Rh7DG432300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0020067
Physical Location & Seq
Forward (+)
61446156 .. 61446458
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG432300.1

Sequence Viewer

Length: 303 bp
ATGGCATCAATGATGCATGTGAGAATGATAGATGGTCTAATTCATTCAGACTCAAAGCTGGGAGAGAGCGTGAATGGCCATGGCGGATGCGGCCGTGCCGAGCTCTACTCAAATCTAGGTCGAACGTGGGCGGTAATTCATGGAGTAGTCGCCTGTGTCAAGACCTGGTATTGCGACAGCGAACTGGGAGAAGCGGCTACCAGCCTTGGTGGGCTTCGCTTGGAGGCAGATAGTGAATCAATCATGGAAGAATCAAGATGTTGGCTTGGTGCTGGGCTTGAAGTGGATCACTGGTTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.86

Weight (kDa)

5.01

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020067)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001195.1_g000023
rosa_samantha Rh2CG506000 Rh4AG405400 Rh4BG416400 Rh4CG430900 Rh4DG412000 Rh7DG432300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 84, 90, 131, 194
AclWI GGATC 1 cut(s) 294
AcoI YGGCCR 2 cut(s) 76, 91
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 2 cut(s) 58, 103
AluI AGCT 2 cut(s) 58, 103
Alw21I GWGCWC 1 cut(s) 105
AlwI GGATC 1 cut(s) 294
AoxI GGCC 2 cut(s) 76, 91
BalI TGGCCA 1 cut(s) 78
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 166
BfaI CTAG 2 cut(s) 116, 301
BisI GCNGC 2 cut(s) 91, 195
BlsI GCNGC 2 cut(s) 92, 196
Bme1390I CCNGG 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 3 cut(s) 3, 14, 77
BmuI ACTGGG 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BsaJI CCNNGG 2 cut(s) 79, 205
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bse1I ACTGG 2 cut(s) 189, 296
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 79, 205
BseGI GGATG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 189, 296
BseX3I CGGCCG 1 cut(s) 91
BseYI CCCAGC 2 cut(s) 58, 272
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 78, 93
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 105
BsnI GGCC 2 cut(s) 78, 93
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 286
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 4 cut(s) 84, 90, 131, 194
BspANI GGCC 2 cut(s) 78, 93
BspPI GGATC 1 cut(s) 294
BsrI ACTGG 2 cut(s) 189, 296
BssECI CCNNGG 2 cut(s) 79, 205
BssMI GATC 1 cut(s) 286
BssT1I CCWWGG 2 cut(s) 79, 205
Bst2UI CCWGG 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 75, 90
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 164
BstZI CGGCCG 1 cut(s) 91
BsuRI GGCC 2 cut(s) 78, 93
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 164
CviAII CATG 4 cut(s) 17, 80, 140, 244
CviJI RGCY 9 cut(s) 58, 78, 93, 103, 197, 204, 214, 265, 277
CviKI_1 RGCY 9 cut(s) 58, 78, 93, 103, 197, 204, 214, 265, 277
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
EaeI YGGCCR 2 cut(s) 76, 91
EagI CGGCCG 1 cut(s) 91
EciI GGCGGA 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 79, 205
Eco24I GRGCYC 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 79, 205
EcoT22I ATGCAT 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 79, 205
FaeI CATG 4 cut(s) 20, 83, 143, 247
FaiI YATR 4 cut(s) 18, 81, 141, 245
FatI CATG 4 cut(s) 16, 79, 139, 243
Fnu4HI GCNGC 2 cut(s) 91, 195
FokI GGATG 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 91, 195
FspBI CTAG 2 cut(s) 116, 301
GluI GCNGC 2 cut(s) 91, 195
GsaI CCCAGC 2 cut(s) 62, 276
HaeIII GGCC 2 cut(s) 78, 93
Hin1II CATG 4 cut(s) 20, 83, 143, 247
HinfI GANTC 3 cut(s) 50, 236, 251
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 160, 255
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 90
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 4 cut(s) 20, 83, 143, 247
Kzo9I GATC 1 cut(s) 286
LpnPI CCDG 8 cut(s) 44, 151, 166, 170, 178, 214, 258, 277
LweI GCATC 3 cut(s) 3, 14, 77
MabI ACCWGGT 1 cut(s) 164
MaeI CTAG 2 cut(s) 116, 301
MaeII ACGT 1 cut(s) 125
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 105
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 2 cut(s) 39, 135
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 1 cut(s) 217
Mox20I TGGCCA 1 cut(s) 78
Mph1103I ATGCAT 1 cut(s) 18
MscI TGGCCA 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 75, 90
NcoI CCATGG 1 cut(s) 79
NdeII GATC 1 cut(s) 286
NlaIII CATG 4 cut(s) 20, 83, 143, 247
NmeAIII GCCGAG 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 18
NspI RCATGY 1 cut(s) 20
PfeI GAWTC 2 cut(s) 236, 251
PkrI GCNGC 2 cut(s) 92, 196
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 2 cut(s) 58, 272
PspGI CCWGG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 2 cut(s) 91, 195
Sau3AI GATC 1 cut(s) 286
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 105
SetI ASST 5 cut(s) 60, 105, 121, 128, 167
SexAI ACCWGGT 1 cut(s) 164
SfaNI GCATC 3 cut(s) 3, 14, 77
Sse9I AATT 2 cut(s) 39, 135
SsiI CCGC 4 cut(s) 84, 90, 131, 194
SspMI CTAG 2 cut(s) 116, 301
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 2 cut(s) 79, 205
TaiI ACGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 121
TasI AATT 2 cut(s) 39, 135
TauI GCSGC 2 cut(s) 93, 197
TfiI GAWTC 2 cut(s) 236, 251
TscAI CASTG 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 32, 128
TspRI CASTG 1 cut(s) 296
XceI RCATGY 1 cut(s) 20
XspI CTAG 2 cut(s) 116, 301
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.