Ubiquitin carboxyl-terminal hydrolase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0001211.1_g000043 |
| rosa_roxburghii | Rroxscaffold_2G00102790 Rroxscaffold_4G00306190 |
| rosa_rugosa | Rorug01G0004900 |
| rosa_samantha | Rh2AG423900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 292 |
| AccI | GTMKAC | 1 cut(s) | 706 |
| AciI | CCGC | 1 cut(s) | 392 |
| AclWI | GGATC | 1 cut(s) | 212 |
| AcsI | RAATTY | 2 cut(s) | 98, 194 |
| AcuI | CTGAAG | 1 cut(s) | 8 |
| AcyI | GRCGYC | 1 cut(s) | 289 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 56 |
| AflIII | ACRYGT | 1 cut(s) | 667 |
| AgsI | TTSAA | 6 cut(s) | 117, 123, 182, 363, 458, 647 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 390, 422 |
| AluBI | AGCT | 3 cut(s) | 19, 650, 702 |
| AluI | AGCT | 3 cut(s) | 19, 650, 702 |
| Alw26I | GTCTC | 3 cut(s) | 143, 613, 676 |
| AlwI | GGATC | 1 cut(s) | 212 |
| AoxI | GGCC | 3 cut(s) | 158, 539, 560 |
| ApoI | RAATTY | 2 cut(s) | 98, 194 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 186 |
| AspS9I | GGNCC | 1 cut(s) | 410 |
| AvaII | GGWCC | 1 cut(s) | 410 |
| AxyI | CCTNAGG | 1 cut(s) | 543 |
| BccI | CCATC | 1 cut(s) | 232 |
| BcoDI | GTCTC | 3 cut(s) | 143, 613, 676 |
| BfaI | CTAG | 1 cut(s) | 111 |
| BfmI | CTRYAG | 2 cut(s) | 593, 722 |
| Bme18I | GGWCC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 1 cut(s) | 410 |
| BpuEI | CTTGAG | 1 cut(s) | 602 |
| BsaHI | GRCGYC | 1 cut(s) | 289 |
| BsaJI | CCNNGG | 1 cut(s) | 10 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 610, 640, 688, 718 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 56 |
| Bse21I | CCTNAGG | 1 cut(s) | 543 |
| BseDI | CCNNGG | 1 cut(s) | 10 |
| BseGI | GGATG | 2 cut(s) | 45, 401 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BseMII | CTCAG | 2 cut(s) | 75, 671 |
| BseRI | GAGGAG | 1 cut(s) | 712 |
| BshFI | GGCC | 3 cut(s) | 160, 541, 562 |
| BslFI | GGGAC | 1 cut(s) | 276 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BsmAI | GTCTC | 3 cut(s) | 143, 613, 676 |
| BsmFI | GGGAC | 1 cut(s) | 276 |
| BsnI | GGCC | 3 cut(s) | 160, 541, 562 |
| Bsp143I | GATC | 2 cut(s) | 217, 265 |
| BspACI | CCGC | 1 cut(s) | 392 |
| BspANI | GGCC | 3 cut(s) | 160, 541, 562 |
| BspCNI | CTCAG | 2 cut(s) | 76, 672 |
| BspPI | GGATC | 1 cut(s) | 212 |
| BssECI | CCNNGG | 1 cut(s) | 10 |
| BssMI | GATC | 2 cut(s) | 217, 265 |
| BssNAI | GTATAC | 1 cut(s) | 707 |
| BssNI | GRCGYC | 1 cut(s) | 289 |
