Rmu_sc0001195.1_g000023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001195.1
OG0020067
Physical Location & Seq
Forward (+)
107910 .. 111208
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 735 bp
atgaagcctataaggaatttacaaataccggtagagcttcttgctattcaaaccggattggcatttgtgcaacagcaatgtactcactcagtcctcgttgagacggattgccaaagagctgtacatgacatcaatggatcagctgctatcctgtctaaacatggaattttagttgaagacatccggaacaccttaagacgtatgccacaagtcaaggtgtcttttgctcccagaacatgcaacgaggttgcacatagttgcaggtcgggtcgatgcccagaaacctgcaaccctgacctcctccgatctcaatcgctgcccaaacgcgtctgggaagcctctggcctccgtccggcaagctccatgttgtcgttgctgcctggaacagcctgttgcgtcgccgtccgcaccttagcgaaacccatcacacagcctacagaccccgcctcagccttgcacaagcgctgcacacacgccgcaacacacgggactacagcacttgcaagcctcaatcttccagtagcccaactccgcgcatcagcccgcaacagccacttcggcaacccacccgcctacgctccagcgccctccccgcctgcgcagatcccagctgccacagctcgccttaacaactcgcgtgcggcctctcaccaaacaggccttagccctgccgccaacccggtctcctccacacccgtccggccaacatccagatccgcgatgccaacatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

244

Amino Acids

25.87

Weight (kDa)

