Rmu_sc0001700.1_g000010

Acyl-coenzyme A thioesterase 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001700.1
OG0019430
Physical Location & Seq
Reverse (-)
41196 .. 44346
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1353 bp
atggacccaaactcatctccttccaattccaacaccaccattccggtagtggcaaccctccctgtttatgggtcggactctttgacccggaagcccatcagcttgtggcccggaatgttccactcgccggtgaccaaggcactgtgggaagcgaggtctcacatgttcgagaggctgttggacccaccagtggacgctcctccacagagccaattgctgaacaagactccatcgcagagcaggactacaattctgtacaatttctctactgattttatactgagggagcagtacagggatccttggaatgaggtcagaattgggaaactgcttgaagaccttgatgctttagctggaaccatttccgtcaagttacctgctggcattgaaaagctgtcaaatctcagattgctagatgtgactgaatgtaaaagtctgcaaagcaatacaatggatgttgcttttatcccaagcttagcgaaactagaagaactgtacatgaggaatagctgcttgccatggggggttcaggaaaatgattcttccaatgagaggcaacctgcagttctgcacaacatcctgctatgtcatcagctccaaagatttaagatctctacaacagagatggatgatatgttatcgaatccaaatccttatgagaactatttgagaattgatctcgatgcagactgttctgtggctagcagaatcaacatgctttcaaagagaaccaacactctagtgttaaacatgtttagattgagggacgctctcagtctcttagatacagtgttgtatatagatccatacattgtctttcctgtattggagtcattgacgatccaaggtgccgaaatgctaaaggagatttttcatggtgaggatctgcttccaatggggtcacgtaagcaactaagcaagttgtttctgtcaaatttaccttcattgacaaatttttggaagatagaatctcaacctgaatacctgagaaatctaagaagtgttgaagtgcgttcatgtgaaagattgaagtctctgttccaattgccgggtgctagcagtctgaaggagcttgcaacgattgacatacaaaactgtagggacttggaagtgatttttgttggccttgaaggaaggggcaacaaagaacaaactaatgatcagatcaacttccctaatttgattgtcttgaatcttaaagatccatcaagcctcatggcaatcagcaaaaataattataacatgagctttctgcaagtgatcacgctgaagctcccagagctgccacaactcatcagtctggtctatccaaatagttcagctccaaaaactggctccactatactaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

450

Amino Acids

50.87

Weight (kDa)

