Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001719.1

Orthogroup ID

OG0012058

Physical Location & Seq

Genomic Coordinates Forward (+)

81720 .. 96631

Gene Structure 14912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001719.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3336 bp

atgccaaaatccttatcagacgacagaagaaaactattgtctgatttggattgtcaccgttgtagaccgagccgttgtctattgaaaattcagacaacgatggaacacagttgtctgataaacacacaagcaacaggacctctctctaatcaatcaatcccagcgattacaaagcctccccggagcaaaccttcaacctcgttgaaacccggtgcccgcccgccagtcttagtctcctcgcgagcctactgtcagcatcaccagatcaacccggcgaccgtgcttccagtcctagtctcctcgcgagccgactgccagtactactgccacacagatactaccagcgaagcaaggcgcttgaagaagaagtcaggtcaagggactaccccgacgactgcaccccgcggtgctggcacgcctacgcaatcacacgctcaaaagagactagctcgcaaagttgccgtttccaccggctttattacgacaacaactgtagccctcttttctcccaatatctttccctccaggcactgcagtgtaaaacaagcttggagcacacattttagcactagaagtacatcagcatctgtacagtctgaaacggatgaactagtggaggataaggccaaggatctgccttcgagtggggattctatacgccgtcgatttcttgatttttatgctaaacgtggtcataagattcttccaagtgcctctcttgtgccagatgatcccacagttctactcacgattgcaggaatgcttcaatttaagcctatattccttggtcaggttccaaaacaagtaccttgtgctacaactgctcaaaggtgcatacgtacaaatgatgtggagaatgtaggtcgaacatcccgacaccacacattctttgagatgcttggaaacttcagttttggagattacttcaagaaggaagcaatccagtgggcatgggagctttcaactgtagagtttggattaccagcggacaaattatggattagtgtgtttgaagatgacaatgaagcttttgaactttggcatgatgaggtgggtgttcctgctgagcgaataaagagaatgggtgcagatgacaacttttggaccagtggagcaactggtccttgtggtccatgctcggagatttattatgatttccatcctgagaggggatattcagacattgatctcaatgatgataccaggtttatagagttttacaatttggtttttatggaattcaacaaaaaggatgatggttcgcttgaacccttaaagcagaagaatatagatactgggcttggcctggagcgtatggctcgaatccttcagaaggttccaaacaactatgaaactgacctgatttatccaattatagagaagacctcagaattggcaaatgtatcatatagcctagctgatgatcgttcaaaattgaacctcaaaattataggagatcatttgcgtgcaattgtctatctcatatcagatggtgttgttccctcaaatattgggagaggttatgtagttcgacggctaatcagaagggctgttcgtactggcaggatgcttggtataaagggggatggtcaggggaaccttgaaggagcatttttacctgtcattgcaagaaaagtaatagagttgagcacccatattaatccggatgtaaggggtagagcagcccgtgtttttgaagagttgaaaagggaagaactaaaatttgtacagacactggagagaggagaaaagtatctggatcaaatgctagttgaggcactattaactgccaaagaaagtggaactataccgtgcttgactggcaaagatgcatttcttttgtatgatacatatggatttcctgtcgaaataacaacagaagtggctgaagaacgcggtgttagtatcgatatgcatggttttgatattgaaatggaaaaccaaaggcgtcaatctcaggctgcacatagtgctgttaaacttgccatgggaaatagttcagatcttacaaagaatgtttcagacactgaatttcttggatatgataccctttctgcaagagcagtagtggaaagtcttatagtggatgggaatccagtcatacaggtttctgaaggaaatgatgtagaagtattgttgaacagaactccattttatgcagaatcaggtggtcagattggagatcatggatttttatatatcccaggtgaaaaccaacataaggttgtgatggaaataatagatgtacaaaaatcattgggtaacatatttgttcacaagggtacaatcagagagggagttctagaagttggcagagaagttgaagcagcagtggatgcaagactcaggcagcgagctaaggtgcatcatactgctactcatttgctgcaatctgcacttaagaaagttataggtcaggaaacttcacaagctggttcactggtggcttttgaccgtctaagatttgatttcaacttccaccggccaatcactgacagtgagcttgaagaaattgaaaaattggttaatatgtggattggggatgcaacactgcttcaaacaaaagtgatgcctcttgctgatgcaaaaggggcaggggctatagcaatgtttggagaaaaatatggtgaagaggtacgtgtcgtagaggttcctggtgtatccatggaactctgtggtgggactcatgtgagcaatacttctgagatacgtggtttcaaaataatttcagagcaaggtatcgcatctggagtcaggcgaatagaagctgtggctggtgacgcttttattgaatatgtcaattccagagattattatatgaaacagctgtgttccaccctcaaagtgaaagctgacgaagtaacaaacagggtagacaatctcttagaggagttacgaatgacaaggaatgaagtttctagtttgcgtgaaaaggctgctgtttacaaagcatcacagttggcagccaaggcggtttctgtgggaacttcaaatatcagggtactagttgaatctatggatgatactgatgctgattcactaaaaaaagcagctgaatatctaatagatacgctacaagatccggcagctgtaattctgggctcttgtcctggtgatgagaaggtaagtttggttgcagcattcactccaggggttgtgaagttgggaatacaggcagggaagtttatagggcctatagctaagctgtgtggtgggggagggggtggaagacccaattttgctcaggccggtgggaggaagcctgagaatttgtcagatgcacttgaaaaagctcgatcagatatcttcttacgtctctctgaaaaggcaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000049 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0031406 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DHHA1 tRNA-synt_2c tRNA_SAD

