Rmu_sc0001309.1_g000009

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001309.1
OG0019650
Physical Location & Seq
Reverse (-)
64202 .. 65121
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001309.1_g000009.1.cds

Sequence Viewer

Length: 603 bp
atgaagtcgatgatgtcttcatttctcaccatttttctctgttttcaactgctcctagcggtgccaaatccacttcgagagaaaatttcagctcctgattccttcctgttggcggaaggttcctcgttgaaatgtacgagtgtaccaatgattgatagcatcttaaaaggcaacaaagatgatttggaaaggtattggccaaacttgaagcacacaaagttcgatgagagtaaaaaattctggattagtgagtggattaaacatggtagctgctccgcaaagactcctgctaattacttgagcctggtttttgatctaatgaagaaaatcaagaaatttgatgtgaaaaagatatttgaaaagcacggaattttaccaagtgatcagagagtgtatcaggtgcaagattttgcacaggcaatatttgacgaaactaaattctggacagggattgaatgcatatcgaacgtcaacgtgtcatcgacagtcaccttccccttgcctccgcccagtcacatggtatctgcaaatgaagaagagagaagcaatgctgcccagaagcttctaaagggagaagatatagatgtaaaaagcaagaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

200

Amino Acids

22.78

Weight (kDa)

8.78

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019650)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10040
rosa_chinensis RchiOBHm_Chr2g0095681
rosa_laevigata RLG00000016585
rosa_multiflora Rmu_sc0001309.1_g000009 Rmu_ssc0000215.1_g000027
rosa_samantha Rh2AG108600 Rh2DG102100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AciI CCGC 4 cut(s) 59, 113, 276, 506
AcoI YGGCCR 1 cut(s) 197
AcsI RAATTY 5 cut(s) 84, 236, 335, 369, 437
AfaI GTAC 2 cut(s) 136, 144
AfiI CCNNNNNNNGG 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 5 cut(s) 47, 130, 208, 359, 455
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 92, 270, 562
AluI AGCT 3 cut(s) 92, 270, 562
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 270, 551
ApoI RAATTY 5 cut(s) 84, 236, 335, 369, 437
AsuHPI GGTGA 2 cut(s) 19, 481
BaeI ACNNNNGTAYC 2 cut(s) 126, 159
BalI TGGCCA 1 cut(s) 199
BanI GGYRCC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 257, 538
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 382
BfaI CTAG 1 cut(s) 56
BisI GCNGC 2 cut(s) 271, 552
BlsI GCNGC 2 cut(s) 272, 553
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 63, 121
BmrFI CCNGG 1 cut(s) 305
BmrI ACTGGG 1 cut(s) 504
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 553
BseNI ACTGG 1 cut(s) 510
BseXI GCAGC 2 cut(s) 257, 538
BshFI GGCC 1 cut(s) 199
BshNI GGYRCC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 112
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 313, 382
BspACI CCGC 4 cut(s) 59, 113, 276, 506
BspANI GGCC 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 63, 121
BspT107I GGYRCC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 1 cut(s) 510
BssMI GATC 2 cut(s) 313, 382
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 531
BstKTI GATC 2 cut(s) 316, 385
BstMBI GATC 2 cut(s) 313, 382
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 257, 538
BstV2I GAAGAC 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 517
BsuRI GGCC 1 cut(s) 199
CaiI CAGNNNCTG 1 cut(s) 95
Csp6I GTAC 2 cut(s) 135, 143
CviAII CATG 2 cut(s) 263, 517
CviJI RGCY 5 cut(s) 92, 199, 270, 303, 562
CviKI_1 RGCY 5 cut(s) 92, 199, 270, 303, 562
CviQI GTAC 2 cut(s) 135, 143
DpnI GATC 2 cut(s) 315, 384
DpnII GATC 2 cut(s) 313, 382
EaeI YGGCCR 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
EciI GGCGGA 2 cut(s) 128, 495
EcoRII CCWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 461
FaeI CATG 2 cut(s) 266, 520
FaiI YATR 4 cut(s) 264, 461, 518, 581
FatI CATG 2 cut(s) 262, 516
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 271, 552
Fsp4HI GCNGC 2 cut(s) 271, 552
FspBI CTAG 1 cut(s) 56
GluI GCNGC 2 cut(s) 271, 552
HaeIII GGCC 1 cut(s) 199
Hin1II CATG 2 cut(s) 266, 520
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 2 cut(s) 98, 283
HphI GGTGA 2 cut(s) 19, 481
Hpy166II GTNNAC 2 cut(s) 143, 472
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 5 cut(s) 77, 95, 241, 331, 442
Hpy8I GTNNAC 2 cut(s) 143, 472
HpyAV CCTTC 3 cut(s) 110, 112, 502
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 468, 474
HpyCH4V TGCA 4 cut(s) 403, 413, 459, 527
HpySE526I ACGT 2 cut(s) 468, 474
Hsp92II CATG 2 cut(s) 266, 520
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 2 cut(s) 313, 382
LmnI GCTCC 3 cut(s) 57, 97, 278
Lsp1109I GCAGC 2 cut(s) 257, 538
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 468, 474
MaeIII GTNAC 2 cut(s) 487, 512
MalI GATC 2 cut(s) 315, 384
MboI GATC 2 cut(s) 313, 382
MboII GAAGA 5 cut(s) 9, 334, 545, 548, 587
MlsI TGGCCA 1 cut(s) 199
MluCI AATT 6 cut(s) 84, 236, 292, 335, 369, 437
MluNI TGGCCA 1 cut(s) 199
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 2 cut(s) 133, 513
Mox20I TGGCCA 1 cut(s) 199
Mph1103I ATGCAT 1 cut(s) 461
MscI TGGCCA 1 cut(s) 199
MseI TTAA 2 cut(s) 164, 258
Msp20I TGGCCA 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 1 cut(s) 305
NdeII GATC 2 cut(s) 313, 382
NlaIII CATG 2 cut(s) 266, 520
NlaIV GGNNCC 2 cut(s) 63, 121
NmuCI GTSAC 2 cut(s) 487, 512
NsiI ATGCAT 1 cut(s) 461
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 272, 553
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 63, 121
PstNI CAGNNNCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 136, 144
RsaNI GTAC 2 cut(s) 135, 143
SaqAI TTAA 2 cut(s) 164, 258
SatI GCNGC 2 cut(s) 271, 552
Sau3AI GATC 2 cut(s) 313, 382
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 305
SetI ASST 9 cut(s) 94, 121, 194, 272, 402, 471, 477, 494, 564
SfaNI GCATC 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 6 cut(s) 84, 236, 292, 335, 369, 437
SsiI CCGC 4 cut(s) 59, 113, 276, 506
SspI AATATT 1 cut(s) 423
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 2 cut(s) 471, 477
TaqI TCGA 5 cut(s) 8, 76, 222, 464, 482
TasI AATT 6 cut(s) 84, 236, 292, 335, 369, 437
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 164, 258
Tru9I TTAA 2 cut(s) 164, 258
TseFI GTSAC 2 cut(s) 487, 512
TseI GCWGC 2 cut(s) 270, 551
Tsp45I GTSAC 2 cut(s) 487, 512
TspDTI ATGAA 4 cut(s) 9, 17, 335, 546
TspGWI ACGGA 1 cut(s) 381
XapI RAATTY 5 cut(s) 84, 236, 335, 369, 437
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.