Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001211.1

Orthogroup ID

OG0007609

Physical Location & Seq

Genomic Coordinates Forward (+)

344310 .. 345435

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atggtgaagatctgttgcattggtgctggatatgtcgggggtcctacgatggcagtgattgcactcaagtgcccctctgttgaagttgttgttgttgatcttaatcagaaacggattgatgcttggaacagtgacacacttccaatttatgagcctggtcttgatgatgttgtcaaacagtgccgaggcaagaacctcttcttcagcaccaaggtggatgagagcgtaatggaagctgatatagtgtttgtctctgtcaacaccccaaccaaaacaacgggtcttggagcaggcaaagcagccgatctgacttattgggagagtgctgctcgaatgattgctcgtgtatcaaagtccagcaaaattgttgttgagaaatctacagtcccagtcaaaacagctgaggcaatagaaaagattttgacccacaacaacaaatcagaaatccaattccaaattctctcaaacccagaatttcttgctgagggaactgcaatcgaagacctttttcaccctgatcgtgtcctcattggtggcagggagacccctgaaggccagaaagctgtccaagcattgaaggatgtttatgctcagtgggtgcctgaagacaaaatcctcaccaccaatctttggtctgcagagctctccaagcttgctgccaacgcattcttggcccagagaatttcatctgtcaatgccatgtctgctctttgtgaggctacaggggccaatgttgcacaagtgtcatatgctgttggcaaggatagtaggataggaccaaagttccttaatggtagtgttggttttggtggatcttgcttccagaaggatatcctgaatctggtttacatttgcgaatgcaatggccttccagaggtggcagagtactggaaacaggtcattaagatcaatgattatcagaagagccgttttgtgaaccgtgttgttgcttccatgtttaacacagtgtccaagaagaagattgccattcttggttttgccttcaagaaagatactggtgacactagggagacccccgctattgatgtgtgccaggggttactgaagaccagatcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003979 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006065 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009225 GO:0009226 GO:0009664 GO:0009987 GO:0010393 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0030203 GO:0030312 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046394 GO:0046398 GO:0046483 GO:0048046 GO:0052546 GO:0055086 GO:0055114 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

360

Amino Acids

39.24

Weight (kDa)