Protein Analysis

1111

Amino Acids

122.57

Weight (kDa)

6.53

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22800 AT5G22800
fragaria_vesca	FvH4_2g16070
malus_domestica	MD10G1133000.v1.1 MD10G1133100.v1.1
prunus_persica	Prupe.8G174300_v2.0.a1 Prupe.8G174300_v2.0.a1 Prupe.8G174300_v2.0.a1
pyrus_communis	pycom10g11480
rosa_chinensis	RchiOBHm_Chr6g0279751
rosa_laevigata	RLG00000013124
rosa_multiflora	Rmu_sc0001719.1_g000016
rosa_roxburghii	Rroxscaffold_7G00188700
rosa_rugosa	Rorug06G0127500
rosa_samantha	Rh6AG235900 Rh6BG240100 Rh6CG242200 Rh6DG233800
rosa_wichuraiana	Rw6G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccI	GTMKAC	2 cut(s)	64, 2874
AccII	CGCG	4 cut(s)	241, 304, 405, 1896
AccIII	TCCGGA	1 cut(s)	1663
AciI	CCGC	7 cut(s)	217, 221, 403, 405, 986, 1896, 2972
AclWI	GGATC	4 cut(s)	639, 725, 1767, 3074
AcoI	YGGCCR	1 cut(s)	2483
AcsI	RAATTY	5 cut(s)	87, 1238, 1721, 2030, 3268
AcuI	CTGAAG	4 cut(s)	892, 1313, 1908, 2133
AcyI	GRCGYC	1 cut(s)	1948
AdeI	CACNNNGTG	1 cut(s)	1970
AfiI	CCNNNNNNNGG	6 cut(s)	644, 790, 1169, 1333, 2221, 3255
AflII	CTTAAG	1 cut(s)	2399
AflIII	ACRYGT	1 cut(s)	2638
AhlI	ACTAGT	2 cut(s)	610, 3004
AjnI	CCWGG	7 cut(s)	524, 1202, 1305, 2203, 2653, 3109, 3148
AjuI	GAANNNNNNNTTGG	2 cut(s)	3113, 3145
AleI	CACNNNNGTG	1 cut(s)	534
Alw21I	GWGCWC	2 cut(s)	557, 1652
Alw26I	GTCTC	4 cut(s)	238, 301, 436, 3320
AlwI	GGATC	4 cut(s)	639, 725, 1767, 3074
AlwNI	CAGNNNCTG	4 cut(s)	531, 587, 1735, 2027
Aor13HI	TCCGGA	1 cut(s)	1663
AoxI	GGCC	5 cut(s)	624, 1303, 2483, 3191, 3246
ApoI	RAATTY	5 cut(s)	87, 1238, 1721, 2030, 3268
AseI	ATTAAT	1 cut(s)	1659
Asp700I	GAANNNNTTC	1 cut(s)	1996
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	5 cut(s)	137, 1104, 1121, 1130, 3191
AsuC2I	CCSGG	3 cut(s)	181, 210, 272
AsuHPI	GGTGA	6 cut(s)	47, 251, 2219, 2639, 2789, 3125
AvaII	GGWCC	4 cut(s)	137, 1104, 1121, 1130
BaeGI	GKGCMC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	3104
BbsI	GAAGAC	2 cut(s)	1388, 3235
Bbv12I	GWGCWC	2 cut(s)	557, 1652
BccI	CCATC	7 cut(s)	94, 1167, 1250, 1484, 1580, 2081, 2224
BceAI	ACGGC	4 cut(s)	57, 446, 645, 1550
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	7 cut(s)	526, 1204, 1307, 2205, 2655, 3111, 3150
