGNCC	1 cut(s)	1064
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	3 cut(s)	84, 334, 925
BmuI	ACTGGG	1 cut(s)	20
BpmI	CTGGAG	2 cut(s)	339, 537
BpuEI	CTTGAG	3 cut(s)	296, 671, 996
BsaHI	GRCGYC	1 cut(s)	638
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 535, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	3 cut(s)	15, 322, 879
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	5 cut(s)	34, 75, 340, 678, 940
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	3 cut(s)	548, 741, 1016
BseNI	ACTGG	3 cut(s)	15, 322, 879
BseRI	GAGGAG	1 cut(s)	583
BseXI	GCAGC	1 cut(s)	886
BshFI	GGCC	2 cut(s)	500, 1065
BslFI	GGGAC	1 cut(s)	1049
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	2 cut(s)	595, 629
BsmBI	CGTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	1049
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	500, 1065
Bso31I	GGTCTC	1 cut(s)	595
Bsp143I	GATC	4 cut(s)	301, 388, 511, 1041
BspACI	CCGC	2 cut(s)	361, 1062
BspANI	GGCC	2 cut(s)	500, 1065
BspCNI	CTCAG	3 cut(s)	547, 742, 1017
BspHI	TCATGA	1 cut(s)	55
BspPI	GGATC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	595
BsrI	ACTGG	3 cut(s)	15, 322, 879
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	4 cut(s)	301, 388, 511, 1041
BssNI	GRCGYC	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	4 cut(s)	418, 451, 661, 796
BstACI	GRCGYC	1 cut(s)	638
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	4 cut(s)	534, 750, 980, 1025
BstF5I	GGATG	5 cut(s)	34, 75, 340, 678, 940
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	4 cut(s)	304, 391, 514, 1044
BstMAI	GTCTC	2 cut(s)	595, 629
BstMBI	GATC	4 cut(s)	301, 388, 511, 1041
BstV1I	GCAGC	1 cut(s)	886
BsuI	GTATCC	1 cut(s)	980
BsuRI	GGCC	2 cut(s)	500, 1065
BtsCI	GGATG	5 cut(s)	34, 75, 340, 678, 940
BtsIMutI	CAGTG	2 cut(s)	872, 1022
Cac8I	GCNNGC	1 cut(s)	272
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	1064
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	3 cut(s)	81, 772, 792
CviAII	CATG	3 cut(s)	56, 717, 847
CviQI	GTAC	3 cut(s)	81, 772, 792
DdeI	CTNAG	4 cut(s)	534, 750, 980, 1025
DpnI	GATC	4 cut(s)	303, 390, 513, 1043
DpnII	GATC	4 cut(s)	301, 388, 511, 1041
EaeI	YGGCCR	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	595
Eco32I	GATATC	1 cut(s)	207
Eco57I	CTGAAG	3 cut(s)	353, 423, 461
EcoRV	GATATC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	3 cut(s)	59, 720, 850
FalI	AAGNNNNNCTT	2 cut(s)	1031, 1063
FaqI	GGGAC	1 cut(s)	1049
FatI	CATG	3 cut(s)	55, 716, 846
Fnu4HI	GCNGC	3 cut(s)	5, 900, 1063
FokI	GGATG	5 cut(s)	21, 62, 347, 665, 947
Fsp4HI	GCNGC	3 cut(s)	5, 900, 1063
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	3 cut(s)	5, 900, 1063
GsuI	CTGGAG	2 cut(s)	339, 537
HaeIII	GGCC	2 cut(s)	500, 1065
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	638
Hin1II	CATG	3 cut(s)	59, 720, 850
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	7 cut(s)	50, 381, 557, 859, 891, 1009, 1027
HphI	GGTGA	2 cut(s)	955, 1036
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	5 cut(s)	480, 537, 738, 822, 995
