Ubiquitin carboxyl-terminal hydrolase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0001211.1_g000043 |
| rosa_roxburghii | Rroxscaffold_2G00102790 Rroxscaffold_4G00306190 |
| rosa_rugosa | Rorug01G0004900 |
| rosa_samantha | Rh2AG423900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 143 |
| AcsI | RAATTY | 1 cut(s) | 29 |
| AgsI | TTSAA | 3 cut(s) | 48, 54, 113 |
| AlwI | GGATC | 1 cut(s) | 143 |
| AoxI | GGCC | 1 cut(s) | 89 |
| ApeKI | GCWGC | 1 cut(s) | 199 |
| ApoI | RAATTY | 1 cut(s) | 29 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 117, 255 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 57, 90 |
| BbvI | GCAGC | 1 cut(s) | 186 |
| BccI | CCATC | 1 cut(s) | 163 |
| BclI | TGATCA | 1 cut(s) | 219 |
| BfaI | CTAG | 1 cut(s) | 42 |
| BfmI | CTRYAG | 1 cut(s) | 269 |
| BglII | AGATCT | 1 cut(s) | 125 |
| BisI | GCNGC | 1 cut(s) | 200 |
| BlsI | GCNGC | 1 cut(s) | 201 |
| BpmI | CTGGAG | 1 cut(s) | 120 |
| Bse1I | ACTGG | 2 cut(s) | 88, 212 |
| BseMII | CTCAG | 2 cut(s) | 6, 198 |
| BseNI | ACTGG | 2 cut(s) | 88, 212 |
| BseXI | GCAGC | 1 cut(s) | 186 |
| BshFI | GGCC | 1 cut(s) | 91 |
| BsnI | GGCC | 1 cut(s) | 91 |
| Bsp143I | GATC | 4 cut(s) | 125, 148, 219, 265 |
| BspANI | GGCC | 1 cut(s) | 91 |
| BspCNI | CTCAG | 2 cut(s) | 7, 199 |
| BspPI | GGATC | 1 cut(s) | 143 |
| BsrI | ACTGG | 2 cut(s) | 88, 212 |
| BssMI | GATC | 4 cut(s) | 125, 148, 219, 265 |
| BstDEI | CTNAG | 3 cut(s) | 15, 122, 207 |
| BstKTI | GATC | 4 cut(s) | 128, 151, 222, 268 |
| BstMBI | GATC | 4 cut(s) | 125, 148, 219, 265 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 208 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstSFI | CTRYAG | 1 cut(s) | 269 |
| BstV1I | GCAGC | 1 cut(s) | 186 |
| BstX2I | RGATCY | 2 cut(s) | 125, 148 |
| BstYI | RGATCY | 2 cut(s) | 125, 148 |
| BsuRI | GGCC | 1 cut(s) | 91 |
| CviAII | CATG | 3 cut(s) | 37, 106, 242 |
| CviJI | RGCY | 4 cut(s) | 91, 99, 211, 234 |
| CviKI_1 | RGCY | 4 cut(s) | 91, 99, 211, 234 |
| DdeI | CTNAG | 3 cut(s) | 15, 122, 207 |
| DpnI | GATC | 4 cut(s) | 127, 150, 221, 267 |
| DpnII | GATC | 4 cut(s) | 125, 148, 219, 265 |
| Eco147I | AGGCCT | 1 cut(s) | 91 |
| EcoRI | GAATTC | 1 cut(s) | 29 |
| FaeI | CATG | 3 cut(s) | 40, 109, 245 |
| FaiI | YATR | 7 cut(s) | 6, 38, 107, 218, 243, 249, 271 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 105, 137 |
| FatI | CATG | 3 cut(s) | 36, 105, 241 |
| FbaI | TGATCA | 1 cut(s) | 219 |
| Fnu4HI | GCNGC | 1 cut(s) | 200 |
| Fsp4HI | GCNGC | 1 cut(s) | 200 |
