Rh6CG260300

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019430
Physical Location & Seq
Reverse (-)
43265056 .. 43265559
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG260300.1

Sequence Viewer

Length: 504 bp
ATGAGAATTGATCTTGATGCAGACTCTCTTGTGGGTAGCAGAATCAATATGCTGTTAAAGAGAACCAACACTCTAGTGTTAAACATGTTTAGATTGAGGGACGCTCTCAATCTCTTAGATACAGAGTGTTGTGTAAACTTGAAGTATCTTGAGCTGAATCACTGCCATGCTCTGGAATATGTGATTGCATGCATTGTCCTTCCTGTATTGGAGTCATTGACGATCCAAGGTGCCAAAATGCTAAAGGAGATTTGTCATGGTGAGGATCTGCTTCCAGTGGGGTCACGCAAGCAACTAAGCAAGTTGTCTCTGTCAAATTTACCTTCACTGACAAATTTTTGGAAGATAGAATCTCAACCTGAATACCTGAGAAATCTAAGAAGTGTTGAAGTGTGTTCATGTGAAAGATTGAAGTCTCTATTCCAATTGCCAGGTGCAAGTAATCTGAAGGAGCTTGAAACGGTTGACATACAAAACTGCAGGGACTGGAAGAGATTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

167

Amino Acids

19.16

Weight (kDa)

7.54

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 40 - 161 2.4e-19 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019430)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0282061
rosa_laevigata RLG00000012916
rosa_multiflora Rmu_sc0001700.1_g000010 Rmu_sc0001700.1_g000017
rosa_rugosa Rorug03G0141700 Rorug06G0145100
rosa_samantha Rh6BG261400 Rh6CG260300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 172
AclWI GGATC 2 cut(s) 217, 273
AcsI RAATTY 2 cut(s) 316, 334
AcuI CTGAAG 1 cut(s) 467
AfiI CCNNNNNNNGG 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 4 cut(s) 142, 389, 412, 458
AjnI CCWGG 1 cut(s) 430
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 2 cut(s) 154, 454
AluI AGCT 2 cut(s) 154, 454
Alw26I GTCTC 2 cut(s) 312, 420
AlwI GGATC 2 cut(s) 217, 273
AlwNI CAGNNNCTG 1 cut(s) 486
ApoI RAATTY 2 cut(s) 316, 334
AsuHPI GGTGA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 432
BcoDI GTCTC 2 cut(s) 312, 420
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 478
Bme1390I CCNGG 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 7
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpuEI CTTGAG 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 275, 491
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 2 cut(s) 275, 491
BshNI GGYRCC 1 cut(s) 230
BslFI GGGAC 2 cut(s) 113, 497
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 2 cut(s) 312, 420
BsmFI GGGAC 2 cut(s) 113, 497
Bsp143I GATC 3 cut(s) 10, 222, 265
BspCNI CTCAG 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 482
BspPI GGATC 2 cut(s) 217, 273
BspT107I GGYRCC 1 cut(s) 230
BsrI ACTGG 2 cut(s) 275, 491
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 3 cut(s) 10, 222, 265
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 190, 290
BstDEI CTNAG 4 cut(s) 115, 296, 368, 377
BstKTI GATC 3 cut(s) 13, 225, 268
BstMAI GTCTC 2 cut(s) 312, 420
BstMBI GATC 3 cut(s) 10, 222, 265
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 2 cut(s) 88, 192
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 3 cut(s) 160, 282, 326
Cac8I GCNNGC 2 cut(s) 190, 290
CaiI CAGNNNCTG 1 cut(s) 486
CseI GACGC 1 cut(s) 110
CviAII CATG 5 cut(s) 85, 167, 189, 257, 399
CviJI RGCY 2 cut(s) 154, 454
CviKI_1 RGCY 2 cut(s) 154, 454
DdeI CTNAG 4 cut(s) 115, 296, 368, 377
DpnI GATC 3 cut(s) 12, 224, 267
DpnII GATC 3 cut(s) 10, 222, 265
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 5 cut(s) 88, 170, 192, 260, 402
FaiI YATR 9 cut(s) 50, 86, 168, 180, 190, 258, 400, 470, 502
FaqI GGGAC 2 cut(s) 113, 497
FatI CATG 5 cut(s) 84, 166, 188, 256, 398
FspBI CTAG 1 cut(s) 74
HgaI GACGC 1 cut(s) 110
Hin1II CATG 5 cut(s) 88, 170, 192, 260, 402
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 5 cut(s) 23, 42, 157, 212, 350
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 136, 466
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 3 cut(s) 14, 149, 173
Hpy8I GTNNAC 2 cut(s) 136, 466
HpyAV CCTTC 3 cut(s) 209, 333, 442
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 5 cut(s) 20, 188, 192, 437, 480
HpyF3I CTNAG 4 cut(s) 115, 296, 368, 377
Hsp92II CATG 5 cut(s) 88, 170, 192, 260, 402
Kzo9I GATC 3 cut(s) 10, 222, 265
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 9 cut(s) 158, 216, 288, 372, 380, 417, 444, 466, 472
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 282
MalI GATC 3 cut(s) 12, 224, 267
MboI GATC 3 cut(s) 10, 222, 265
MboII GAAGA 2 cut(s) 355, 502
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 1 cut(s) 265
MluCI AATT 4 cut(s) 6, 316, 334, 425
MlyI GAGTC 2 cut(s) 17, 221
MnlI CCTC 2 cut(s) 90, 256
Mph1103I ATGCAT 1 cut(s) 194
MseI TTAA 2 cut(s) 56, 80
MslI CAYNNNNRTG 2 cut(s) 74, 165
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 425
MvaI CCWGG 1 cut(s) 432
NdeII GATC 3 cut(s) 10, 222, 265
NlaIII CATG 5 cut(s) 88, 170, 192, 260, 402
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 194
NspI RCATGY 2 cut(s) 88, 192
OliI CACNNNNGTG 1 cut(s) 74
PaeI GCATGC 1 cut(s) 192
PciI ACATGT 1 cut(s) 84
PfeI GAWTC 3 cut(s) 42, 157, 350
PflMI CCANNNNNTGG 1 cut(s) 172
PleI GAGTC 2 cut(s) 17, 220
PpsI GAGTC 2 cut(s) 17, 220
PscI ACATGT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 486
PsuI RGATCY 1 cut(s) 265
RseI CAYNNNNRTG 2 cut(s) 74, 165
SaqAI TTAA 2 cut(s) 56, 80
Sau3AI GATC 3 cut(s) 10, 222, 265
SchI GAGTC 2 cut(s) 17, 221
ScrFI CCNGG 1 cut(s) 432
SetI ASST 7 cut(s) 156, 232, 325, 361, 369, 436, 456
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 478
SmiMI CAYNNNNRTG 2 cut(s) 74, 165
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 1 cut(s) 192
Sse9I AATT 4 cut(s) 6, 316, 334, 425
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 463
TasI AATT 4 cut(s) 6, 316, 334, 425
TfiI GAWTC 3 cut(s) 42, 157, 350
Tru1I TTAA 2 cut(s) 56, 80
Tru9I TTAA 2 cut(s) 56, 80
TscAI CASTG 3 cut(s) 167, 282, 333
TseFI GTSAC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 282
TspDTI ATGAA 1 cut(s) 387
TspRI CASTG 3 cut(s) 167, 282, 333
Van91I CCANNNNNTGG 1 cut(s) 172
XapI RAATTY 2 cut(s) 316, 334
XceI RCATGY 2 cut(s) 88, 192
XspI CTAG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.