Rmu_sc0001714.1_g000005

Oxidoreductase family, C-terminal alpha/beta domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001714.1
OG0014074
Physical Location & Seq
Forward (+)
7893 .. 10237
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
atggctgttgcttcaaacatagtcaagtatgggattgtaggggtgggtatgatgggtcgagagcacctcatcaatttgcaccatcttcgctcggaaggcgtggccgtggtagccatagctgacccccatgttccttcccaaaaactcgccttggacttggctcactctttcaattggcctctaaaggttttttcagggcataaggagctgttggatagtcttctctgtgatgtggtggttgtgtcaactccaaatatgacccatcatcatattctaatggatataattaaccaccccaaaccccaccaggtactggtggagaagccgttgtgtaccacagttgctcactgcaaagaggttattgaagccgctagaaagaggcaggatatgttggtgcaagttggactggagtatagatacatgccgcctgttgctaaactgataaacatagtaaagggtggaagtcttgggcaggtcaaaatggtggcaatccgagaacacaggtttcctttcttggttaaggtcaacaattggaaccggtttaatgttaactctggggggacactggtagagaagtgctgtcacttctttgatttgatgaggctgtttgctggagctaatccttttcgtgtgatggcttctggagccattgatgttaaccacaaagatgaaatatatgatgggaaggtaccagatataattgacaatgcatatgttattgtcgaatttgataatggtgctcgtgggatgcttgacctttgtatgtttgctgaagggagtaaaaatgagcaagaaatatcggtggttggtgatgtcggaaaggtagttctctttgtctccctctccctctctgattatcctctgcattataggtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

292

Amino Acids

32.59

Weight (kDa)