10.19

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 11 - 87 4.4e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020067)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001195.1_g000023
rosa_samantha Rh2CG506000 Rh4AG405400 Rh4BG416400 Rh4CG430900 Rh4DG412000 Rh7DG432300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 600
Acc36I ACCTGC 2 cut(s) 252, 293
AccII CGCG 4 cut(s) 327, 534, 637, 719
AccIII TCCGGA 1 cut(s) 183
AclWI GGATC 3 cut(s) 145, 598, 708
AcoI YGGCCR 1 cut(s) 701
AcsI RAATTY 2 cut(s) 16, 165
AfaI GTAC 2 cut(s) 82, 123
AfeI AGCGCT 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 352
AflII CTTAAG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 325
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 50, 176
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 6 cut(s) 37, 119, 143, 360, 611, 620
AluI AGCT 6 cut(s) 37, 119, 143, 360, 611, 620
Alw26I GTCTC 2 cut(s) 95, 688
AlwI GGATC 3 cut(s) 145, 598, 708
Aor13HI TCCGGA 1 cut(s) 183
Aor51HI AGCGCT 1 cut(s) 464
AoxI GGCC 4 cut(s) 343, 642, 658, 701
ApeKI GCWGC 5 cut(s) 143, 316, 376, 465, 611
ApoI RAATTY 2 cut(s) 16, 165
AsiGI ACCGGT 1 cut(s) 28
AspLEI GCGC 4 cut(s) 465, 536, 586, 601
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 448
BbvI GCAGC 5 cut(s) 130, 303, 363, 452, 598
BccI CCATC 1 cut(s) 431
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 1 cut(s) 381
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 2 cut(s) 95, 688
BfaI CTAG 1 cut(s) 733
BfmI CTRYAG 2 cut(s) 435, 492
BfoI RGCGCY 2 cut(s) 466, 587
BfrI CTTAAG 1 cut(s) 193
BfuAI ACCTGC 2 cut(s) 252, 293
BglI GCCNNNNNGGC 1 cut(s) 558
BisI GCNGC 8 cut(s) 144, 317, 377, 466, 477, 612, 642, 672
BlsI GCNGC 8 cut(s) 145, 318, 378, 467, 478, 613, 643, 673
Bme1390I CCNGG 2 cut(s) 381, 680
BmrFI CCNGG 2 cut(s) 381, 680
BmsI GCATC 3 cut(s) 263, 545, 711
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 3 cut(s) 412, 448, 662
BpuMI CCSGG 1 cut(s) 680
BsaBI GATNNNNATC 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 688
BsaWI WCCGGW 3 cut(s) 28, 53, 183
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 310
BseAI TCCGGA 1 cut(s) 183
BseBI CCWGG 1 cut(s) 381
BseGI GGATG 3 cut(s) 180, 707, 728
BseJI GATNNNNATC 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 102, 462
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 2 cut(s) 290, 676
BseXI GCAGC 5 cut(s) 130, 303, 363, 452, 598
BseYI CCCAGC 1 cut(s) 607
BsgI GTGCAG 1 cut(s) 451
Bsh1236I CGCG 4 cut(s) 327, 534, 637, 719
BshFI GGCC 4 cut(s) 345, 644, 660, 703
BshTI ACCGGT 1 cut(s) 28
BsiSI CCGG 6 cut(s) 29, 54, 184, 353, 680, 700
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 2 cut(s) 95, 688
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 4 cut(s) 345, 644, 660, 703
Bso31I GGTCTC 1 cut(s) 688
Bsp13I TCCGGA 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 4 cut(s) 137, 305, 603, 713
BspANI GGCC 4 cut(s) 345, 644, 660, 703
BspCNI CTCAG 2 cut(s) 101, 461
BspEI TCCGGA 1 cut(s) 183
BspFNI CGCG 4 cut(s) 327, 534, 637, 719
BspMI ACCTGC 2 cut(s) 252, 293
BspPI GGATC 3 cut(s) 145, 598, 708
BspTI CTTAAG 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 688
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 1 cut(s) 518
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 4 cut(s) 137, 305, 603, 713
Bst2UI CCWGG 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 193
BstAUI TGTACA 1 cut(s) 121
BstC8I GCNNGC 6 cut(s) 358, 505, 544, 597, 622, 639
BstDEI CTNAG 4 cut(s) 88, 412, 448, 662
BstF5I GGATG 3 cut(s) 180, 707, 728
BstFNI CGCG 4 cut(s) 327, 534, 637, 719
BstH2I RGCGCY 2 cut(s) 466, 587
BstHHI GCGC 4 cut(s) 465, 536, 586, 601
BstKTI GATC 4 cut(s) 140, 308, 606, 716
BstMAI GTCTC 2 cut(s) 95, 688
BstMBI GATC 4 cut(s) 137, 305, 603, 713
BstMWI GCNNNNNNNGC 3 cut(s) 558, 592, 617
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 379, 678
BstSFI CTRYAG 2 cut(s) 435, 492
BstUI CGCG 4 cut(s) 327, 534, 637, 719
BstV1I GCAGC 5 cut(s) 130, 303, 363, 452, 598
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 603, 713
BstYI RGATCY 2 cut(s) 603, 713