5.58

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 258 - 367 1.1e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019430)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0282061
rosa_laevigata RLG00000012916
rosa_multiflora Rmu_sc0001700.1_g000010 Rmu_sc0001700.1_g000017
rosa_rugosa Rorug03G0141700 Rorug06G0145100
rosa_samantha Rh6BG261400 Rh6CG260300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1239
Acc36I ACCTGC 2 cut(s) 385, 568
AccB1I GGYRCC 1 cut(s) 848
AccB7I CCANNNNNTGG 1 cut(s) 1331
AclWI GGATC 6 cut(s) 293, 306, 797, 835, 891, 1196
AcsI RAATTY 2 cut(s) 934, 952
AcuI CTGAAG 2 cut(s) 1085, 1289
AfaI GTAC 3 cut(s) 257, 293, 497
AfiI CCNNNNNNNGG 6 cut(s) 68, 127, 190, 552, 1048, 1331
AflIII ACRYGT 2 cut(s) 162, 750
AgsI TTSAA 7 cut(s) 335, 389, 723, 1007, 1030, 1130, 1192
AleI CACNNNNGTG 1 cut(s) 740
Alw26I GTCTC 3 cut(s) 162, 782, 1038
AlwI GGATC 6 cut(s) 293, 306, 797, 835, 891, 1196
AoxI GGCC 2 cut(s) 107, 1123
ApeKI GCWGC 2 cut(s) 510, 1282
ApoI RAATTY 2 cut(s) 934, 952
Asp700I GAANNNNTTC 1 cut(s) 361
AspS9I GGNCC 3 cut(s) 4, 108, 181
AsuC2I CCSGG 3 cut(s) 88, 111, 1050
AsuHPI GGTGA 2 cut(s) 142, 890
AsuNHI GCTAGC 2 cut(s) 701, 1055
AvaII GGWCC 2 cut(s) 4, 181
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 848
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 497, 1269
BccI CCATC 4 cut(s) 104, 238, 619, 1213
BclI TGATCA 2 cut(s) 1159, 1260
BcnI CCSGG 3 cut(s) 88, 111, 1050
BcoDI GTCTC 3 cut(s) 162, 782, 1038
BfaI CTAG 5 cut(s) 413, 485, 702, 740, 1056
BfmI CTRYAG 2 cut(s) 561, 1096
BfuAI ACCTGC 2 cut(s) 385, 568
BglII AGATCT 1 cut(s) 609
BisI GCNGC 2 cut(s) 511, 1283
BlpI GCTNAGC 1 cut(s) 475
BlsI GCNGC 2 cut(s) 512, 1284
Bme1390I CCNGG 3 cut(s) 88, 111, 1050
Bme18I GGWCC 2 cut(s) 4, 181
BmgT120I GGNCC 3 cut(s) 4, 108, 181
BmiI GGNNCC 6 cut(s) 6, 183, 300, 358, 850, 1336
BmrFI CCNGG 3 cut(s) 88, 111, 1050
BmsI GCATC 2 cut(s) 334, 673
BmtI GCTAGC 2 cut(s) 705, 1059
BpiI GAAGAC 1 cut(s) 342
BplI GAGNNNNNCTC 2 cut(s) 754, 786
Bpu1102I GCTNAGC 1 cut(s) 475
BpuMI CCSGG 3 cut(s) 88, 111, 1050
BsaAI YACGTR 1 cut(s) 905
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 135, 302, 518, 844
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 6 cut(s) 68, 127, 190, 552, 1048, 1331
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 188, 1336
BseDI CCNNGG 4 cut(s) 135, 302, 518, 844
BseGI GGATG 3 cut(s) 460, 576, 634
BseLI CCNNNNNNNGG 6 cut(s) 68, 127, 190, 552, 1048, 1331
BseMII CTCAG 4 cut(s) 272, 418, 787, 977
BseNI ACTGG 2 cut(s) 188, 1336
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 497, 1269
BsgI GTGCAG 1 cut(s) 554
BshFI GGCC 2 cut(s) 109, 1125
BshNI GGYRCC 1 cut(s) 848
BsiSI CCGG 5 cut(s) 44, 88, 111, 128, 1049
BslFI GGGAC 2 cut(s) 779, 1115
BslI CCNNNNNNNGG 6 cut(s) 68, 127, 190, 552, 1048, 1331
BsmAI GTCTC 3 cut(s) 162, 782, 1038
BsmFI GGGAC 2 cut(s) 779, 1115
BsnI GGCC 2 cut(s) 109, 1125
Bso31I GGTCTC 1 cut(s) 162
Bsp1407I TGTACA 2 cut(s) 255, 495
Bsp1720I GCTNAGC 1 cut(s) 475
Bsp19I CCATGG 1 cut(s) 518
BspANI GGCC 2 cut(s) 109, 1125
