Rh2CG506000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0020067
Physical Location & Seq
Forward (+)
67785831 .. 67791306
5476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG506000.1

Sequence Viewer

Length: 261 bp
ATGGCGAGACCTGGAATTGGCCGCGGTGAACAGCGTGGATTGTCTGCCAGCCTCGGCGGGCTTCGCCTGGAAGAAAATGGGGAATCATTCATGGAAGAATCAGAATTTCGGCTTGGTGCTGGGCTTGAAGTGGACCGCTCGTGTTGCAAGCCAGCAGGGGCTCGACGGCTCGGTGCCGGCTGTGGATTAGCGCTAATGAATTCTAAATTTAAATCTAATTGTAATTGCTGCAAATCCAACTATATGTATAAAATTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.3

Weight (kDa)

9.07

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020067)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001195.1_g000023
rosa_samantha Rh2CG506000 Rh4AG405400 Rh4BG416400 Rh4CG430900 Rh4DG412000 Rh7DG432300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 138
AccII CGCG 1 cut(s) 24
AciI CCGC 4 cut(s) 22, 24, 57, 136
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 4 cut(s) 104, 199, 206, 252
AfeI AGCGCT 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 2 cut(s) 10, 66
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
Aor51HI AGCGCT 1 cut(s) 192
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 4 cut(s) 104, 199, 206, 252
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 163
BauI CACGAG 1 cut(s) 139
BbvI GCAGC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 2 cut(s) 12, 68
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 2 cut(s) 22, 229
BlsI GCNGC 2 cut(s) 23, 230
Bme1390I CCNGG 2 cut(s) 12, 68
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 12, 68
BsaJI CCNNGG 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 176
BseBI CCWGG 2 cut(s) 12, 68
BseDI CCNNGG 2 cut(s) 22, 52
BseLI CCNNNNNNNGG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 17
BsnI GGCC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 163
BspACI CCGC 4 cut(s) 22, 24, 57, 136
BspANI GGCC 1 cut(s) 21
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 22, 52
BssSI CACGAG 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 12, 68
BstC8I GCNNGC 5 cut(s) 49, 59, 149, 153, 178
BstDSI CCRYGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 63, 144
BstNI CCWGG 2 cut(s) 12, 68
BstSCI CCNGG 2 cut(s) 10, 66
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 22
Cac8I GCNNGC 5 cut(s) 49, 59, 149, 153, 178
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 133
Cfr42I CCGCGG 1 cut(s) 25
CviAII CATG 1 cut(s) 91
CviJI RGCY 9 cut(s) 21, 51, 61, 112, 124, 151, 161, 169, 180
CviKI_1 RGCY 9 cut(s) 21, 51, 61, 112, 124, 151, 161, 169, 180
DraI TTTAAA 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 133
Eco47III AGCGCT 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 10, 66
EcoT38I GRGCYC 1 cut(s) 163
FaeI CATG 1 cut(s) 94
FaiI YATR 4 cut(s) 92, 243, 245, 249
FatI CATG 1 cut(s) 90
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 22, 229
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 2 cut(s) 22, 229
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 22, 229
GsaI CCCAGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 21
HapII CCGG 1 cut(s) 177
HhaI GCGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 2 cut(s) 83, 98
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 29, 133
Hpy188I TCNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 29, 133
Hpy99I CGWCG 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 147, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 144
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 191
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
KspI CCGCGG 1 cut(s) 25
LpnPI CCDG 8 cut(s) 24, 53, 61, 80, 105, 141, 165, 190
Lsp1109I GCAGC 1 cut(s) 215
MbiI CCGCTC 1 cut(s) 138
MboII GAAGA 2 cut(s) 83, 107
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 7 cut(s) 15, 104, 199, 206, 217, 223, 252
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 176
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 12, 68
MvaI CCWGG 2 cut(s) 12, 68
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 63, 144
NaeI GCCGGC 1 cut(s) 178
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 83, 98
PkrI GCNGC 2 cut(s) 23, 230
Psp6I CCWGG 2 cut(s) 10, 66
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 10, 66
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 133
SacII CCGCGG 1 cut(s) 25
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 22, 229
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 12, 68
SduI GDGCHC 1 cut(s) 163
SetI ASST 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 25
SgrBI CCGCGG 1 cut(s) 25
SinI GGWCC 1 cut(s) 133
SmiI ATTTAAAT 1 cut(s) 211
Sse9I AATT 7 cut(s) 15, 104, 199, 206, 217, 223, 252
SsiI CCGC 4 cut(s) 22, 24, 57, 136
StyD4I CCNGG 2 cut(s) 10, 66
SwaI ATTTAAAT 1 cut(s) 211
TaqI TCGA 2 cut(s) 163, 256
TasI AATT 7 cut(s) 15, 104, 199, 206, 217, 223, 252
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 2 cut(s) 83, 98
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 2 cut(s) 79, 212
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 4 cut(s) 104, 199, 206, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.