Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019305

Physical Location & Seq

Genomic Coordinates Forward (+)

71828289 .. 71830151

Gene Structure 1863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG498100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATTACATCTCTCCTTCTTCATGTGCTGATGTGTTGTTTCGGACAATGTGGGCTGAGTTTGAATGGGAAAATAAGGTTGCTATAAGTACTGTTACCAAAGACGAGAAGGACTTTCTGAACCACATCGTTAAAGCAACTAACATGAAGTGCCTGACTCCACCATCGGCACTGGAAGGAGAGTGTGGAGTCCTCGCTGGCAATCTGTATGCAAAGAGTGTTTTCGGGGAGGATGCTTTGGTGAATGTGAGTGTTGAGAAACAAGCAGATGGTAAGCTAAGTGGATACATCAGAATTAGAAGCAAGACTCAAGGTATTGCACTGAGTCTTGGGGACAAGATCACCTTGAAACAGAAGGGCGGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

122

Amino Acids

13.29

Weight (kDa)

6.57

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_b_Cpla	PF14806	1 - 114	1.4e-49	Coatomer beta subunit appendage platform

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019305)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G018100_v2.0.a1
rosa_multiflora	Rmu_co8391663.1_g000001 Rmu_sc0001169.1_g000013 Rmu_sc0034979.1_g000001
rosa_samantha	Rh2BG489000 Rh2BG489100 Rh2DG498000 Rh2DG498100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	65, 349
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
AoxI	GGCC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	253, 334
BccI	CCATC	2 cut(s)	172, 263
BciVI	GTATCC	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
BmcAI	AGTACT	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	362
BmsI	GCATC	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	48, 314
BseNI	ACTGG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	2 cut(s)	49, 315
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	3 cut(s)	57, 278, 323
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	170, 320
Cac8I	GCNNGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	2 cut(s)	24, 145
CviJI	RGCY	3 cut(s)	56, 277, 363
CviKI_1	RGCY	3 cut(s)	56, 277, 363
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	3 cut(s)	57, 278, 323
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
FaeI	CATG	2 cut(s)	27, 148
FaiI	YATR	4 cut(s)	25, 86, 146, 210
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	23, 144
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	27, 148
HinfI	GANTC	4 cut(s)	157, 189, 307, 325
HphI	GGTGA	2 cut(s)	253, 334
Hpy188I	TCNGA	3 cut(s)	45, 120, 293
HpyAV	CCTTC	4 cut(s)	27, 103, 170, 349
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	212, 320
HpyF3I	CTNAG	3 cut(s)	57, 278, 323
Hsp92II	CATG	2 cut(s)	27, 148
Kzo9I	GATC	1 cut(s)	339
LpnPI	CCDG	3 cut(s)	158, 167, 183
LweI	GCATC	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	1 cut(s)	12
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	4 cut(s)	151, 198, 301, 334
MnlI	CCTC	2 cut(s)	203, 223
MseI	TTAA	1 cut(s)	132
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	2 cut(s)	27, 148
PkrI	GCNGC	1 cut(s)	362
PleI	GAGTC	4 cut(s)	151, 197, 301, 333
PpsI	GAGTC	4 cut(s)	151, 197, 301, 333
PspPI	GGNCC	1 cut(s)	362
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	362
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	4 cut(s)	151, 198, 301, 334
SetI	ASST	4 cut(s)	81, 279, 316, 347
SfaNI	GCATC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	1 cut(s)	294
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	177, 327
TspDTI	ATGAA	2 cut(s)	12, 161
TspRI	CASTG	2 cut(s)	177, 327
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.