BspCNI CTCAG 4 cut(s) 273, 417, 786, 978
BspLI GGNNCC 6 cut(s) 6, 183, 300, 358, 850, 1336
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 2 cut(s) 385, 568
BspOI GCTAGC 2 cut(s) 705, 1059
BspPI GGATC 6 cut(s) 293, 306, 797, 835, 891, 1196
BspT107I GGYRCC 1 cut(s) 848
BspTNI GGTCTC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 127
BsrGI TGTACA 2 cut(s) 255, 495
BsrI ACTGG 2 cut(s) 188, 1336
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 4 cut(s) 135, 302, 518, 844
BssT1I CCWWGG 4 cut(s) 135, 302, 518, 844
Bst4CI ACNGT 5 cut(s) 144, 495, 692, 790, 1097
BstAUI TGTACA 2 cut(s) 255, 495
BstBAI YACGTR 1 cut(s) 905
BstC8I GCNNGC 5 cut(s) 382, 515, 703, 1057, 1074
BstDEI CTNAG 8 cut(s) 281, 404, 475, 773, 781, 914, 986, 995
BstDSI CCRYGG 1 cut(s) 518
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 3 cut(s) 460, 576, 634
BstMAI GTCTC 3 cut(s) 162, 782, 1038
BstMWI GCNNNNNNNGC 1 cut(s) 1279
BstNSI RCATGY 3 cut(s) 166, 718, 754
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 3 cut(s) 86, 109, 1048
BstSFI CTRYAG 2 cut(s) 561, 1096
BstV1I GCAGC 2 cut(s) 497, 1269
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 5 cut(s) 298, 609, 802, 883, 1201
BstYI RGATCY 5 cut(s) 298, 609, 802, 883, 1201
BsuRI GGCC 2 cut(s) 109, 1125
BtgI CCRYGG 1 cut(s) 518
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 3 cut(s) 460, 576, 634
BtsIMutI CAGTG 3 cut(s) 140, 195, 795
BveI ACCTGC 2 cut(s) 385, 568
Cac8I GCNNGC 5 cut(s) 382, 515, 703, 1057, 1074
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 4, 108, 181
CseI GACGC 2 cut(s) 203, 776
Csp6I GTAC 3 cut(s) 256, 292, 496
CviAII CATG 9 cut(s) 163, 499, 519, 715, 751, 875, 1017, 1216, 1243
CviQI GTAC 3 cut(s) 256, 292, 496
DdeI CTNAG 8 cut(s) 281, 404, 475, 773, 781, 914, 986, 995
Eco130I CCWWGG 4 cut(s) 135, 302, 518, 844
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 4, 181
Eco57I CTGAAG 2 cut(s) 1085, 1289
Eco91I GGTNACC 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 130
EcoT14I CCWWGG 4 cut(s) 135, 302, 518, 844
ErhI CCWWGG 4 cut(s) 135, 302, 518, 844
FaeI CATG 9 cut(s) 166, 502, 522, 718, 754, 878, 1020, 1219, 1246
FaqI GGGAC 2 cut(s) 779, 1115
FatI CATG 9 cut(s) 162, 498, 518, 714, 750, 874, 1016, 1215, 1242
FbaI TGATCA 2 cut(s) 1159, 1260
Fnu4HI GCNGC 2 cut(s) 511, 1283
FokI GGATG 3 cut(s) 467, 563, 641
Fsp4HI GCNGC 2 cut(s) 511, 1283
FspBI CTAG 5 cut(s) 413, 485, 702, 740, 1056
GluI GCNGC 2 cut(s) 511, 1283
HaeIII GGCC 2 cut(s) 109, 1125
HapII CCGG 5 cut(s) 44, 88, 111, 128, 1049
HgaI GACGC 2 cut(s) 203, 776
Hin1II CATG 9 cut(s) 166, 502, 522, 718, 754, 878, 1020, 1219, 1246
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 8 cut(s) 77, 226, 539, 643, 708, 830, 968, 1192
HpaII CCGG 5 cut(s) 44, 88, 111, 128, 1049
HphI GGTGA 2 cut(s) 142, 890
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 5 cut(s) 76, 317, 407, 1065, 1164
Hpy188III TCNNGA 4 cut(s) 169, 530, 680, 1189
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 5 cut(s) 30, 951, 1060, 1124, 1128
HpyCH4III ACNGT 5 cut(s) 144, 495, 692, 790, 1097
