Rh4CG430900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0020067
Physical Location & Seq
Forward (+)
67136511 .. 67141174
4664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG430900.1

Sequence Viewer

Length: 351 bp
ATGCTAGTTCAGTGTTGCGTAGAGCTTCTTGCTCTTCAAACCGGATTGGCATTTGTGCAACAGCAGTGTACTCACTCAGTCCTCGTTGAGACGGATTGCCAAAGAGCTGTACATGACATCAATGGATCAGCTGCTATCCTGTCTGAACATGGAATTTTAGTTGAAGACATCCGGAACACCTTAAGACGTATGCCACAAGTCAAGGTGTCTTTTGCTCCCAGAACATGCAACAAGGTTGCACATAGCTCTCGCCGATCAATTGAAACTCTCGCCGCCGCGGCCGCAATAGCTCAGCTCCGCACCGGTGGTGGTTTCAGCCGGACAGTTCTGGTGGCTCGCGAACCTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

116

Amino Acids

12.55

Weight (kDa)

8.79

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 82 2.5e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020067)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001195.1_g000023
rosa_samantha Rh2CG506000 Rh4AG405400 Rh4BG416400 Rh4CG430900 Rh4DG412000 Rh7DG432300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 278, 339
AccIII TCCGGA 1 cut(s) 171
AciI CCGC 5 cut(s) 273, 276, 278, 282, 298
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 153
AfaI GTAC 2 cut(s) 70, 111
AflII CTTAAG 1 cut(s) 181
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 3 cut(s) 38, 164, 263
AluBI AGCT 6 cut(s) 25, 107, 131, 246, 290, 295
AluI AGCT 6 cut(s) 25, 107, 131, 246, 290, 295
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 133
Aor13HI TCCGGA 1 cut(s) 171
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 153
AsiGI ACCGGT 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 5
BfrI CTTAAG 1 cut(s) 181
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 5 cut(s) 132, 273, 276, 279, 282
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 5 cut(s) 133, 274, 277, 280, 283
BpiI GAAGAC 1 cut(s) 171
Bpu1102I GCTNAGC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 3 cut(s) 41, 171, 302
Bse118I RCCGGY 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 90, 305
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 118
Bsh1236I CGCG 2 cut(s) 278, 339
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 281
BshTI ACCGGT 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 282
BsiSI CCGG 4 cut(s) 42, 172, 303, 319
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 281
Bsp13I TCCGGA 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 2 cut(s) 125, 254
Bsp1720I GCTNAGC 1 cut(s) 291
Bsp68I TCGCGA 1 cut(s) 339
BspACI CCGC 5 cut(s) 273, 276, 278, 282, 298
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 89, 304
BspEI TCCGGA 1 cut(s) 171
BspFNI CGCG 2 cut(s) 278, 339
BspPI GGATC 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 39
BspTI CTTAAG 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 125, 254
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 39
BstAFI CTTAAG 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 76, 291
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 2 cut(s) 278, 339
BstKTI GATC 2 cut(s) 128, 257
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 125, 254
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 3 cut(s) 278, 281, 287
BstNSI RCATGY 1 cut(s) 228
BstUI CGCG 2 cut(s) 278, 339
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 171
BstZI CGGCCG 1 cut(s) 279
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 17, 71
BtuMI TCGCGA 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 337
CciNI GCGGCCGC 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 302
Cfr42I CCGCGG 1 cut(s) 279
Csp6I GTAC 2 cut(s) 69, 110
CspAI ACCGGT 1 cut(s) 302
CviAII CATG 3 cut(s) 113, 149, 225
CviJI RGCY 9 cut(s) 25, 107, 131, 246, 281, 290, 295, 318, 335
CviKI_1 RGCY 9 cut(s) 25, 107, 131, 246, 281, 290, 295, 318, 335
CviQI GTAC 2 cut(s) 69, 110
DdeI CTNAG 2 cut(s) 76, 291
DpnI GATC 2 cut(s) 127, 256
DpnII GATC 2 cut(s) 125, 254
EaeI YGGCCR 1 cut(s) 279
EagI CGGCCG 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 3 cut(s) 116, 152, 228
FaiI YATR 5 cut(s) 114, 150, 191, 226, 243
FatI CATG 3 cut(s) 112, 148, 224
Fnu4HI GCNGC 5 cut(s) 132, 273, 276, 279, 282
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 5 cut(s) 132, 273, 276, 279, 282
FspBI CTAG 1 cut(s) 5
GluI GCNGC 5 cut(s) 132, 273, 276, 279, 282
HaeIII GGCC 1 cut(s) 281
HapII CCGG 4 cut(s) 42, 172, 303, 319
Hin1II CATG 3 cut(s) 116, 152, 228
HpaII CCGG 4 cut(s) 42, 172, 303, 319
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 172, 338
Hpy8I GTNNAC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 58, 228, 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 281, 287
HpyF3I CTNAG 2 cut(s) 76, 291
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 3 cut(s) 116, 152, 228
Kpn2I TCCGGA 1 cut(s) 171
KspI CCGCGG 1 cut(s) 279
Kzo9I GATC 2 cut(s) 125, 254
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 220, 300
LpnPI CCDG 7 cut(s) 55, 152, 185, 232, 314, 316, 332
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 187
MalI GATC 2 cut(s) 127, 256
MboI GATC 2 cut(s) 125, 254
MboII GAAGA 2 cut(s) 26, 176
MfeI CAATTG 1 cut(s) 258
MluCI AATT 2 cut(s) 153, 258
MnlI CCTC 1 cut(s) 92
MroI TCCGGA 1 cut(s) 171
MseI TTAA 1 cut(s) 182
MspA1I CMGCKG 2 cut(s) 131, 278
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 4 cut(s) 42, 172, 303, 319
MunI CAATTG 1 cut(s) 258
MvnI CGCG 2 cut(s) 278, 339
MwoI GCNNNNNNNGC 3 cut(s) 278, 281, 287
NdeII GATC 2 cut(s) 125, 254
NlaIII CATG 3 cut(s) 116, 152, 228
NotI GCGGCCGC 1 cut(s) 279
NruI TCGCGA 1 cut(s) 339
NspI RCATGY 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 39
PinAI ACCGGT 1 cut(s) 302
PkrI GCNGC 5 cut(s) 133, 274, 277, 280, 283
PvuII CAGCTG 1 cut(s) 131
RruI TCGCGA 1 cut(s) 339
RsaI GTAC 2 cut(s) 70, 111
RsaNI GTAC 2 cut(s) 69, 110
SacII CCGCGG 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 5 cut(s) 132, 273, 276, 279, 282
Sau3AI GATC 2 cut(s) 125, 254
Sfr303I CCGCGG 1 cut(s) 279
SgrAI CRCCGGYG 1 cut(s) 302
SgrBI CCGCGG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 2 cut(s) 153, 258
SsiI CCGC 5 cut(s) 273, 276, 278, 282, 298
SspMI CTAG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 1 cut(s) 190
TasI AATT 2 cut(s) 153, 258
TatI WGTACW 2 cut(s) 68, 109
TauI GCSGC 4 cut(s) 275, 278, 281, 284
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 2 cut(s) 17, 71
TseI GCWGC 1 cut(s) 131
TspGWI ACGGA 2 cut(s) 107, 336
TspRI CASTG 2 cut(s) 17, 71
Vha464I CTTAAG 1 cut(s) 181
XapI RAATTY 1 cut(s) 153
XceI RCATGY 1 cut(s) 228
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.