Rorug06G0145100

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0019430
Physical Location & Seq
Forward (+)
20709236 .. 20711158
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0145100.1

Sequence Viewer

Length: 1020 bp
ATGGAGCTGTGCATGGAAGCAAGGGCCTTGAAGTCGAGTTTTAGAGAACTGGCCTTAAAGTCGACCCAGCATGCTTTAATGGAGGAGCTTTGGTGTGCTACTGCAATTTCCGGCGTGCCCAGTGAGGATTTCTCAGTGGATGACCTTCTTGACTTCTCTAATGGCGAATTCGAAGATGGGTCCGTTGAAGAAGAACAAGAACTAGAAGAACAGGAAGAAGAAGAAGAAGAAGACAAAGACTCTGTTTCAATGGACTCTGTTGAAAATTCCAATTCCAGCAACTTAACCGAGTCAACTCTGGCCAGCCATCTCGCCGTTCCGGATGATGATTTAGCAGAGCTTGAATGGGTTTCTCACTTTGTGGACGACTCTGTTTCGGAGCTCTCTCTTCTGCACCCAGTTAGCAAGCAAAAACCGGAAGCTTTAAAAGAGAACCGGTCTGAACCGGAGGCAAGAAGACTGGCTCAGTCAAGGCTTTCATGGCTTCCCTCGCAGGTCCCGGTCAAAGCCAGAAGCAAACGTTGCAGACCAGCTGGTCGGTCTCGGTCATTGTGGAACCCACTTGGTGACTCACCGTCTTTAACGCCTTGTTTATCTTCGCCGTCGTCATCGTCTTGTTCTTCAGGGTTTTCATTGTCAACGCCTTGTCTTATATTCACCAGCCCGGTTCACAACATGGGGTTGTTTTCAGGAGAACCGGCTGCCAAGAAGCAAAAGAGAAAGCCGGCGGTTCAAACCGGTGATGAGGTTATAGTTGGGATTCAGAGGAAGTGCAGCCATTGCCAAGTTCAGAAGACCCCGCAGTGGAGAACCGGTCCACTCGGACCCAAGACGCTGTGTAATGCGTGTGGGGTTCGATACAAGTCCGGCCGGCTGTTTCCGGAGTATAGACCGGCTTGTAGTCCGACTTTTTCGGGTGATGTTCACTCGAATAGTCATCGAAAAGTTTTGGAGATGAGGAAGAGGAAAGATACCGGTGAGCCGGAACCAGGGATGAGCAAGATGATTCCGGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

339

Amino Acids

37.46

Weight (kDa)

5.29

Isoelectric Point (pI)

