Rmu_sc0001301.1_g000071

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001301.1
OG0020819
Physical Location & Seq
Forward (+)
352779 .. 356626
3848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001301.1_g000071.1.cds

Sequence Viewer

Length: 1065 bp
atgatgacggggtggaggccagttgatctatggtggtggcatggccggaagatgttggatggtaaagatatagctgggtctggtaaagcgggtccgggtccgggtcaggtcgacatgaattttgggagagaattagggcttgtccgggatacaaatagggcagcgtcttttctggctaattttctccattcttttgcttctgcttcaggtcaaaagattaattatgataagtcgtctatcttattctctaacggaattcataatatagtgttttggaaggaccctttgaatgccaaagaactgctgcaaaagatctcaaacaaattaaatggctggaaaaatgccacgctttctagagctggaaagcttactctaatcaagtccactatttctggtatgccgaaccatgttttctcgtgtttcaagtgtcctcctaggttatctaaagctattgacaaggaaactagaaattttttctggggaagggataactattcccctccagtagcttggaaagatatttgccgaccaaaaactcttggtggtttgggtgttaggcctgccactttcttcaacaaggctgccctagccaagttggggtggaatatcatatcaaacaaaaataactggtgggttgatattgttcacaggaaatatctcaggaagcattctttctttgatgctaagcctagatcttatcactccatggcttggcgtgggattctagaaagaagagacatcattactcaagctaagttatcttcgattttaccctatgatattgtgaagtttattactggtattcccctccctgcagttgatatgaatgatgagtttatttggattgaggcccaatttgaaaggtacggtgttcggcggggtgcaatttggtgcgatagattggatagtgtgtgggttgtcgattcgacttctaagagagtcgaaggctgcgtagagcagcgcgcagtgatcagtccttatcttgggactgtgaggcgccaatccggcgcaggagatggtgtttggtgtcaagctaaggggttgaggcggattgccgccgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

354

Amino Acids

40.12

Weight (kDa)

