Rmu_sc0007912.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007912.1
OG0020819
Physical Location & Seq
Forward (+)
9741 .. 10926
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007912.1_g000003.1.cds

Sequence Viewer

Length: 585 bp
atgccaaaccatgttatgtcttgcttcaaatgccctccaaaagttactaaagccattgacaaagaaactagatctttcttctggggtaaggattgtcattcccccccagttgcttggaaccaaatttgcttgcctaaatccttaggtggtcttggaattcggccgccagcttccttcaacaaggctgctttggcaaaactaggctggaaagtgatctctaatcatgataactgctcaggggatgaggacataaacaacattttcttctcctgcccctttgctgcaaatgtttggcgctctgctggtattatcaattcagatttccaaacctttgaagattggtttctttcttggttcaggaagaattaccaaaattttattactgaaaatcttctccttctttgttggaaaatttgggaggtgaggaataatctaattttcagacattcctcctctcttcctaacatggcggttcatgctgcggcctccattggtgagaactacagaagaaacaacccttgccacttcaagggtcctgcttctatccctcaagttatccgctggcttcgccaagctcaattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

194

Amino Acids

22.26

Weight (kDa)

9.34

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020819)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001301.1_g000071 Rmu_sc0005979.1_g000024 Rmu_sc0007912.1_g000003
rosa_roxburghii Rroxscaffold_1G00045290 Rroxscaffold_4G00320980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 164, 470, 482, 559
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 4 cut(s) 123, 156, 373, 411
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 4 cut(s) 28, 178, 335, 529
AluBI AGCT 2 cut(s) 170, 575
AluI AGCT 2 cut(s) 170, 575
AoxI GGCC 2 cut(s) 161, 483
ApeKI GCWGC 3 cut(s) 185, 281, 479
ApoI RAATTY 4 cut(s) 123, 156, 373, 411
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 533
AsuHPI GGTGA 2 cut(s) 433, 506
AvaII GGWCC 1 cut(s) 533
AxyI CCTNAGG 1 cut(s) 142
BbvI GCAGC 3 cut(s) 172, 268, 466
BfaI CTAG 2 cut(s) 69, 200
BfmI CTRYAG 1 cut(s) 502
BfoI RGCGCY 1 cut(s) 298
BglII AGATCT 1 cut(s) 71
BisI GCNGC 5 cut(s) 164, 186, 282, 480, 483
BlsI GCNGC 5 cut(s) 165, 187, 283, 481, 484
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 533
BmiI GGNNCC 2 cut(s) 119, 534
BmrI ACTGGG 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 107
Bse21I CCTNAGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 442
BseX3I CGGCCG 1 cut(s) 161
BseXI GCAGC 3 cut(s) 172, 268, 466
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 163, 485
BsiEI CGRYCG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 529
BsnI GGCC 2 cut(s) 163, 485
Bsp143I GATC 2 cut(s) 71, 213
BspACI CCGC 4 cut(s) 164, 470, 482, 559
BspANI GGCC 2 cut(s) 163, 485
BspCNI CTCAG 1 cut(s) 248
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 119, 534
BsrI ACTGG 1 cut(s) 107
BssMI GATC 2 cut(s) 71, 213
Bst6I CTCTTC 1 cut(s) 462
BstC8I GCNNGC 3 cut(s) 131, 168, 563
BstDEI CTNAG 2 cut(s) 142, 235
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 2 cut(s) 74, 216
BstMBI GATC 2 cut(s) 71, 213
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 4 cut(s) 30, 191, 476, 567
BstSFI CTRYAG 1 cut(s) 502
BstV1I GCAGC 3 cut(s) 172, 268, 466
BstX2I RGATCY 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 1 cut(s) 71
BstZI CGGCCG 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 142
BsuRI GGCC 2 cut(s) 163, 485
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 3 cut(s) 131, 168, 563
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 533
CviAII CATG 4 cut(s) 11, 224, 466, 476
CviJI RGCY 8 cut(s) 53, 163, 170, 185, 204, 485, 565, 575
CviKI_1 RGCY 8 cut(s) 53, 163, 170, 185, 204, 485, 565, 575
DdeI CTNAG 2 cut(s) 142, 235
DpnI GATC 2 cut(s) 73, 215
DpnII GATC 2 cut(s) 71, 213
EaeI YGGCCR 1 cut(s) 161
EagI CGGCCG 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
EclXI CGGCCG 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 533
Eco52I CGGCCG 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 156
FaeI CATG 4 cut(s) 14, 227, 469, 479
FaiI YATR 6 cut(s) 12, 17, 225, 251, 467, 477
FatI CATG 4 cut(s) 10, 223, 465, 475
Fnu4HI GCNGC 5 cut(s) 164, 186, 282, 480, 483
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 5 cut(s) 164, 186, 282, 480, 483
FspBI CTAG 2 cut(s) 69, 200
GlaI GCGC 1 cut(s) 296
GluI GCNGC 5 cut(s) 164, 186, 282, 480, 483
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 2 cut(s) 163, 485
HhaI GCGC 1 cut(s) 297
Hin1II CATG 4 cut(s) 14, 227, 469, 479
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HphI GGTGA 2 cut(s) 433, 506
Hpy188I TCNGA 2 cut(s) 319, 443
Hpy188III TCNNGA 2 cut(s) 224, 358
HpyAV CCTTC 2 cut(s) 184, 407
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 191, 476, 567
HpyF3I CTNAG 2 cut(s) 142, 235
Hsp92II CATG 4 cut(s) 14, 227, 469, 479
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 71, 213
Lsp1109I GCAGC 3 cut(s) 172, 268, 466
MaeI CTAG 2 cut(s) 69, 200
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 73, 215
MboI GATC 2 cut(s) 71, 213
MboII GAAGA 7 cut(s) 70, 256, 347, 373, 383, 449, 519
MflI RGATCY 1 cut(s) 71
MluCI AATT 8 cut(s) 123, 156, 313, 364, 373, 411, 435, 578
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 8 cut(s) 45, 238, 412, 417, 460, 463, 496, 558
MroXI GAANNNNTTC 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 561
MwoI GCNNNNNNNGC 4 cut(s) 30, 191, 476, 567
NdeII GATC 2 cut(s) 71, 213
NlaIII CATG 4 cut(s) 14, 227, 469, 479
NlaIV GGNNCC 2 cut(s) 119, 534
PagI TCATGA 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 390
PkrI GCNGC 5 cut(s) 165, 187, 283, 481, 484
PpuMI RGGWCCY 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 533
PspN4I GGNNCC 2 cut(s) 119, 534
PspPI GGNCC 1 cut(s) 533
PspPPI RGGWCCY 1 cut(s) 533
PsuI RGATCY 1 cut(s) 71
SatI GCNGC 5 cut(s) 164, 186, 282, 480, 483
Sau3AI GATC 2 cut(s) 71, 213
Sau96I GGNCC 1 cut(s) 533
SetI ASST 5 cut(s) 148, 172, 332, 423, 577
SfcI CTRYAG 1 cut(s) 502
SinI GGWCC 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
Sse9I AATT 8 cut(s) 123, 156, 313, 364, 373, 411, 435, 578
SsiI CCGC 4 cut(s) 164, 470, 482, 559
SspMI CTAG 2 cut(s) 69, 200
TasI AATT 8 cut(s) 123, 156, 313, 364, 373, 411, 435, 578
TauI GCSGC 2 cut(s) 166, 485
TseI GCWGC 3 cut(s) 185, 281, 479
TspDTI ATGAA 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 4 cut(s) 123, 156, 373, 411
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 2 cut(s) 69, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.