67.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 258 - 291 1.8e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019430)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0282061
rosa_laevigata RLG00000012916
rosa_multiflora Rmu_sc0001700.1_g000010 Rmu_sc0001700.1_g000017
rosa_rugosa Rorug03G0141700 Rorug06G0145100
rosa_samantha Rh6BG261400 Rh6CG260300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 534
Acc36I ACCTGC 1 cut(s) 484
AccI GTMKAC 1 cut(s) 62
AccIII TCCGGA 2 cut(s) 319, 880
AciI CCGC 2 cut(s) 728, 800
AclI AACGTT 1 cut(s) 520
AcoI YGGCCR 2 cut(s) 300, 868
AcsI RAATTY 2 cut(s) 167, 265
AcuI CTGAAG 1 cut(s) 606
AdeI CACNNNGTG 2 cut(s) 361, 566
AfiI CCNNNNNNNGG 2 cut(s) 804, 989
AgeI ACCGGT 4 cut(s) 435, 737, 812, 974
AgsI TTSAA 6 cut(s) 31, 188, 249, 263, 344, 734
AhdI GACNNNNNGTC 1 cut(s) 574
AjnI CCWGG 1 cut(s) 988
AluBI AGCT 6 cut(s) 7, 88, 340, 382, 422, 533
AluI AGCT 6 cut(s) 7, 88, 340, 382, 422, 533
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 1 cut(s) 546
Aor13HI TCCGGA 2 cut(s) 319, 880
AoxI GGCC 4 cut(s) 24, 51, 300, 868
ApeKI GCWGC 2 cut(s) 701, 774
ApoI RAATTY 2 cut(s) 167, 265
AsiGI ACCGGT 4 cut(s) 435, 737, 812, 974
AspS9I GGNCC 5 cut(s) 24, 180, 496, 815, 824
AsuC2I CCSGG 3 cut(s) 500, 665, 1011
AsuHPI GGTGA 6 cut(s) 564, 578, 649, 752, 929, 989
AsuII TTCGAA 1 cut(s) 171
AvaII GGWCC 4 cut(s) 180, 496, 815, 824
BaeGI GKGCMC 1 cut(s) 120
BalI TGGCCA 1 cut(s) 302
BanII GRGCYC 1 cut(s) 384
BbsI GAAGAC 3 cut(s) 237, 463, 800
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 688, 786
BccI CCATC 2 cut(s) 170, 315
BceAI ACGGC 2 cut(s) 299, 586
BciT130I CCWGG 1 cut(s) 990
BcnI CCSGG 3 cut(s) 500, 665, 1011
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 484
BisI GCNGC 2 cut(s) 702, 775
BlsI GCNGC 2 cut(s) 703, 776
Bme1390I CCNGG 4 cut(s) 500, 665, 990, 1011
Bme18I GGWCC 4 cut(s) 180, 496, 815, 824
BmeRI GACNNNNNGTC 1 cut(s) 574
BmgT120I GGNCC 5 cut(s) 24, 180, 496, 815, 824
BmiI GGNNCC 5 cut(s) 181, 498, 557, 826, 987
BmrFI CCNGG 4 cut(s) 500, 665, 990, 1011
BmrI ACTGGG 2 cut(s) 114, 392
BmuI ACTGGG 2 cut(s) 114, 392
BpiI GAAGAC 3 cut(s) 237, 463, 800
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu14I TTCGAA 1 cut(s) 171
BpuMI CCSGG 3 cut(s) 500, 665, 1011
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 989
BsaWI WCCGGW 8 cut(s) 319, 415, 435, 445, 737, 812, 880, 974
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 799, 829
Bsc4I CCNNNNNNNGG 2 cut(s) 804, 989
Bse118I RCCGGY 8 cut(s) 435, 697, 724, 737, 812, 870, 892, 974
Bse1I ACTGG 4 cut(s) 54, 120, 398, 465
Bse3DI GCAATG 1 cut(s) 778
BseAI TCCGGA 2 cut(s) 319, 880
BseBI CCWGG 1 cut(s) 990
BseDI CCNNGG 1 cut(s) 989
BseGI GGATG 3 cut(s) 145, 328, 999
BseLI CCNNNNNNNGG 2 cut(s) 804, 989
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 2 cut(s) 147, 479
BseNI ACTGG 4 cut(s) 54, 120, 398, 465
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 120
BseX3I CGGCCG 1 cut(s) 868
BseXI GCAGC 2 cut(s) 688, 786
BseYI CCCAGC 1 cut(s) 66
BsgI GTGCAG 2 cut(s) 377, 793
Bsh1285I CGRYCG 1 cut(s) 871
BshFI GGCC 4 cut(s) 26, 53, 302, 870
BshTI ACCGGT 4 cut(s) 435, 737, 812, 974
BsiEI CGRYCG 1 cut(s) 871
BsiHKAI GWGCWC 1 cut(s) 384
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 2 cut(s) 804, 989
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 4 cut(s) 26, 53, 302, 870