Hpy188III	TCNNGA	5 cut(s)	56, 173, 296, 440, 554
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	5 cut(s)	38, 720, 805, 872, 1051
HpyCH4III	ACNGT	4 cut(s)	418, 451, 661, 796
HpyCH4IV	ACGT	3 cut(s)	310, 638, 774
HpyCH4V	TGCA	7 cut(s)	7, 75, 90, 215, 347, 914, 1022
HpyF3I	CTNAG	4 cut(s)	534, 750, 980, 1025
HpySE526I	ACGT	3 cut(s)	310, 638, 774
Hsp92I	GRCGYC	1 cut(s)	638
Hsp92II	CATG	3 cut(s)	59, 720, 850
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	4 cut(s)	301, 388, 511, 1041
LmnI	GCTCC	1 cut(s)	556
LpnPI	CCDG	9 cut(s)	234, 284, 303, 363, 405, 567, 591, 860, 869
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	3 cut(s)	84, 334, 925
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	3 cut(s)	310, 638, 774
MaeIII	GTNAC	3 cut(s)	412, 445, 620
MalI	GATC	4 cut(s)	303, 390, 513, 1043
MboI	GATC	4 cut(s)	301, 388, 511, 1041
MboII	GAAGA	7 cut(s)	113, 121, 124, 170, 296, 359, 705
MfeI	CAATTG	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	4 cut(s)	39, 63, 481, 996
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	4 cut(s)	853, 900, 1003, 1036
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	175, 283, 543, 604, 905, 925
Mox20I	TGGCCA	1 cut(s)	500
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	8 cut(s)	122, 147, 249, 420, 516, 585, 672, 834
Msp20I	TGGCCA	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	363
NdeII	GATC	4 cut(s)	301, 388, 511, 1041
NlaIII	CATG	3 cut(s)	59, 720, 850
PagI	TCATGA	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PctI	GAATGC	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	50, 381, 557
PkrI	GCNGC	3 cut(s)	6, 901, 1064
PleI	GAGTC	4 cut(s)	853, 899, 1003, 1035
PpsI	GAGTC	4 cut(s)	853, 899, 1003, 1035
PspPI	GGNCC	1 cut(s)	1064
RsaI	GTAC	3 cut(s)	82, 773, 793
RsaNI	GTAC	3 cut(s)	81, 772, 792
SaqAI	TTAA	8 cut(s)	122, 147, 249, 420, 516, 585, 672, 834
SatI	GCNGC	3 cut(s)	5, 900, 1063
Sau3AI	GATC	4 cut(s)	301, 388, 511, 1041
Sau96I	GGNCC	1 cut(s)	1064
ScaI	AGTACT	1 cut(s)	793
SchI	GAGTC	4 cut(s)	853, 900, 1003, 1036
SfaNI	GCATC	3 cut(s)	84, 334, 925
SmlI	CTYRAG	4 cut(s)	248, 275, 650, 1011
SmoI	CTYRAG	4 cut(s)	248, 275, 650, 1011
Sse9I	AATT	4 cut(s)	39, 63, 481, 996
SsiI	CCGC	2 cut(s)	361, 1062
SspMI	CTAG	1 cut(s)	548
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	418, 451, 661, 796
TaiI	ACGT	3 cut(s)	313, 641, 777
TaqI	TCGA	1 cut(s)	441
TasI	AATT	4 cut(s)	39, 63, 481, 996
TatI	WGTACW	1 cut(s)	791
TauI	GCSGC	1 cut(s)	1065
TfiI	GAWTC	3 cut(s)	50, 381, 557
Tru1I	TTAA	8 cut(s)	122, 147, 249, 420, 516, 585, 672, 834
Tru9I	TTAA	8 cut(s)	122, 147, 249, 420, 516, 585, 672, 834
TscAI	CASTG	2 cut(s)	879, 1029
TseI	GCWGC	2 cut(s)	4, 899
TspDTI	ATGAA	3 cut(s)	114, 705, 863
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	879, 1029
Vha464I	CTTAAG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	481
XspI	CTAG	1 cut(s)	548
ZraI	GACGTC	1 cut(s)	639
ZrmI	AGTACT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.