10.01

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020819)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001301.1_g000071 Rmu_sc0005979.1_g000024 Rmu_sc0007912.1_g000003
rosa_roxburghii Rroxscaffold_1G00045290 Rroxscaffold_4G00320980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 996
AccB7I CCANNNNNTGG 1 cut(s) 711
AccI GTMKAC 1 cut(s) 111
AccII CGCG 1 cut(s) 963
AciI CCGC 4 cut(s) 89, 877, 1048, 1056
AcoI YGGCCR 1 cut(s) 43
AcsI RAATTY 3 cut(s) 118, 255, 469
AcuI CTGAAG 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 997
AfaI GTAC 1 cut(s) 866
AfiI CCNNNNNNNGG 4 cut(s) 101, 597, 711, 983
AgsI TTSAA 4 cut(s) 289, 424, 574, 860
AluBI AGCT 7 cut(s) 74, 359, 367, 449, 509, 752, 1034
AluI AGCT 7 cut(s) 74, 359, 367, 449, 509, 752, 1034
Alw26I GTCTC 1 cut(s) 729
AoxI GGCC 4 cut(s) 17, 43, 557, 849
ApeKI GCWGC 5 cut(s) 161, 304, 581, 948, 958
ApoI RAATTY 3 cut(s) 118, 255, 469
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AseI ATTAAT 1 cut(s) 219
AspA2I CCTAGG 1 cut(s) 434
AspLEI GCGC 4 cut(s) 963, 965, 999, 1010
AspS9I GGNCC 4 cut(s) 92, 98, 280, 850
AsuC2I CCSGG 3 cut(s) 96, 102, 146
AvaII GGWCC 3 cut(s) 92, 98, 280
AvrII CCTAGG 1 cut(s) 434
BanI GGYRCC 1 cut(s) 996
BauI CACGAG 1 cut(s) 415
BbvI GCAGC 5 cut(s) 173, 291, 568, 935, 970
BccI CCATC 2 cut(s) 53, 1010
BciVI GTATCC 1 cut(s) 142
BclI TGATCA 1 cut(s) 969
BcnI CCSGG 3 cut(s) 96, 102, 146
BcoDI GTCTC 1 cut(s) 729
BfaI CTAG 7 cut(s) 354, 435, 465, 587, 690, 725, 1063
BfmI CTRYAG 1 cut(s) 813
BfoI RGCGCY 1 cut(s) 1000
BfuI GTATCC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 1005
BglII AGATCT 2 cut(s) 312, 692
BisI GCNGC 6 cut(s) 162, 305, 582, 949, 959, 1056
BlnI CCTAGG 1 cut(s) 434
BlpI GCTNAGC 1 cut(s) 684
BlsI GCNGC 6 cut(s) 163, 306, 583, 950, 960, 1057
Bme1390I CCNGG 3 cut(s) 96, 102, 146
Bme18I GGWCC 3 cut(s) 92, 98, 280
BmgT120I GGNCC 4 cut(s) 92, 98, 280, 850
BmiI GGNNCC 4 cut(s) 93, 99, 282, 998
BmrFI CCNGG 3 cut(s) 96, 102, 146
BmsI GCATC 1 cut(s) 670
BpmI CTGGAG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 1035
Bpu1102I GCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 732
BpuMI CCSGG 3 cut(s) 96, 102, 146
BsaHI GRCGYC 1 cut(s) 997
BsaJI CCNNGG 2 cut(s) 434, 705
BsaXI ACNNNNNCTCC 2 cut(s) 1005, 1035
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 597, 711, 983
Bse1I ACTGG 4 cut(s) 20, 503, 632, 802
BseDI CCNNGG 2 cut(s) 434, 705
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 4 cut(s) 101, 597, 711, 983
BseMII CTCAG 1 cut(s) 673
BseNI ACTGG 4 cut(s) 20, 503, 632, 802
BsePI GCGCGC 1 cut(s) 961
BseXI GCAGC 5 cut(s) 173, 291, 568, 935, 970
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 963
BshFI GGCC 4 cut(s) 19, 45, 559, 851
BshNI GGYRCC 1 cut(s) 996
BsiSI CCGG 5 cut(s) 46, 95, 101, 145, 1005
BslFI GGGAC 1 cut(s) 1000
BslI CCNNNNNNNGG 4 cut(s) 101, 597, 711, 983
BsmAI GTCTC 1 cut(s) 729
BsmFI GGGAC 1 cut(s) 1000
BsmI GAATGC 2 cut(s) 295, 667
BsnI GGCC 4 cut(s) 19, 45, 559, 851
Bsp143I GATC 4 cut(s) 25, 312, 692, 969
Bsp1720I GCTNAGC 1 cut(s) 684
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 4 cut(s) 89, 877, 1048, 1056
BspANI GGCC 4 cut(s) 19, 45, 559, 851
BspCNI CTCAG 1 cut(s) 672
BspFNI CGCG 1 cut(s) 963
BspLI GGNNCC 4 cut(s) 93, 99, 282, 998