Bso31I GGTCTC 1 cut(s) 546
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 120, 384
Bsp13I TCCGGA 2 cut(s) 319, 880
BspACI CCGC 2 cut(s) 728, 800
BspANI GGCC 4 cut(s) 26, 53, 302, 870
BspCNI CTCAG 2 cut(s) 146, 478
BspEI TCCGGA 2 cut(s) 319, 880
BspLI GGNNCC 5 cut(s) 181, 498, 557, 826, 987
BspMI ACCTGC 1 cut(s) 484
BspT104I TTCGAA 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 546
BsrDI GCAATG 1 cut(s) 778
BsrFI RCCGGY 8 cut(s) 435, 697, 724, 737, 812, 870, 892, 974
BsrI ACTGG 4 cut(s) 54, 120, 398, 465
BssAI RCCGGY 8 cut(s) 435, 697, 724, 737, 812, 870, 892, 974
BssECI CCNNGG 1 cut(s) 989
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 1 cut(s) 576
Bst6I CTCTTC 2 cut(s) 393, 956
BstAPI GCANNNNNTGC 2 cut(s) 522, 780
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 6 cut(s) 72, 116, 304, 407, 726, 872
BstDEI CTNAG 2 cut(s) 133, 465
BstF5I GGATG 3 cut(s) 145, 328, 999
BstMAI GTCTC 1 cut(s) 546
BstMCI CGRYCG 1 cut(s) 871
BstMWI GCNNNNNNNGC 4 cut(s) 481, 490, 522, 780
BstNI CCWGG 1 cut(s) 990
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 4 cut(s) 498, 663, 988, 1009
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 688, 786
BstV2I GAAGAC 3 cut(s) 237, 463, 800
BstZI CGGCCG 1 cut(s) 868
BsuRI GGCC 4 cut(s) 26, 53, 302, 870
BtsCI GGATG 3 cut(s) 145, 328, 999
BtsI GCAGTG 1 cut(s) 809
BtsIMutI CAGTG 3 cut(s) 127, 141, 809
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 6 cut(s) 72, 116, 304, 407, 726, 872
Cfr10I RCCGGY 8 cut(s) 435, 697, 724, 737, 812, 870, 892, 974
Cfr13I GGNCC 5 cut(s) 24, 180, 496, 815, 824
CseI GACGC 1 cut(s) 841
CspAI ACCGGT 4 cut(s) 435, 737, 812, 974
CviAII CATG 4 cut(s) 13, 71, 480, 676
DdeI CTNAG 2 cut(s) 133, 465
DraI TTTAAA 1 cut(s) 426
DraIII CACNNNGTG 2 cut(s) 361, 566
DrdI GACNNNNNNGTC 1 cut(s) 534
DriI GACNNNNNGTC 1 cut(s) 574
DseDI GACNNNNNNGTC 1 cut(s) 534
EaeI YGGCCR 2 cut(s) 300, 868
EagI CGGCCG 1 cut(s) 868
Eam1104I CTCTTC 2 cut(s) 393, 956
Eam1105I GACNNNNNGTC 1 cut(s) 574
EarI CTCTTC 2 cut(s) 393, 956
Ecl136II GAGCTC 1 cut(s) 382
EclXI CGGCCG 1 cut(s) 868
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 546
Eco47I GGWCC 4 cut(s) 180, 496, 815, 824
Eco52I CGGCCG 1 cut(s) 868
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 606
EcoICRI GAGCTC 1 cut(s) 382
EcoO109I RGGNCCY 2 cut(s) 24, 496
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 988
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 4 cut(s) 16, 74, 483, 679
FaiI YATR 7 cut(s) 14, 72, 481, 653, 677, 752, 888
FaqI GGGAC 1 cut(s) 482
FatI CATG 4 cut(s) 12, 70, 479, 675
FauI CCCGC 1 cut(s) 807
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 2 cut(s) 702, 775
FokI GGATG 3 cut(s) 152, 335, 1006
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 702, 775
FspBI CTAG 1 cut(s) 203
GluI GCNGC 2 cut(s) 702, 775
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 4 cut(s) 26, 53, 302, 870
HgaI GACGC 1 cut(s) 841
Hin1II CATG 4 cut(s) 16, 74, 483, 679
HincII GTYRAC 3 cut(s) 63, 294, 639
HindII GTYRAC 3 cut(s) 63, 294, 639
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 7 cut(s) 239, 254, 290, 368, 569, 760, 1006
HphI GGTGA 6 cut(s) 564, 578, 649, 752, 929, 989
Hpy166II GTNNAC 7 cut(s) 63, 294, 364, 639, 670, 818, 925
Hpy188I TCNGA 6 cut(s) 379, 442, 765, 792, 824, 906
Hpy188III TCNNGA 4 cut(s) 149, 320, 690, 881