8.45

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPG_MGDP_dh_N	PF03721	3 - 187	5.2e-67	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh	PF00984	211 - 305	2e-31	UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C	PF03720	329 - 356	6.1e-07	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29360 AT3G29360 AT5G15490 AT5G39320
fragaria_vesca	FvH4_7g08190
malus_domestica	MD00G1075000.v1.1 MD15G1316900.v1.1
prunus_persica	Prupe.3G257300_v2.0.a1 Prupe.3G257300_v2.0.a1 Prupe.3G257300_v2.0.a1 Prupe.7G028000_v2.0.a1
pyrus_communis	pycom01g06430 pycom15g27960
rosa_chinensis	RchiOBHm_Chr1g0340961
rosa_laevigata	RLG00000029054
rosa_multiflora	Rmu_sc0001211.1_g000083 Rmu_sc0002200.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311610
rosa_rugosa	Rorug01G0160500.1
rosa_samantha	Rh1AG175200 Rh1BG143500 Rh1CG163200 Rh1DG175100
rosa_wichuraiana	Rw1G014700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	630
AciI	CCGC	1 cut(s)	1038
AclWI	GGATC	1 cut(s)	820
AcsI	RAATTY	3 cut(s)	456, 473, 681
AcuI	CTGAAG	3 cut(s)	187, 570, 624
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	3 cut(s)	630, 841, 874
AgsI	TTSAA	3 cut(s)	83, 577, 1006
AjnI	CCWGG	2 cut(s)	154, 1053
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AleI	CACNNNNGTG	2 cut(s)	67, 212
AluBI	AGCT	5 cut(s)	236, 401, 563, 643, 652
AluI	AGCT	5 cut(s)	236, 401, 563, 643, 652
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	3 cut(s)	256, 536, 1025
AlwI	GGATC	1 cut(s)	820
AoxI	GGCC	4 cut(s)	553, 672, 726, 865
ApeKI	GCWGC	3 cut(s)	299, 326, 656
ApoI	RAATTY	3 cut(s)	456, 473, 681
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	4 cut(s)	41, 673, 726, 776
AsuHPI	GGTGA	4 cut(s)	16, 503, 610, 1031
AvaII	GGWCC	2 cut(s)	41, 776
BaeGI	GKGCMC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	645
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	3 cut(s)	507, 612, 1073
Bbv12I	GWGCWC	1 cut(s)	645
BbvCI	CCTCAGC	2 cut(s)	402, 483
BbvI	GCAGC	3 cut(s)	311, 313, 643
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	912
BciT130I	CCWGG	2 cut(s)	156, 1055
BcoDI	GTCTC	3 cut(s)	256, 536, 1025
BfaI	CTAG	1 cut(s)	1026
BfmI	CTRYAG	3 cut(s)	381, 636, 720
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	3 cut(s)	300, 327, 657
BlsI	GCNGC	3 cut(s)	301, 328, 658
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	2 cut(s)	156, 1055
Bme18I	GGWCC	2 cut(s)	41, 776
BmgT120I	GGNCC	4 cut(s)	41, 673, 726, 776
BmiI	GGNNCC	3 cut(s)	42, 600, 727
BmrFI	CCNGG	2 cut(s)	156, 1055
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	383
BpiI	GAAGAC	3 cut(s)	507, 612, 1073
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
Bpu10I	CCTNAGC	2 cut(s)	402, 483
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	102
BsaI	GGTCTC	2 cut(s)	536, 1025
BsaJI	CCNNGG	3 cut(s)	184, 210, 1054
Bsc4I	CCNNNNNNNGG	3 cut(s)	630, 841, 874
Bse1I	ACTGG	3 cut(s)	389, 893, 1021
Bse3DI	GCAATG	1 cut(s)	868
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	156, 1055
BseDI	CCNNGG	3 cut(s)	184, 210, 1054
BseGI	GGATG	2 cut(s)	223, 586
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	630, 841, 874
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	3 cut(s)	393, 474, 605
BseNI	ACTGG	3 cut(s)	389, 893, 1021
BseSI	GKGCMC	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	311, 313, 643
BshFI	GGCC	4 cut(s)	555, 674, 728, 867
BshNI	GGYRCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	3 cut(s)	630, 841, 874
BsmAI	GTCTC	3 cut(s)	256, 536, 1025
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	2 cut(s)	665, 863
BsnI	GGCC	4 cut(s)	555, 674, 728, 867
Bso31I	GGTCTC	2 cut(s)	536, 1025
Bsp1286I	GDGCHC	2 cut(s)	74, 645
Bsp143I	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
BspACI	CCGC	1 cut(s)	1038
BspANI	GGCC	4 cut(s)	555, 674, 728, 867
BspCNI	CTCAG	3 cut(s)	394, 475, 604
BspLI	GGNNCC	3 cut(s)	42, 600, 727
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	917
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	2 cut(s)	536, 1025
BsrDI	GCAATG	1 cut(s)	868
BsrI	ACTGG	3 cut(s)	389, 893, 1021
BssECI	CCNNGG	3 cut(s)	184, 210, 1054
BssMI	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	156, 1055
Bst4CI	ACNGT	5 cut(s)	131, 180, 385, 941, 967
Bst6I	CTCTTC	2 cut(s)	203, 917
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	292, 654
BstDEI	CTNAG	3 cut(s)	402, 483, 591
BstENI	CCTNNNNNAGG	1 cut(s)	872
BstF5I	GGATG	2 cut(s)	223, 586
BstKTI	GATC	7 cut(s)	12, 100, 307, 520, 815, 909, 1076
BstMAI	GTCTC	3 cut(s)	256, 536, 1025
BstMBI	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
BstMWI	GCNNNNNNNGC	9 cut(s)	59, 296, 569, 649, 662, 671, 704, 725, 734
BstNI	CCWGG	2 cut(s)	156, 1055
BstSCI	CCNGG	2 cut(s)	154, 1053
BstSFI	CTRYAG	3 cut(s)	381, 636, 720
BstSLI	GKGCMC	1 cut(s)	74
BstV1I	GCAGC	3 cut(s)	311, 313, 643
BstV2I	GAAGAC	3 cut(s)	507, 612, 1073
BstX2I	RGATCY	2 cut(s)	9, 812
BstYI	RGATCY	2 cut(s)	9, 812
BsuRI	GGCC	4 cut(s)	555, 674, 728, 867
BtsCI	GGATG	2 cut(s)	223, 586
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	5 cut(s)	60, 136, 185, 599, 972