BspMAI CTGCAG 1 cut(s) 817
BspT107I GGYRCC 1 cut(s) 996
BsrI ACTGG 4 cut(s) 20, 503, 632, 802
BssECI CCNNGG 2 cut(s) 434, 705
BssHII GCGCGC 1 cut(s) 961
BssMI GATC 4 cut(s) 25, 312, 692, 969
BssNI GRCGYC 1 cut(s) 997
BssSI CACGAG 1 cut(s) 415
BssT1I CCWWGG 2 cut(s) 434, 705
Bst2BI CACGAG 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 869, 991
Bst6I CTCTTC 1 cut(s) 727
BstACI GRCGYC 1 cut(s) 997
BstC8I GCNNGC 2 cut(s) 561, 963
BstDEI CTNAG 5 cut(s) 659, 684, 753, 933, 1035
BstDSI CCRYGG 1 cut(s) 705
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 963
BstH2I RGCGCY 1 cut(s) 1000
BstHHI GCGC 4 cut(s) 963, 965, 999, 1010
BstKTI GATC 4 cut(s) 28, 315, 695, 972
BstMAI GTCTC 1 cut(s) 729
BstMBI GATC 4 cut(s) 25, 312, 692, 969
BstMWI GCNNNNNNNGC 2 cut(s) 587, 1005
BstSCI CCNGG 3 cut(s) 94, 100, 144
BstSFI CTRYAG 1 cut(s) 813
BstUI CGCG 1 cut(s) 963
BstV1I GCAGC 5 cut(s) 173, 291, 568, 935, 970
BstX2I RGATCY 2 cut(s) 312, 692
BstXI CCANNNNNNTGG 1 cut(s) 510
BstYI RGATCY 2 cut(s) 312, 692
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 4 cut(s) 19, 45, 559, 851
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 1 cut(s) 972
Cac8I GCNNGC 2 cut(s) 561, 963
CfoI GCGC 4 cut(s) 963, 965, 999, 1010
Cfr13I GGNCC 4 cut(s) 92, 98, 280, 850
CseI GACGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 865
CviAII CATG 4 cut(s) 41, 115, 407, 706
CviQI GTAC 1 cut(s) 865
DdeI CTNAG 5 cut(s) 659, 684, 753, 933, 1035
DinI GGCGCC 1 cut(s) 998
DpnI GATC 4 cut(s) 27, 314, 694, 971
DpnII GATC 4 cut(s) 25, 312, 692, 969
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 727
EarI CTCTTC 1 cut(s) 727
EciI GGCGGA 1 cut(s) 1063
Eco130I CCWWGG 2 cut(s) 434, 705
Eco147I AGGCCT 1 cut(s) 559
Eco47I GGWCC 3 cut(s) 92, 98, 280
Eco57I CTGAAG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 255
EcoT14I CCWWGG 2 cut(s) 434, 705
EgeI GGCGCC 1 cut(s) 998
EheI GGCGCC 1 cut(s) 998
ErhI CCWWGG 2 cut(s) 434, 705
FaeI CATG 4 cut(s) 44, 118, 410, 709
FaqI GGGAC 1 cut(s) 1000
FatI CATG 4 cut(s) 40, 114, 406, 705
FauI CCCGC 2 cut(s) 82, 870
FbaI TGATCA 1 cut(s) 969
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 6 cut(s) 162, 305, 582, 949, 959, 1056
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 6 cut(s) 162, 305, 582, 949, 959, 1056
FspBI CTAG 7 cut(s) 354, 435, 465, 587, 690, 725, 1063
GlaI GCGC 4 cut(s) 962, 964, 998, 1009
GluI GCNGC 6 cut(s) 162, 305, 582, 949, 959, 1056
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 486
HaeII RGCGCY 1 cut(s) 1000
HaeIII GGCC 4 cut(s) 19, 45, 559, 851
HapII CCGG 5 cut(s) 46, 95, 101, 145, 1005
HgaI GACGC 1 cut(s) 153
HhaI GCGC 4 cut(s) 963, 965, 999, 1010
Hin1I GRCGYC 1 cut(s) 997
Hin1II CATG 4 cut(s) 44, 118, 410, 709
Hin6I GCGC 4 cut(s) 961, 963, 997, 1008
HinP1I GCGC 4 cut(s) 961, 963, 997, 1008
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 3 cut(s) 721, 923, 939
HpaII CCGG 5 cut(s) 46, 95, 101, 145, 1005
Hpy166II GTNNAC 3 cut(s) 112, 384, 646
Hpy188III TCNNGA 3 cut(s) 354, 661, 725
Hpy8I GTNNAC 3 cut(s) 112, 384, 646
HpyAV CCTTC 3 cut(s) 271, 477, 938
HpyCH4III ACNGT 2 cut(s) 869, 991
HpyCH4V TGCA 3 cut(s) 307, 815, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 587, 1005
HpyF3I CTNAG 5 cut(s) 659, 684, 753, 933, 1035