Hpy8I GTNNAC 7 cut(s) 63, 294, 364, 639, 670, 818, 925
Hpy99I CGWCG 1 cut(s) 607
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 576
HpyCH4IV ACGT 1 cut(s) 520
HpyCH4V TGCA 5 cut(s) 12, 104, 394, 525, 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 481, 490, 522, 780
HpyF3I CTNAG 2 cut(s) 133, 465
HpySE526I ACGT 1 cut(s) 520
Hsp92II CATG 4 cut(s) 16, 74, 483, 679
Kpn2I TCCGGA 2 cut(s) 319, 880
KroI GCCGGC 2 cut(s) 724, 870
KroNI GCCGGC 2 cut(s) 726, 872
LmnI GCTCC 3 cut(s) 4, 85, 379
Lsp1109I GCAGC 2 cut(s) 688, 786
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 520
MaeIII GTNAC 1 cut(s) 566
MhlI GDGCHC 2 cut(s) 120, 384
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 4 cut(s) 105, 167, 265, 271
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 5 cut(s) 233, 248, 299, 362, 563
MmeI TCCRAC 1 cut(s) 929
MnlI CCTC 8 cut(s) 76, 118, 442, 499, 739, 759, 951, 957
Mox20I TGGCCA 1 cut(s) 302
MroI TCCGGA 2 cut(s) 319, 880
MroNI GCCGGC 2 cut(s) 724, 870
MscI TGGCCA 1 cut(s) 302
MseI TTAA 5 cut(s) 56, 77, 284, 425, 581
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 533
MspR9I CCNGG 4 cut(s) 500, 665, 990, 1011
MvaI CCWGG 1 cut(s) 990
MwoI GCNNNNNNNGC 4 cut(s) 481, 490, 522, 780
NaeI GCCGGC 2 cut(s) 726, 872
NciI CCSGG 3 cut(s) 500, 665, 1011
NgoMIV GCCGGC 2 cut(s) 724, 870
NlaIII CATG 4 cut(s) 16, 74, 483, 679
NlaIV GGNNCC 5 cut(s) 181, 498, 557, 826, 987
NmuCI GTSAC 1 cut(s) 566
NspI RCATGY 1 cut(s) 74
NspV TTCGAA 1 cut(s) 171
PaeI GCATGC 1 cut(s) 74
PdiI GCCGGC 2 cut(s) 726, 872
PfeI GAWTC 2 cut(s) 760, 1006
PinAI ACCGGT 4 cut(s) 435, 737, 812, 974
PkrI GCNGC 2 cut(s) 703, 776
PleI GAGTC 5 cut(s) 233, 248, 298, 362, 563
PpsI GAGTC 5 cut(s) 233, 248, 298, 362, 563
PpuMI RGGWCCY 1 cut(s) 496
Psp124BI GAGCTC 1 cut(s) 384
Psp1406I AACGTT 1 cut(s) 520
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 988
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 5 cut(s) 181, 498, 557, 826, 987
PspPI GGNCC 5 cut(s) 24, 180, 496, 815, 824
PspPPI RGGWCCY 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 533
SacI GAGCTC 1 cut(s) 384
SalI GTCGAC 1 cut(s) 61
SaqAI TTAA 5 cut(s) 56, 77, 284, 425, 581
SatI GCNGC 2 cut(s) 702, 775
Sau96I GGNCC 5 cut(s) 24, 180, 496, 815, 824
SchI GAGTC 5 cut(s) 233, 248, 299, 362, 563
ScrFI CCNGG 4 cut(s) 500, 665, 990, 1011
SduI GDGCHC 2 cut(s) 120, 384
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 4 cut(s) 180, 496, 815, 824
SphI GCATGC 1 cut(s) 74
Sse9I AATT 4 cut(s) 105, 167, 265, 271
SsiI CCGC 2 cut(s) 728, 800
SspMI CTAG 1 cut(s) 203
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 4 cut(s) 498, 663, 988, 1009
TaaI ACNGT 1 cut(s) 576
TaiI ACGT 1 cut(s) 523
TaqI TCGA 6 cut(s) 35, 62, 171, 856, 929, 940
TaqII GACCGA 2 cut(s) 528, 534
TasI AATT 4 cut(s) 105, 167, 265, 271
TfiI GAWTC 2 cut(s) 760, 1006
Tru1I TTAA 5 cut(s) 56, 77, 284, 425, 581
Tru9I TTAA 5 cut(s) 56, 77, 284, 425, 581
TscAI CASTG 3 cut(s) 127, 141, 809
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 2 cut(s) 701, 774
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 2 cut(s) 468, 621
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 3 cut(s) 127, 141, 809
VpaK11BI GGWCC 4 cut(s) 180, 496, 815, 824
XapI RAATTY 2 cut(s) 167, 265
XceI RCATGY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 62
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.