Rroxscaffold_4G00306190

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
26975618 .. 26976166
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306190.1

Sequence Viewer

Length: 264 bp
ATGGCGGGGCTCGTATGGGATGTCACCCCGGGCACCCGGGCGCGGGGCATGGCTAGCATAGCCCATCCGATTACACAACGAGAGGGCGATAAGGCATCGGGAGAACGACTGCGGGAGAAGTTCATGACCGAGCTGGAAGAAAAGGCGGTGAGGGTAGAAGTGTCGCCGGGCACCGATATTCTCTCCGGTACTTCATCAACGGGGACACCAAGTGTCGGAGGAGAGGCGCATGGTCTCGGATTCTTGAACGGCGGAACGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.08

Weight (kDa)

6.08

Isoelectric Point (pI)

17.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021642)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001211.1_g000043
rosa_roxburghii Rroxscaffold_2G00102790 Rroxscaffold_4G00306190
rosa_rugosa Rorug01G0004900
rosa_samantha Rh2AG423900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 170
AccII CGCG 2 cut(s) 43, 259
AciI CCGC 5 cut(s) 5, 43, 112, 146, 252
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 3 cut(s) 42, 43, 215
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 239
Ama87I CYCGRG 2 cut(s) 28, 36
AspLEI GCGC 2 cut(s) 43, 229
AsuC2I CCSGG 5 cut(s) 29, 30, 37, 38, 168
AsuHPI GGTGA 2 cut(s) 16, 160
AsuNHI GCTAGC 1 cut(s) 53
AvaI CYCGRG 2 cut(s) 28, 36
BaeGI GKGCMC 2 cut(s) 35, 173
BanI GGYRCC 2 cut(s) 32, 170
BanII GRGCYC 1 cut(s) 12
BccI CCATC 1 cut(s) 72
BcnI CCSGG 5 cut(s) 29, 30, 37, 38, 168
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 54
Bme1390I CCNGG 5 cut(s) 29, 30, 37, 38, 168
BmeT110I CYCGRG 2 cut(s) 28, 36
BmiI GGNNCC 2 cut(s) 34, 172
BmrFI CCNGG 5 cut(s) 29, 30, 37, 38, 168
BmsI GCATC 1 cut(s) 104
BmtI GCTAGC 1 cut(s) 57
BpuMI CCSGG 5 cut(s) 29, 30, 37, 38, 168
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 27, 28, 36
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 43, 215
BseDI CCNNGG 3 cut(s) 27, 28, 36
BseGI GGATG 2 cut(s) 25, 64
BseLI CCNNNNNNNGG 3 cut(s) 42, 43, 215
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 2 cut(s) 35, 173
Bsh1236I CGCG 2 cut(s) 43, 259
BshNI GGYRCC 2 cut(s) 32, 170
BsiHKCI CYCGRG 2 cut(s) 28, 36
BsiSI CCGG 4 cut(s) 29, 37, 167, 186
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 3 cut(s) 42, 43, 215
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 2 cut(s) 28, 36
Bsp1286I GDGCHC 3 cut(s) 12, 35, 173
BspACI CCGC 5 cut(s) 5, 43, 112, 146, 252
BspFNI CGCG 2 cut(s) 43, 259
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 34, 172
BspOI GCTAGC 1 cut(s) 57
BspT107I GGYRCC 2 cut(s) 32, 170
BspTNI GGTCTC 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 27, 28, 36
BstC8I GCNNGC 1 cut(s) 55
BstF5I GGATG 2 cut(s) 25, 64
BstFNI CGCG 2 cut(s) 43, 259
BstHHI GCGC 2 cut(s) 43, 229
BstMAI GTCTC 1 cut(s) 239
BstMWI GCNNNNNNNGC 2 cut(s) 54, 59
BstSCI CCNGG 5 cut(s) 27, 28, 35, 36, 166
BstSLI GKGCMC 2 cut(s) 35, 173
BstUI CGCG 2 cut(s) 43, 259
BtsCI GGATG 2 cut(s) 25, 64
Cac8I GCNNGC 1 cut(s) 55
CciI TCATGA 1 cut(s) 123
CfoI GCGC 2 cut(s) 43, 229
Cfr9I CCCGGG 2 cut(s) 28, 36
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 49, 124, 230
CviJI RGCY 4 cut(s) 10, 53, 62, 133
CviKI_1 RGCY 4 cut(s) 10, 53, 62, 133
CviQI GTAC 1 cut(s) 189
DraIII CACNNNGTG 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 239
Eco88I CYCGRG 2 cut(s) 28, 36
EcoT38I GRGCYC 1 cut(s) 12
FaeI CATG 3 cut(s) 52, 127, 233
FaiI YATR 5 cut(s) 16, 50, 59, 125, 231
FaqI GGGAC 1 cut(s) 217
FatI CATG 3 cut(s) 48, 123, 229
FauI CCCGC 2 cut(s) 36, 105
FokI GGATG 2 cut(s) 32, 51
FriOI GRGCYC 1 cut(s) 12
FspBI CTAG 1 cut(s) 54
GlaI GCGC 2 cut(s) 42, 228
HapII CCGG 4 cut(s) 29, 37, 167, 186
HhaI GCGC 2 cut(s) 43, 229
Hin1II CATG 3 cut(s) 52, 127, 233
Hin6I GCGC 2 cut(s) 41, 227
HinP1I GCGC 2 cut(s) 41, 227
HinfI GANTC 1 cut(s) 240
HpaII CCGG 4 cut(s) 29, 37, 167, 186
HphI GGTGA 2 cut(s) 16, 160
Hpy188I TCNGA 3 cut(s) 69, 218, 239
Hpy188III TCNNGA 3 cut(s) 99, 124, 244
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 59
Hsp92II CATG 3 cut(s) 52, 127, 233
HspAI GCGC 2 cut(s) 41, 227
LpnPI CCDG 5 cut(s) 42, 50, 119, 180, 199
LweI GCATC 1 cut(s) 104
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 3 cut(s) 12, 35, 173
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 4 cut(s) 76, 144, 212, 217
MspI CCGG 4 cut(s) 29, 37, 167, 186
MspR9I CCNGG 5 cut(s) 29, 30, 37, 38, 168
MvnI CGCG 2 cut(s) 43, 259
MwoI GCNNNNNNNGC 2 cut(s) 54, 59
NciI CCSGG 5 cut(s) 29, 30, 37, 38, 168
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 3 cut(s) 52, 127, 233
NlaIV GGNNCC 2 cut(s) 34, 172
NmuCI GTSAC 1 cut(s) 22
PagI TCATGA 1 cut(s) 123
PfeI GAWTC 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 34, 172
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
ScrFI CCNGG 5 cut(s) 29, 30, 37, 38, 168
SduI GDGCHC 3 cut(s) 12, 35, 173
SetI ASST 1 cut(s) 135
SfaNI GCATC 1 cut(s) 104
SmaI CCCGGG 2 cut(s) 30, 38
SsiI CCGC 5 cut(s) 5, 43, 112, 146, 252
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 5 cut(s) 27, 28, 35, 36, 166
TaqII GACCGA 1 cut(s) 143
TfiI GAWTC 1 cut(s) 240
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 112, 183
TspMI CCCGGG 2 cut(s) 28, 36
XmaI CCCGGG 2 cut(s) 28, 36
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.