| Bst1107I | GTATAC | 1 cut(s) | 707 |
| Bst4CI | ACNGT | 2 cut(s) | 504, 723 |
| BstACI | GRCGYC | 1 cut(s) | 289 |
| BstC8I | GCNNGC | 1 cut(s) | 17 |
| BstDEI | CTNAG | 5 cut(s) | 84, 543, 564, 609, 680 |
| BstF5I | GGATG | 2 cut(s) | 45, 401 |
| BstKTI | GATC | 2 cut(s) | 220, 268 |
| BstMAI | GTCTC | 3 cut(s) | 143, 613, 676 |
| BstMBI | GATC | 2 cut(s) | 217, 265 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 12 |
| BstNSI | RCATGY | 1 cut(s) | 671 |
| BstSFI | CTRYAG | 2 cut(s) | 593, 722 |
| BstX2I | RGATCY | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 217 |
| BstZ17I | GTATAC | 1 cut(s) | 707 |
| Bsu36I | CCTNAGG | 1 cut(s) | 543 |
| BsuRI | GGCC | 3 cut(s) | 160, 541, 562 |
| BtsCI | GGATG | 2 cut(s) | 45, 401 |
| BtsIMutI | CAGTG | 1 cut(s) | 324 |
| Cac8I | GCNNGC | 1 cut(s) | 17 |
| Cfr13I | GGNCC | 1 cut(s) | 410 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 375, 410 |
| CviAII | CATG | 2 cut(s) | 175, 668 |
| DdeI | CTNAG | 5 cut(s) | 84, 543, 564, 609, 680 |
| DpnI | GATC | 2 cut(s) | 219, 267 |
| DpnII | GATC | 2 cut(s) | 217, 265 |
| Eco147I | AGGCCT | 3 cut(s) | 160, 541, 562 |
| Eco47I | GGWCC | 1 cut(s) | 410 |
| Eco57I | CTGAAG | 1 cut(s) | 8 |
| Eco81I | CCTNAGG | 1 cut(s) | 543 |
| FaeI | CATG | 2 cut(s) | 178, 671 |
| FaiI | YATR | 8 cut(s) | 75, 176, 326, 473, 669, 707, 711, 713 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 174, 206 |
| FaqI | GGGAC | 1 cut(s) | 276 |
| FatI | CATG | 2 cut(s) | 174, 667 |
| FauNDI | CATATG | 1 cut(s) | 711 |
| FblI | GTMKAC | 1 cut(s) | 706 |
| FokI | GGATG | 2 cut(s) | 32, 388 |
| FspBI | CTAG | 1 cut(s) | 111 |
| HaeIII | GGCC | 3 cut(s) | 160, 541, 562 |
| Hin1I | GRCGYC | 1 cut(s) | 289 |
| Hin1II | CATG | 2 cut(s) | 178, 671 |
| HindIII | AAGCTT | 2 cut(s) | 17, 648 |
| HinfI | GANTC | 4 cut(s) | 212, 336, 398, 676 |
| Hpy166II | GTNNAC | 2 cut(s) | 335, 707 |
| Hpy188I | TCNGA | 3 cut(s) | 208, 217, 681 |
| Hpy188III | TCNNGA | 5 cut(s) | 26, 148, 363, 581, 626 |
| Hpy8I | GTNNAC | 2 cut(s) | 335, 707 |
| HpyAV | CCTTC | 6 cut(s) | 176, 245, 365, 369, 531, 594 |
| HpyCH4III | ACNGT | 2 cut(s) | 504, 723 |
| HpyCH4IV | ACGT | 1 cut(s) | 289 |
| HpyCH4V | TGCA | 3 cut(s) | 77, 475, 487 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 12 |
| HpyF3I | CTNAG | 5 cut(s) | 84, 543, 564, 609, 680 |
| HpySE526I | ACGT | 1 cut(s) | 289 |
| Hsp92I | GRCGYC | 1 cut(s) | 289 |
| Hsp92II | CATG | 2 cut(s) | 178, 671 |
