Rh4AG405400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0020067
Physical Location & Seq
Forward (+)
70700411 .. 70713097
12687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG405400.1

Sequence Viewer

Length: 234 bp
ATGGCAAGGGCCACAGTCAATTGGCTTCGCCTAGAGGCAGATGGTGAATCAATCAAGGCAGCACAGAGTTTGCGGCTTGCCGCTGGGCTTGAAGTGGATCGTTATTGTTACAGGTCAGATGTGGATGGGTGGCTCAAAGCCGGCTGTGCTCTCGCCGCCGCCGCCGCAATAGCTCAGCTCCGCACCGGTGGTGGTTTCAGCCGGACAGTTCTGGTGGCTCGCGAAACTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.18

Weight (kDa)

8.8

Isoelectric Point (pI)

28.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020067)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001195.1_g000023
rosa_samantha Rh2CG506000 Rh4AG405400 Rh4BG416400 Rh4CG430900 Rh4DG412000 Rh7DG432300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 222
AciI CCGC 7 cut(s) 73, 81, 156, 159, 162, 165, 181
AclWI GGATC 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 185
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 2 cut(s) 173, 178
AluI AGCT 2 cut(s) 173, 178
Alw21I GWGCWC 1 cut(s) 151
AlwI GGATC 1 cut(s) 105
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 59
AsiGI ACCGGT 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 71
BccI CCATC 2 cut(s) 35, 119
BfaI CTAG 1 cut(s) 32
BisI GCNGC 7 cut(s) 60, 74, 81, 156, 159, 162, 165
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 7 cut(s) 61, 75, 82, 157, 160, 163, 166
BmgT120I GGNCC 1 cut(s) 9
Bpu1102I GCTNAGC 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 185
Bse118I RCCGGY 2 cut(s) 140, 185
BseGI GGATG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 11
BshTI ACCGGT 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 3 cut(s) 141, 186, 202
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 97
Bsp1720I GCTNAGC 1 cut(s) 174
Bsp68I TCGCGA 1 cut(s) 222
BspACI CCGC 7 cut(s) 73, 81, 156, 159, 162, 165, 181
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 1 cut(s) 222
BspPI GGATC 1 cut(s) 105
BsrFI RCCGGY 2 cut(s) 140, 185
BssAI RCCGGY 2 cut(s) 140, 185
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 16, 208
BstC8I GCNNGC 3 cut(s) 78, 142, 220
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 5 cut(s) 146, 155, 161, 164, 170
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 130
BtuMI TCGCGA 1 cut(s) 222
Cac8I GCNNGC 3 cut(s) 78, 142, 220
Cfr10I RCCGGY 2 cut(s) 140, 185
Cfr13I GGNCC 1 cut(s) 9
CspAI ACCGGT 1 cut(s) 185
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Fnu4HI GCNGC 7 cut(s) 60, 74, 81, 156, 159, 162, 165
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 7 cut(s) 60, 74, 81, 156, 159, 162, 165
FspBI CTAG 1 cut(s) 32
GluI GCNGC 7 cut(s) 60, 74, 81, 156, 159, 162, 165
GsaI CCCAGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 11
HapII CCGG 3 cut(s) 141, 186, 202
HinfI GANTC 1 cut(s) 47
HpaII CCGG 3 cut(s) 141, 186, 202
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 16, 208
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 155, 161, 164, 170
HpyF3I CTNAG 1 cut(s) 174
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 69, 97, 154, 197, 199, 215
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MfeI CAATTG 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 1 cut(s) 19
MnlI CCTC 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 3 cut(s) 141, 186, 202
MunI CAATTG 1 cut(s) 19
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 5 cut(s) 146, 155, 161, 164, 170
NaeI GCCGGC 1 cut(s) 142
NdeII GATC 1 cut(s) 97
NgoMIV GCCGGC 1 cut(s) 140
NruI TCGCGA 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 47
PinAI ACCGGT 1 cut(s) 185
PkrI GCNGC 7 cut(s) 61, 75, 82, 157, 160, 163, 166
PspFI CCCAGC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 9
RruI TCGCGA 1 cut(s) 222
SatI GCNGC 7 cut(s) 60, 74, 81, 156, 159, 162, 165
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 151
SetI ASST 3 cut(s) 116, 175, 180
SgrAI CRCCGGYG 1 cut(s) 185
Sse9I AATT 1 cut(s) 19
SsiI CCGC 7 cut(s) 73, 81, 156, 159, 162, 165, 181
SspMI CTAG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 16, 208
TasI AATT 1 cut(s) 19
TauI GCSGC 6 cut(s) 76, 83, 158, 161, 164, 167
TfiI GAWTC 1 cut(s) 47
TseI GCWGC 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 219
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.