Rh6BG261400

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0019430
Physical Location & Seq
Reverse (-)
47582939 .. 47583502
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG261400.1

Sequence Viewer

Length: 564 bp
ATGACAGATATAGATCCATACATTGTCTTTCCTGTATTGGAGTCATTGACGATCCAAGGTGCCGAAATGCTAAAGGAGATTTTTCATGGTGAGGATCTGCTTCCAATGGGGTCACGTAAGCAACTAAGCAAGTTGTTTCTGTCAAATTTACCTTCATTGACAAATTTTTGGAAGATAGAATCTCAACCTGAATACCTGAGAAATCTAAGAAGTGTTGAAGTGCGTTCATGTGAAAGATTGAAGTCTCTGTTCCAATTGCTGGGTGCTAGCAATCTGAAGGAGCTTGCAACGATTGACATACAAAACTGTAGGGACTTGGAAGTGATTTTTGTTGGCCTTGAAGGAAGGGGCAACAAAGAACAAACTAATGATCAGATCAACTTCCCTAATTTGATTGTCTTGAATCTTAAAGATCCATCAAGCCTCATGGCAATCAGCAAAAATAATTATAACATGAGCTTTCTGCAAGTGATCACGCTGAAGCTCCAAGAGCTGCCACAACTCATCAGTCTGGTCTATCCAAATAGTTCAGCTCCAAAAACTGGCTCTACTATACTAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

187

Amino Acids

21.16

Weight (kDa)

5.51

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 10 - 104 6.9e-17 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019430)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0282061
rosa_laevigata RLG00000012916
rosa_multiflora Rmu_sc0001700.1_g000010 Rmu_sc0001700.1_g000017
rosa_rugosa Rorug03G0141700 Rorug06G0145100
rosa_samantha Rh6BG261400 Rh6CG260300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 2 cut(s) 259, 542
AclWI GGATC 4 cut(s) 8, 46, 102, 407
AcsI RAATTY 2 cut(s) 145, 163
AcuI CTGAAG 2 cut(s) 296, 500
AfiI CCNNNNNNNGG 2 cut(s) 259, 542
AgsI TTSAA 4 cut(s) 218, 241, 341, 403
AluBI AGCT 5 cut(s) 283, 459, 484, 493, 533
AluI AGCT 5 cut(s) 283, 459, 484, 493, 533
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 4 cut(s) 8, 46, 102, 407
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 493
ApoI RAATTY 2 cut(s) 145, 163
AsuHPI GGTGA 1 cut(s) 101
AsuNHI GCTAGC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 480
BccI CCATC 1 cut(s) 424
BclI TGATCA 2 cut(s) 370, 471
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 1 cut(s) 494
BlsI GCNGC 1 cut(s) 495
BmiI GGNNCC 1 cut(s) 61
BmtI GCTAGC 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 542
Bse1I ACTGG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 55
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 259, 542
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 547
BseXI GCAGC 1 cut(s) 480
BseYI CCCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 259, 542
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 336
Bsp143I GATC 7 cut(s) 13, 51, 94, 370, 375, 412, 471
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 4 cut(s) 8, 46, 102, 407
BspT107I GGYRCC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 7 cut(s) 13, 51, 94, 370, 375, 412, 471
BssT1I CCWWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 268, 285
BstDEI CTNAG 3 cut(s) 125, 197, 206
BstKTI GATC 7 cut(s) 16, 54, 97, 373, 378, 415, 474
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 7 cut(s) 13, 51, 94, 370, 375, 412, 471
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 480
BstX2I RGATCY 3 cut(s) 13, 94, 412
BstYI RGATCY 3 cut(s) 13, 94, 412
BsuRI GGCC 1 cut(s) 336
Cac8I GCNNGC 2 cut(s) 268, 285
CviAII CATG 4 cut(s) 86, 228, 427, 454
CviJI RGCY 8 cut(s) 283, 336, 423, 459, 484, 493, 533, 546
CviKI_1 RGCY 8 cut(s) 283, 336, 423, 459, 484, 493, 533, 546
DdeI CTNAG 3 cut(s) 125, 197, 206
DpnI GATC 7 cut(s) 15, 53, 96, 372, 377, 414, 473
DpnII GATC 7 cut(s) 13, 51, 94, 370, 375, 412, 471
Eco130I CCWWGG 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 296, 500
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 4 cut(s) 89, 231, 430, 457
FaiI YATR 9 cut(s) 11, 19, 87, 229, 299, 428, 450, 455, 554
FaqI GGGAC 1 cut(s) 326
FatI CATG 4 cut(s) 85, 227, 426, 453
FbaI TGATCA 2 cut(s) 370, 471
Fnu4HI GCNGC 1 cut(s) 494
Fsp4HI GCNGC 1 cut(s) 494
FspBI CTAG 1 cut(s) 267
GluI GCNGC 1 cut(s) 494
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 336
Hin1II CATG 4 cut(s) 89, 231, 430, 457
HinfI GANTC 3 cut(s) 41, 179, 403
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 276, 375
Hpy188III TCNNGA 1 cut(s) 400
HpyAV CCTTC 4 cut(s) 162, 271, 335, 339
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 287, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpyF3I CTNAG 3 cut(s) 125, 197, 206
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 4 cut(s) 89, 231, 430, 457
Ksp22I TGATCA 2 cut(s) 370, 471
Kzo9I GATC 7 cut(s) 13, 51, 94, 370, 375, 412, 471
LmnI GCTCC 3 cut(s) 280, 489, 538
LpnPI CCDG 6 cut(s) 45, 201, 209, 245, 497, 528
Lsp1109I GCAGC 1 cut(s) 480
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 111
MalI GATC 7 cut(s) 15, 53, 96, 372, 377, 414, 473
MboI GATC 7 cut(s) 13, 51, 94, 370, 375, 412, 471
MboII GAAGA 1 cut(s) 184
MfeI CAATTG 1 cut(s) 254
MflI RGATCY 3 cut(s) 13, 94, 412
MluCI AATT 6 cut(s) 145, 163, 254, 388, 445, 558
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 2 cut(s) 85, 434
MseI TTAA 1 cut(s) 408
MunI CAATTG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 490
NdeII GATC 7 cut(s) 13, 51, 94, 370, 375, 412, 471
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 4 cut(s) 89, 231, 430, 457
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 179, 403
PflMI CCANNNNNTGG 2 cut(s) 259, 542
PkrI GCNGC 1 cut(s) 495
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Ppu21I YACGTR 1 cut(s) 116
PsiI TTATAA 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 61
PsuI RGATCY 3 cut(s) 13, 94, 412
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 1 cut(s) 494
Sau3AI GATC 7 cut(s) 13, 51, 94, 370, 375, 412, 471
SchI GAGTC 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 307
Sse9I AATT 6 cut(s) 145, 163, 254, 388, 445, 558
SspMI CTAG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 118
TasI AATT 6 cut(s) 145, 163, 254, 388, 445, 558
TfiI GAWTC 2 cut(s) 179, 403
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 74, 144, 216
Van91I CCANNNNNTGG 2 cut(s) 259, 542
XapI RAATTY 2 cut(s) 145, 163
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.