| Kzo9I | GATC | 2 cut(s) | 217, 265 |
| LmnI | GCTCC | 1 cut(s) | 699 |
| LpnPI | CCDG | 6 cut(s) | 11, 138, 183, 307, 329, 581 |
| MaeI | CTAG | 1 cut(s) | 111 |
| MaeII | ACGT | 1 cut(s) | 289 |
| MalI | GATC | 2 cut(s) | 219, 267 |
| MboI | GATC | 2 cut(s) | 217, 265 |
| MboII | GAAGA | 4 cut(s) | 14, 221, 226, 538 |
| MflI | RGATCY | 1 cut(s) | 217 |
| MluCI | AATT | 5 cut(s) | 98, 194, 261, 282, 530 |
| MlyI | GAGTC | 1 cut(s) | 330 |
| MnlI | CCTC | 5 cut(s) | 20, 231, 351, 419, 690 |
| MroXI | GAANNNNTTC | 1 cut(s) | 186 |
| MseI | TTAA | 3 cut(s) | 32, 192, 260 |
| MslI | CAYNNNNRTG | 1 cut(s) | 495 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 12 |
| NdeI | CATATG | 1 cut(s) | 711 |
| NdeII | GATC | 2 cut(s) | 217, 265 |
| NlaIII | CATG | 2 cut(s) | 178, 671 |
| NspI | RCATGY | 1 cut(s) | 671 |
| PceI | AGGCCT | 3 cut(s) | 160, 541, 562 |
| PciI | ACATGT | 1 cut(s) | 667 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 99 |
| PdmI | GAANNNNTTC | 1 cut(s) | 186 |
| PfeI | GAWTC | 3 cut(s) | 212, 398, 676 |
| PleI | GAGTC | 1 cut(s) | 330 |
| PpsI | GAGTC | 1 cut(s) | 330 |
| PscI | ACATGT | 1 cut(s) | 667 |
| PspPI | GGNCC | 1 cut(s) | 410 |
| PsuI | RGATCY | 1 cut(s) | 217 |
| RseI | CAYNNNNRTG | 1 cut(s) | 495 |
| SaqAI | TTAA | 3 cut(s) | 32, 192, 260 |
| Sau3AI | GATC | 2 cut(s) | 217, 265 |
| Sau96I | GGNCC | 1 cut(s) | 410 |
| SchI | GAGTC | 1 cut(s) | 330 |
| SfcI | CTRYAG | 2 cut(s) | 593, 722 |
| SinI | GGWCC | 1 cut(s) | 410 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 495 |
| SmlI | CTYRAG | 1 cut(s) | 581 |
| SmoI | CTYRAG | 1 cut(s) | 581 |
| Sse9I | AATT | 5 cut(s) | 98, 194, 261, 282, 530 |
| SseBI | AGGCCT | 3 cut(s) | 160, 541, 562 |
| SsiI | CCGC | 1 cut(s) | 392 |
| SspMI | CTAG | 1 cut(s) | 111 |
| StuI | AGGCCT | 3 cut(s) | 160, 541, 562 |
| TaaI | ACNGT | 2 cut(s) | 504, 723 |
| TaiI | ACGT | 1 cut(s) | 292 |
| TaqI | TCGA | 2 cut(s) | 102, 147 |
| TasI | AATT | 5 cut(s) | 98, 194, 261, 282, 530 |
| TfiI | GAWTC | 3 cut(s) | 212, 398, 676 |
| Tru1I | TTAA | 3 cut(s) | 32, 192, 260 |
| Tru9I | TTAA | 3 cut(s) | 32, 192, 260 |
| TscAI | CASTG | 1 cut(s) | 324 |
| TspRI | CASTG | 1 cut(s) | 324 |
| VpaK11BI | GGWCC | 1 cut(s) | 410 |
| XapI | RAATTY | 2 cut(s) | 98, 194 |
| XceI | RCATGY | 1 cut(s) | 671 |
| XmiI | GTMKAC | 1 cut(s) | 706 |
| XmnI | GAANNNNTTC | 1 cut(s) | 186 |
| XspI | CTAG | 1 cut(s) | 111 |
| ZraI | GACGTC | 1 cut(s) | 290 |