HpyCH4IV ACGT 1 cut(s) 904
HpyCH4V TGCA 6 cut(s) 439, 563, 571, 686, 1076, 1255
HpyF10VI GCNNNNNNNGC 1 cut(s) 1279
HpyF3I CTNAG 8 cut(s) 281, 404, 475, 773, 781, 914, 986, 995
HpySE526I ACGT 1 cut(s) 904
Hsp92II CATG 9 cut(s) 166, 502, 522, 718, 754, 878, 1020, 1219, 1246
Ksp22I TGATCA 2 cut(s) 1159, 1260
LmnI GCTCC 7 cut(s) 202, 286, 600, 1069, 1278, 1327, 1340
Lsp1109I GCAGC 2 cut(s) 497, 1269
LweI GCATC 2 cut(s) 334, 673
MaeI CTAG 5 cut(s) 413, 485, 702, 740, 1056
MaeII ACGT 1 cut(s) 904
MaeIII GTNAC 4 cut(s) 130, 372, 418, 900
MboII GAAGA 4 cut(s) 347, 500, 534, 973
MfeI CAATTG 2 cut(s) 212, 1043
MflI RGATCY 5 cut(s) 298, 609, 802, 883, 1201
MlyI GAGTC 3 cut(s) 71, 220, 839
MmeI TCCRAC 3 cut(s) 54, 54, 159
MroXI GAANNNNTTC 1 cut(s) 361
MseI TTAA 3 cut(s) 606, 746, 1197
MslI CAYNNNNRTG 1 cut(s) 740
MspI CCGG 5 cut(s) 44, 88, 111, 128, 1049
MspR9I CCNGG 3 cut(s) 88, 111, 1050
MunI CAATTG 2 cut(s) 212, 1043
MwoI GCNNNNNNNGC 1 cut(s) 1279
NciI CCSGG 3 cut(s) 88, 111, 1050
NcoI CCATGG 1 cut(s) 518
NheI GCTAGC 2 cut(s) 701, 1055
NlaIII CATG 9 cut(s) 166, 502, 522, 718, 754, 878, 1020, 1219, 1246
NlaIV GGNNCC 6 cut(s) 6, 183, 300, 358, 850, 1336
NmuCI GTSAC 3 cut(s) 130, 418, 900
NspI RCATGY 3 cut(s) 166, 718, 754
OliI CACNNNNGTG 1 cut(s) 740
PciI ACATGT 2 cut(s) 162, 750
PdmI GAANNNNTTC 1 cut(s) 361
PfeI GAWTC 5 cut(s) 539, 643, 708, 968, 1192
PflMI CCANNNNNTGG 1 cut(s) 1331
PkrI GCNGC 2 cut(s) 512, 1284
PleI GAGTC 3 cut(s) 71, 220, 838
PpsI GAGTC 3 cut(s) 71, 220, 838
Ppu21I YACGTR 1 cut(s) 905
PscI ACATGT 2 cut(s) 162, 750
PsiI TTATAA 1 cut(s) 1239
PspEI GGTNACC 1 cut(s) 130
PspN4I GGNNCC 6 cut(s) 6, 183, 300, 358, 850, 1336
PspPI GGNCC 3 cut(s) 4, 108, 181
PstI CTGCAG 1 cut(s) 565
PsuI RGATCY 5 cut(s) 298, 609, 802, 883, 1201
RsaI GTAC 3 cut(s) 257, 293, 497
RsaNI GTAC 3 cut(s) 256, 292, 496
RseI CAYNNNNRTG 1 cut(s) 740
SaqAI TTAA 3 cut(s) 606, 746, 1197
SatI GCNGC 2 cut(s) 511, 1283
Sau96I GGNCC 3 cut(s) 4, 108, 181
SchI GAGTC 3 cut(s) 71, 220, 839
ScrFI CCNGG 3 cut(s) 88, 111, 1050
SfaNI GCATC 2 cut(s) 334, 673
SfcI CTRYAG 2 cut(s) 561, 1096
SgrAI CRCCGGYG 1 cut(s) 127
SinI GGWCC 2 cut(s) 4, 181
SmiMI CAYNNNNRTG 1 cut(s) 740
SspMI CTAG 5 cut(s) 413, 485, 702, 740, 1056
StyD4I CCNGG 3 cut(s) 86, 109, 1048
StyI CCWWGG 4 cut(s) 135, 302, 518, 844
TaaI ACNGT 5 cut(s) 144, 495, 692, 790, 1097
TaiI ACGT 1 cut(s) 907
TaqI TCGA 3 cut(s) 168, 641, 681
TatI WGTACW 3 cut(s) 255, 291, 495
TfiI GAWTC 5 cut(s) 539, 643, 708, 968, 1192
Tru1I TTAA 3 cut(s) 606, 746, 1197
Tru9I TTAA 3 cut(s) 606, 746, 1197
TscAI CASTG 3 cut(s) 147, 195, 795
TseFI GTSAC 3 cut(s) 130, 418, 900
TseI GCWGC 2 cut(s) 510, 1282
Tsp45I GTSAC 3 cut(s) 130, 418, 900
TspDTI ATGAA 3 cut(s) 863, 933, 1005
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 3 cut(s) 147, 195, 795
Van91I CCANNNNNTGG 1 cut(s) 1331
VpaK11BI GGWCC 2 cut(s) 4, 181
XapI RAATTY 2 cut(s) 934, 952
XceI RCATGY 3 cut(s) 166, 718, 754
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 361
XspI CTAG 5 cut(s) 413, 485, 702, 740, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.