Cac8I	GCNNGC	2 cut(s)	292, 654
Cfr13I	GGNCC	4 cut(s)	41, 673, 726, 776
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	2 cut(s)	700, 955
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	3 cut(s)	402, 483, 591
DpnI	GATC	7 cut(s)	11, 99, 306, 519, 814, 908, 1075
DpnII	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
Eam1104I	CTCTTC	2 cut(s)	203, 917
EarI	CTCTTC	2 cut(s)	203, 917
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	645
Eco31I	GGTCTC	2 cut(s)	536, 1025
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	41, 776
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	3 cut(s)	187, 570, 624
EcoICRI	GAGCTC	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	154, 1053
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	703, 958
FaiI	YATR	8 cut(s)	33, 150, 242, 588, 701, 748, 750, 956
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	2 cut(s)	699, 954
FauI	CCCGC	1 cut(s)	1045
FauNDI	CATATG	1 cut(s)	748
Fnu4HI	GCNGC	3 cut(s)	300, 327, 657
FokI	GGATG	2 cut(s)	230, 593
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	3 cut(s)	300, 327, 657
FspBI	CTAG	1 cut(s)	1026
GluI	GCNGC	3 cut(s)	300, 327, 657
HaeIII	GGCC	4 cut(s)	555, 674, 728, 867
Hin1II	CATG	2 cut(s)	703, 958
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	1 cut(s)	838
HphI	GGTGA	4 cut(s)	16, 503, 610, 1031
Hpy166II	GTNNAC	3 cut(s)	259, 847, 937
Hpy188I	TCNGA	4 cut(s)	108, 309, 442, 921
Hpy188III	TCNNGA	6 cut(s)	161, 823, 835, 872, 1006, 1077
Hpy8I	GTNNAC	3 cut(s)	259, 847, 937
HpyAV	CCTTC	5 cut(s)	545, 571, 820, 878, 1012
HpyCH4III	ACNGT	5 cut(s)	131, 180, 385, 941, 967
HpyCH4V	TGCA	6 cut(s)	18, 62, 494, 638, 737, 861
HpyF10VI	GCNNNNNNNGC	9 cut(s)	59, 296, 569, 649, 662, 671, 704, 725, 734
HpyF3I	CTNAG	3 cut(s)	402, 483, 591
Hsp92II	CATG	2 cut(s)	703, 958
Kzo9I	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
LguI	GCTCTTC	1 cut(s)	917
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	3 cut(s)	311, 313, 643
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	1026
MaeIII	GTNAC	3 cut(s)	131, 1019, 1059
MalI	GATC	7 cut(s)	11, 99, 306, 519, 814, 908, 1075
MboI	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
MboII	GAAGA	9 cut(s)	19, 190, 193, 512, 617, 934, 988, 991, 1078
MflI	RGATCY	2 cut(s)	9, 812
MhlI	GDGCHC	2 cut(s)	74, 645
MluCI	AATT	6 cut(s)	144, 363, 449, 456, 473, 681
MnlI	CCTC	9 cut(s)	85, 179, 206, 397, 478, 536, 626, 709, 868
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	4 cut(s)	102, 789, 903, 960
MslI	CAYNNNNRTG	2 cut(s)	67, 212
MspA1I	CMGCKG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	156, 1055
Mva1269I	GAATGC	2 cut(s)	665, 863
MvaI	CCWGG	2 cut(s)	156, 1055
MwoI	GCNNNNNNNGC	9 cut(s)	59, 296, 569, 649, 662, 671, 704, 725, 734
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
NlaIII	CATG	2 cut(s)	703, 958
NlaIV	GGNNCC	3 cut(s)	42, 600, 727
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	131, 1019
OliI	CACNNNNGTG	2 cut(s)	67, 212
PciSI	GCTCTTC	1 cut(s)	917
PctI	GAATGC	2 cut(s)	665, 863
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	838
PflMI	CCANNNNNTGG	1 cut(s)	630
PkrI	GCNGC	3 cut(s)	301, 328, 658
PpuMI	RGGWCCY	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	154, 1053
PspGI	CCWGG	2 cut(s)	154, 1053
PspN4I	GGNNCC	3 cut(s)	42, 600, 727
PspPI	GGNCC	4 cut(s)	41, 673, 726, 776
PspPPI	RGGWCCY	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	9, 812
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
RseI	CAYNNNNRTG	2 cut(s)	67, 212
SacI	GAGCTC	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	917
SaqAI	TTAA	4 cut(s)	102, 789, 903, 960
SatI	GCNGC	3 cut(s)	300, 327, 657
Sau3AI	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
Sau96I	GGNCC	4 cut(s)	41, 673, 726, 776
ScaI	AGTACT	1 cut(s)	887
ScrFI	CCNGG	2 cut(s)	156, 1055
SduI	GDGCHC	2 cut(s)	74, 645
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	3 cut(s)	381, 636, 720
SinI	GGWCC	2 cut(s)	41, 776
SmiMI	CAYNNNNRTG	2 cut(s)	67, 212
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	6 cut(s)	144, 363, 449, 456, 473, 681
SsiI	CCGC	1 cut(s)	1038
SspMI	CTAG	1 cut(s)	1026
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	154, 1053
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	5 cut(s)	131, 180, 385, 941, 967
TaqI	TCGA	2 cut(s)	331, 498
TasI	AATT	6 cut(s)	144, 363, 449, 456, 473, 681
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	1 cut(s)	838
Tru1I	TTAA	4 cut(s)	102, 789, 903, 960
Tru9I	TTAA	4 cut(s)	102, 789, 903, 960
TscAI	CASTG	5 cut(s)	60, 136, 185, 599, 972
TseFI	GTSAC	2 cut(s)	131, 1019
TseI	GCWGC	3 cut(s)	299, 326, 656
Tsp45I	GTSAC	2 cut(s)	131, 1019
TspDTI	ATGAA	1 cut(s)	675
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	5 cut(s)	60, 136, 185, 599, 972
Van91I	CCANNNNNTGG	1 cut(s)	630
VpaK11BI	GGWCC	2 cut(s)	41, 776
XagI	CCTNNNNNAGG	1 cut(s)	872
XapI	RAATTY	3 cut(s)	456, 473, 681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	1026
ZrmI	AGTACT	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.