BsuRI GGCC 4 cut(s) 345, 644, 660, 703
BtsCI GGATG 3 cut(s) 180, 707, 728
BveI ACCTGC 2 cut(s) 252, 293
Cac8I GCNNGC 6 cut(s) 358, 505, 544, 597, 622, 639
CfoI GCGC 4 cut(s) 465, 536, 586, 601
Cfr10I RCCGGY 1 cut(s) 28
CseI GACGC 2 cut(s) 316, 385
Csp6I GTAC 2 cut(s) 81, 122
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 4 cut(s) 125, 161, 237, 364
CviQI GTAC 2 cut(s) 81, 122
DdeI CTNAG 4 cut(s) 88, 412, 448, 662
DpnI GATC 4 cut(s) 139, 307, 605, 715
DpnII GATC 4 cut(s) 137, 305, 603, 713
EaeI YGGCCR 1 cut(s) 701
Eco147I AGGCCT 1 cut(s) 660
Eco31I GGTCTC 1 cut(s) 688
Eco47III AGCGCT 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 379
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 4 cut(s) 128, 164, 240, 367
FaiI YATR 7 cut(s) 11, 126, 162, 203, 238, 255, 365
FaqI GGGAC 1 cut(s) 502
FatI CATG 4 cut(s) 124, 160, 236, 363
FauI CCCGC 4 cut(s) 451, 551, 577, 600
Fnu4HI GCNGC 8 cut(s) 144, 317, 377, 466, 477, 612, 642, 672
FokI GGATG 3 cut(s) 167, 694, 715
Fsp4HI GCNGC 8 cut(s) 144, 317, 377, 466, 477, 612, 642, 672
FspBI CTAG 1 cut(s) 733
FspI TGCGCA 1 cut(s) 600
GlaI GCGC 4 cut(s) 464, 535, 585, 600
GluI GCNGC 8 cut(s) 144, 317, 377, 466, 477, 612, 642, 672
GsaI CCCAGC 1 cut(s) 611
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 2 cut(s) 466, 587
HaeIII GGCC 4 cut(s) 345, 644, 660, 703
HapII CCGG 6 cut(s) 29, 54, 184, 353, 680, 700
HgaI GACGC 2 cut(s) 316, 385
HhaI GCGC 4 cut(s) 465, 536, 586, 601
Hin1II CATG 4 cut(s) 128, 164, 240, 367
Hin6I GCGC 4 cut(s) 463, 534, 584, 599
HinP1I GCGC 4 cut(s) 463, 534, 584, 599
HpaII CCGG 6 cut(s) 29, 54, 184, 353, 680, 700
HphI GGTGA 1 cut(s) 641
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 2 cut(s) 184, 711
Hpy99I CGWCG 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 8 cut(s) 70, 240, 251, 261, 288, 457, 468, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 558, 592, 617
HpyF3I CTNAG 4 cut(s) 88, 412, 448, 662
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 4 cut(s) 128, 164, 240, 367
HspAI GCGC 4 cut(s) 463, 534, 584, 599
Kpn2I TCCGGA 1 cut(s) 183
Kzo9I GATC 4 cut(s) 137, 305, 603, 713
LmnI GCTCC 3 cut(s) 232, 365, 583
Lsp1109I GCAGC 5 cut(s) 130, 303, 363, 452, 598
LweI GCATC 3 cut(s) 263, 545, 711
MaeI CTAG 1 cut(s) 733
MaeII ACGT 1 cut(s) 199
MalI GATC 4 cut(s) 139, 307, 605, 715
MboI GATC 4 cut(s) 137, 305, 603, 713
MboII GAAGA 2 cut(s) 188, 506
MflI RGATCY 2 cut(s) 603, 713
MluCI AATT 2 cut(s) 16, 165
MluI ACGCGT 1 cut(s) 325
MroI TCCGGA 1 cut(s) 183
MseI TTAA 2 cut(s) 194, 627
MspA1I CMGCKG 2 cut(s) 143, 611
MspCI CTTAAG 1 cut(s) 193
MspI CCGG 6 cut(s) 29, 54, 184, 353, 680, 700
MspR9I CCNGG 2 cut(s) 381, 680
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 4 cut(s) 327, 534, 637, 719
MwoI GCNNNNNNNGC 3 cut(s) 558, 592, 617
NciI CCSGG 1 cut(s) 680
NdeII GATC 4 cut(s) 137, 305, 603, 713
NlaIII CATG 4 cut(s) 128, 164, 240, 367
NsbI TGCGCA 1 cut(s) 600
NspI RCATGY 1 cut(s) 240
PceI AGGCCT 1 cut(s) 660
PinAI ACCGGT 1 cut(s) 28
PkrI GCNGC 8 cut(s) 145, 318, 378, 467, 478, 613, 643, 673
Psp6I CCWGG 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 607
PspGI CCWGG 1 cut(s) 379
PsuI RGATCY 2 cut(s) 603, 713
PvuII CAGCTG 2 cut(s) 143, 611
RsaI GTAC 2 cut(s) 82, 123
RsaNI GTAC 2 cut(s) 81, 122
SaqAI TTAA 2 cut(s) 194, 627
SatI GCNGC 8 cut(s) 144, 317, 377, 466, 477, 612, 642, 672
Sau3AI GATC 4 cut(s) 137, 305, 603, 713
ScrFI CCNGG 2 cut(s) 381, 680
SfaNI GCATC 3 cut(s) 263, 545, 711
SfcI CTRYAG 2 cut(s) 435, 492
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 2 cut(s) 16, 165
SseBI AGGCCT 1 cut(s) 660
SspMI CTAG 1 cut(s) 733
StuI AGGCCT 1 cut(s) 660
StyD4I CCNGG 2 cut(s) 379, 678
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 271
TasI AATT 2 cut(s) 16, 165
TatI WGTACW 2 cut(s) 80, 121
TauI GCSGC 3 cut(s) 479, 644, 674
Tru1I TTAA 2 cut(s) 194, 627
Tru9I TTAA 2 cut(s) 194, 627
TseI GCWGC 5 cut(s) 143, 316, 376, 465, 611
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 119, 338
Vha464I CTTAAG 1 cut(s) 193
XapI RAATTY 2 cut(s) 16, 165
XceI RCATGY 1 cut(s) 240
XspI CTAG 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.