6.97

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GFO_IDH_MocA PF01408 9 - 135 3.1e-26 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3 PF22725 145 - 275 1.9e-15 GFO/IDH/MocA C-terminal domain
GFO_IDH_MocA_C PF02894 151 - 276 5.9e-27 Oxidoreductase family, C-terminal alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17370
fragaria_vesca FvH4_5g19170 FvH4_5g19170
malus_domestica MD04G1062400.v1.1
prunus_persica Prupe.5G066000_v2.0.a1 Prupe.5G066000_v2.0.a1 Prupe.5G066000_v2.0.a1
pyrus_communis pycom04g05590
rosa_chinensis RchiOBHm_Chr7g0203711
rosa_laevigata RLG00000003511
rosa_multiflora Rmu_sc0001714.1_g000005 Rmu_sc0005354.1_g000002
rosa_roxburghii Rroxscaffold_3G00253600
rosa_rugosa Rorug07G0078100.1
rosa_samantha Rh7BG207000 Rh7DG214900
rosa_wichuraiana Rw7G018120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 463
Acc65I GGTACC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 688
AccB7I CCANNNNNTGG 1 cut(s) 313
AciI CCGC 2 cut(s) 369, 425
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 725
AcuI CTGAAG 1 cut(s) 792
AfaI GTAC 3 cut(s) 312, 334, 690
AfiI CCNNNNNNNGG 1 cut(s) 313
AgeI ACCGGT 1 cut(s) 537
AgsI TTSAA 3 cut(s) 15, 172, 365
AjnI CCWGG 1 cut(s) 306
AloI GAACNNNNNNTCC 2 cut(s) 810, 842
AluBI AGCT 3 cut(s) 119, 208, 617
AluI AGCT 3 cut(s) 119, 208, 617
Alw21I GWGCWC 2 cut(s) 66, 742
Alw26I GTCTC 1 cut(s) 841
AlwNI CAGNNNCTG 1 cut(s) 313
AoxI GGCC 2 cut(s) 102, 176
ApoI RAATTY 1 cut(s) 725
AsiGI ACCGGT 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 688
AsuHPI GGTGA 1 cut(s) 821
BanI GGYRCC 1 cut(s) 688
BauI CACGAG 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 66, 742
BccI CCATC 5 cut(s) 46, 90, 270, 628, 674
BceAI ACGGC 2 cut(s) 89, 310
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 841
BfaI CTAG 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 463
BisI GCNGC 2 cut(s) 369, 425
BlsI GCNGC 2 cut(s) 370, 426
Bme1390I CCNGG 1 cut(s) 308
BmiI GGNNCC 3 cut(s) 536, 646, 690
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BpmI CTGGAG 3 cut(s) 428, 633, 663
BsaJI CCNNGG 2 cut(s) 105, 150
BsaWI WCCGGW 1 cut(s) 537
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse118I RCCGGY 1 cut(s) 537
Bse1I ACTGG 3 cut(s) 318, 411, 570
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 105, 150
BseGI GGATG 1 cut(s) 753
BseLI CCNNNNNNNGG 1 cut(s) 313
BseNI ACTGG 3 cut(s) 318, 411, 570
BshFI GGCC 2 cut(s) 104, 178
BshNI GGYRCC 1 cut(s) 688
BshTI ACCGGT 1 cut(s) 537
BsiHKAI GWGCWC 2 cut(s) 66, 742
BsiSI CCGG 1 cut(s) 538
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 841
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 2 cut(s) 104, 178
Bsp1286I GDGCHC 2 cut(s) 66, 742
BspACI CCGC 2 cut(s) 369, 425
BspANI GGCC 2 cut(s) 104, 178
BspLI GGNNCC 3 cut(s) 536, 646, 690
BspMI ACCTGC 1 cut(s) 463
BspT107I GGYRCC 1 cut(s) 688
BsrFI RCCGGY 1 cut(s) 537
BsrI ACTGG 3 cut(s) 318, 411, 570
BssAI RCCGGY 1 cut(s) 537
BssECI CCNNGG 2 cut(s) 105, 150
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 753
BstMAI GTCTC 1 cut(s) 841
BstMWI GCNNNNNNNGC 4 cut(s) 96, 110, 205, 644
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 2 cut(s) 104, 178
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 753
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 346, 563
BveI ACCTGC 1 cut(s) 463
CaiI CAGNNNCTG 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 537
CsiI ACCWGGT 1 cut(s) 306
Csp6I GTAC 3 cut(s) 311, 333, 689
CspAI ACCGGT 1 cut(s) 537
CviAII CATG 2 cut(s) 128, 421
CviQI GTAC 3 cut(s) 311, 333, 689
EaeI YGGCCR 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 792
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 712
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 131, 424
FaqI GGGAC 1 cut(s) 574
FatI CATG 2 cut(s) 127, 420
FauNDI CATATG 1 cut(s) 712
Fnu4HI GCNGC 2 cut(s) 369, 425
FokI GGATG 1 cut(s) 760
Fsp4HI GCNGC 2 cut(s) 369, 425
FspBI CTAG 1 cut(s) 372
GluI GCNGC 2 cut(s) 369, 425
GsuI CTGGAG 3 cut(s) 428, 633, 663
HaeIII GGCC 2 cut(s) 104, 178
HapII CCGG 1 cut(s) 538
Hin1II CATG 2 cut(s) 131, 424
HincII GTYRAC 4 cut(s) 246, 526, 550, 658
HindII GTYRAC 4 cut(s) 246, 526, 550, 658
HpaI GTTAAC 2 cut(s) 550, 658
HpaII CCGG 1 cut(s) 538
HphI GGTGA 1 cut(s) 821
Hpy166II GTNNAC 5 cut(s) 246, 333, 526, 550, 658
Hpy188I TCNGA 4 cut(s) 94, 494, 818, 853
Hpy188III TCNNGA 2 cut(s) 59, 642
Hpy8I GTNNAC 5 cut(s) 246, 333, 526, 550, 658
HpyAV CCTTC 4 cut(s) 89, 144, 679, 767
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 5 cut(s) 79, 351, 397, 710, 865
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 110, 205, 644
Hsp92II CATG 2 cut(s) 131, 424
KpnI GGTACC 1 cut(s) 692
KspAI GTTAAC 2 cut(s) 550, 658
LmnI GCTCC 3 cut(s) 205, 614, 644
LweI GCATC 1 cut(s) 738
MabI ACCWGGT 1 cut(s) 306
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 581
MboII GAAGA 2 cut(s) 77, 212
MfeI CAATTG 2 cut(s) 172, 529
MhlI GDGCHC 2 cut(s) 66, 742
MluCI AATT 6 cut(s) 73, 172, 285, 529, 699, 725
MmeI TCCRAC 3 cut(s) 192, 382, 796
MnlI CCTC 8 cut(s) 77, 189, 349, 372, 594, 851, 857, 870
Mph1103I ATGCAT 1 cut(s) 712
MseI TTAA 5 cut(s) 288, 519, 543, 549, 657
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 1 cut(s) 538
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 2 cut(s) 172, 529
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 4 cut(s) 96, 110, 205, 644
NdeI CATATG 1 cut(s) 712
NlaIII CATG 2 cut(s) 131, 424
NlaIV GGNNCC 3 cut(s) 536, 646, 690
NmuCI GTSAC 1 cut(s) 581
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 313
PinAI ACCGGT 1 cut(s) 537
PkrI GCNGC 2 cut(s) 370, 426
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 3 cut(s) 536, 646, 690
PstNI CAGNNNCTG 1 cut(s) 313
RsaI GTAC 3 cut(s) 312, 334, 690
RsaNI GTAC 3 cut(s) 311, 333, 689
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 5 cut(s) 288, 519, 543, 549, 657
SatI GCNGC 2 cut(s) 369, 425
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 66, 742
SexAI ACCWGGT 1 cut(s) 306
SfaNI GCATC 1 cut(s) 738
SmiMI CAYNNNNRTG 1 cut(s) 666
Sse9I AATT 6 cut(s) 73, 172, 285, 529, 699, 725
SsiI CCGC 2 cut(s) 369, 425
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 58, 723
TasI AATT 6 cut(s) 73, 172, 285, 529, 699, 725
TauI GCSGC 2 cut(s) 371, 427
Tru1I TTAA 5 cut(s) 288, 519, 543, 549, 657
Tru9I TTAA 5 cut(s) 288, 519, 543, 549, 657
TscAI CASTG 2 cut(s) 353, 570
TseFI GTSAC 1 cut(s) 581
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 1 cut(s) 684
TspRI CASTG 2 cut(s) 353, 570
Van91I CCANNNNNTGG 1 cut(s) 313
XapI RAATTY 1 cut(s) 725
XceI RCATGY 1 cut(s) 424
XspI CTAG 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.