| FspBI | CTAG | 1 cut(s) | 42 |
| GluI | GCNGC | 1 cut(s) | 200 |
| GsuI | CTGGAG | 1 cut(s) | 120 |
| HaeIII | GGCC | 1 cut(s) | 91 |
| Hin1II | CATG | 3 cut(s) | 40, 109, 245 |
| HinfI | GANTC | 2 cut(s) | 143, 194 |
| Hpy188I | TCNGA | 2 cut(s) | 148, 208 |
| Hpy188III | TCNNGA | 2 cut(s) | 79, 137 |
| HpyAV | CCTTC | 3 cut(s) | 107, 176, 213 |
| HpyCH4V | TGCA | 1 cut(s) | 8 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 208 |
| HpyF3I | CTNAG | 3 cut(s) | 15, 122, 207 |
| Hsp92II | CATG | 3 cut(s) | 40, 109, 245 |
| Ksp22I | TGATCA | 1 cut(s) | 219 |
| Kzo9I | GATC | 4 cut(s) | 125, 148, 219, 265 |
| LpnPI | CCDG | 4 cut(s) | 69, 114, 150, 225 |
| Lsp1109I | GCAGC | 1 cut(s) | 186 |
| MaeI | CTAG | 1 cut(s) | 42 |
| MalI | GATC | 4 cut(s) | 127, 150, 221, 267 |
| MboI | GATC | 4 cut(s) | 125, 148, 219, 265 |
| MboII | GAAGA | 2 cut(s) | 152, 157 |
| MflI | RGATCY | 2 cut(s) | 125, 148 |
| MluCI | AATT | 1 cut(s) | 29 |
| MlyI | GAGTC | 1 cut(s) | 203 |
| MnlI | CCTC | 1 cut(s) | 162 |
| MroXI | GAANNNNTTC | 2 cut(s) | 117, 255 |
| MseI | TTAA | 1 cut(s) | 225 |
| MslI | CAYNNNNRTG | 2 cut(s) | 240, 246 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 208 |
| NdeII | GATC | 4 cut(s) | 125, 148, 219, 265 |
| NlaIII | CATG | 3 cut(s) | 40, 109, 245 |
| NspI | RCATGY | 1 cut(s) | 40 |
| PceI | AGGCCT | 1 cut(s) | 91 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 30 |
| PdmI | GAANNNNTTC | 2 cut(s) | 117, 255 |
| PfeI | GAWTC | 1 cut(s) | 143 |
| PkrI | GCNGC | 1 cut(s) | 201 |
| PleI | GAGTC | 1 cut(s) | 202 |
| PpsI | GAGTC | 1 cut(s) | 202 |
| PsuI | RGATCY | 2 cut(s) | 125, 148 |
| RseI | CAYNNNNRTG | 2 cut(s) | 240, 246 |
| SaqAI | TTAA | 1 cut(s) | 225 |
| SatI | GCNGC | 1 cut(s) | 200 |
| Sau3AI | GATC | 4 cut(s) | 125, 148, 219, 265 |
| SchI | GAGTC | 1 cut(s) | 203 |
| SetI | ASST | 2 cut(s) | 118, 187 |
| SfcI | CTRYAG | 1 cut(s) | 269 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 240, 246 |
| Sse9I | AATT | 1 cut(s) | 29 |
| SseBI | AGGCCT | 1 cut(s) | 91 |
| SspMI | CTAG | 1 cut(s) | 42 |
| StuI | AGGCCT | 1 cut(s) | 91 |
| TaqI | TCGA | 1 cut(s) | 33 |
| TasI | AATT | 1 cut(s) | 29 |
| TfiI | GAWTC | 1 cut(s) | 143 |
| Tru1I | TTAA | 1 cut(s) | 225 |
| Tru9I | TTAA | 1 cut(s) | 225 |
| TseI | GCWGC | 1 cut(s) | 199 |
| TspDTI | ATGAA | 1 cut(s) | 264 |
| XapI | RAATTY | 1 cut(s) | 29 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XmnI | GAANNNNTTC | 2 cut(s) | 117, 255 |
| XspI | CTAG | 1 cut(s) | 42 |