Hsp92I GRCGYC 1 cut(s) 997
Hsp92II CATG 4 cut(s) 44, 118, 410, 709
HspAI GCGC 4 cut(s) 961, 963, 997, 1008
KasI GGCGCC 1 cut(s) 996
Ksp22I TGATCA 1 cut(s) 969
Kzo9I GATC 4 cut(s) 25, 312, 692, 969
Lsp1109I GCAGC 5 cut(s) 173, 291, 568, 935, 970
LweI GCATC 1 cut(s) 670
MaeI CTAG 7 cut(s) 354, 435, 465, 587, 690, 725, 1063
MalI GATC 4 cut(s) 27, 314, 694, 971
MboI GATC 4 cut(s) 25, 312, 692, 969
MboII GAAGA 4 cut(s) 61, 562, 744, 753
MflI RGATCY 2 cut(s) 312, 692
MluCI AATT 9 cut(s) 118, 131, 178, 220, 255, 323, 469, 854, 885
Mly113I GGCGCC 1 cut(s) 997
MlyI GAGTC 1 cut(s) 948
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 7 cut(s) 9, 441, 510, 818, 841, 987, 1038
MseI TTAA 2 cut(s) 219, 326
MspI CCGG 5 cut(s) 46, 95, 101, 145, 1005
MspR9I CCNGG 3 cut(s) 96, 102, 146
Mva1269I GAATGC 2 cut(s) 295, 667
MvnI CGCG 1 cut(s) 963
MwoI GCNNNNNNNGC 2 cut(s) 587, 1005
NarI GGCGCC 1 cut(s) 997
NciI CCSGG 3 cut(s) 96, 102, 146
NcoI CCATGG 1 cut(s) 705
NdeII GATC 4 cut(s) 25, 312, 692, 969
NlaIII CATG 4 cut(s) 44, 118, 410, 709
NlaIV GGNNCC 4 cut(s) 93, 99, 282, 998
PauI GCGCGC 1 cut(s) 961
PceI AGGCCT 1 cut(s) 559
PcsI WCGNNNNNNNCGW 1 cut(s) 948
PctI GAATGC 2 cut(s) 295, 667
PfeI GAWTC 2 cut(s) 721, 923
PflMI CCANNNNNTGG 1 cut(s) 711
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 6 cut(s) 163, 306, 583, 950, 960, 1057
PleI GAGTC 1 cut(s) 947
PluTI GGCGCC 1 cut(s) 1000
PpsI GAGTC 1 cut(s) 947
PpuMI RGGWCCY 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 4 cut(s) 93, 99, 282, 998
PspPI GGNCC 4 cut(s) 92, 98, 280, 850
PspPPI RGGWCCY 1 cut(s) 280
PstI CTGCAG 1 cut(s) 817
PsuI RGATCY 2 cut(s) 312, 692
PteI GCGCGC 1 cut(s) 961
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
SalI GTCGAC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 219, 326
SatI GCNGC 6 cut(s) 162, 305, 582, 949, 959, 1056
Sau3AI GATC 4 cut(s) 25, 312, 692, 969
Sau96I GGNCC 4 cut(s) 92, 98, 280, 850
SchI GAGTC 1 cut(s) 948
ScrFI CCNGG 3 cut(s) 96, 102, 146
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 813
SfoI GGCGCC 1 cut(s) 998
SinI GGWCC 3 cut(s) 92, 98, 280
SmlI CTYRAG 1 cut(s) 747
SmoI CTYRAG 1 cut(s) 747
Sse9I AATT 9 cut(s) 118, 131, 178, 220, 255, 323, 469, 854, 885
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 4 cut(s) 89, 877, 1048, 1056
SspDI GGCGCC 1 cut(s) 996
SspMI CTAG 7 cut(s) 354, 435, 465, 587, 690, 725, 1063
StuI AGGCCT 1 cut(s) 559
StyD4I CCNGG 3 cut(s) 94, 100, 144
StyI CCWWGG 2 cut(s) 434, 705
TaaI ACNGT 2 cut(s) 869, 991
TaqI TCGA 5 cut(s) 111, 764, 921, 926, 942
TasI AATT 9 cut(s) 118, 131, 178, 220, 255, 323, 469, 854, 885
TauI GCSGC 1 cut(s) 1058
TfiI GAWTC 2 cut(s) 721, 923
Tru1I TTAA 2 cut(s) 219, 326
Tru9I TTAA 2 cut(s) 219, 326
TscAI CASTG 1 cut(s) 972
TseI GCWGC 5 cut(s) 161, 304, 581, 948, 958
TspDTI ATGAA 3 cut(s) 131, 248, 839
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 972
Van91I CCANNNNNTGG 1 cut(s) 711
VpaK11BI GGWCC 3 cut(s) 92, 98, 280
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 3 cut(s) 118, 255, 469
XbaI TCTAGA 2 cut(s) 353, 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmaJI CCTAGG 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 7 cut(s) 354, 435, 465, 587, 690, 725, 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.