BciVI	GTATCC	1 cut(s)	2671
BcnI	CCSGG	3 cut(s)	181, 210, 272
BcoDI	GTCTC	4 cut(s)	238, 301, 436, 3320
BcuI	ACTAGT	2 cut(s)	610, 3004
BfaI	CTAG	9 cut(s)	293, 446, 570, 611, 1415, 1769, 2303, 2919, 3005
BfmI	CTRYAG	5 cut(s)	492, 532, 966, 2601, 3195
BfoI	RGCGCY	1 cut(s)	358
BfrI	CTTAAG	1 cut(s)	2399
BfuI	GTATCC	1 cut(s)	2671
BglII	AGATCT	1 cut(s)	2002
BlpI	GCTNAGC	2 cut(s)	1065, 3201
BmcAI	AGTACT	1 cut(s)	320
Bme18I	GGWCC	4 cut(s)	137, 1104, 1121, 1130
BmgT120I	GGNCC	5 cut(s)	137, 1104, 1121, 1130, 3191
BmiI	GGNNCC	5 cut(s)	214, 795, 1338, 1598, 2652
BmrI	ACTGGG	1 cut(s)	1305
BmuI	ACTGGG	1 cut(s)	1305
BpiI	GAAGAC	2 cut(s)	1388, 3235
BplI	GAGNNNNNCTC	4 cut(s)	433, 465, 1370, 1402
BpmI	CTGGAG	5 cut(s)	508, 1328, 1757, 2769, 3132
Bpu10I	CCTNAGC	2 cut(s)	2358, 3243
Bpu1102I	GCTNAGC	2 cut(s)	1065, 3201
BpuMI	CCSGG	3 cut(s)	181, 210, 272
Bsa29I	ATCGAT	1 cut(s)	1908
BsaAI	YACGTR	3 cut(s)	839, 2639, 2711
BsaBI	GATNNNNATC	2 cut(s)	1158, 2091
BsaHI	GRCGYC	1 cut(s)	1948
BsaJI	CCNNGG	9 cut(s)	179, 403, 627, 784, 1986, 2203, 2664, 2967, 3149
BsaWI	WCCGGW	1 cut(s)	1663
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	6 cut(s)	644, 790, 1169, 1333, 2221, 3255
Bse118I	RCCGGY	3 cut(s)	470, 2481, 3248
Bse3DI	GCAATG	2 cut(s)	1623, 2613
Bse8I	GATNNNNATC	2 cut(s)	1158, 2091
BseAI	TCCGGA	1 cut(s)	1663
BseBI	CCWGG	7 cut(s)	526, 1204, 1307, 2205, 2655, 3111, 3150
BseCI	ATCGAT	1 cut(s)	1908
BseDI	CCNNGG	9 cut(s)	179, 403, 627, 784, 1986, 2203, 2664, 2967, 3149
BseJI	GATNNNNATC	2 cut(s)	1158, 2091
BseLI	CCNNNNNNNGG	6 cut(s)	644, 790, 1169, 1333, 2221, 3255
BseMI	GCAATG	2 cut(s)	1623, 2613
BseMII	CTCAG	8 cut(s)	1056, 1155, 1401, 1970, 2359, 2694, 3255, 3257
BseRI	GAGGAG	4 cut(s)	226, 289, 1758, 2903
BseSI	GKGCMC	1 cut(s)	217
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	4 cut(s)	381, 1107, 1947, 2379
Bsh1236I	CGCG	4 cut(s)	241, 304, 405, 1896
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	5 cut(s)	626, 1305, 2485, 3193, 3248
BshNI	GGYRCC	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	1908
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	557, 1652
BsiSI	CCGG	8 cut(s)	181, 210, 272, 471, 1664, 2482, 3083, 3249
BslFI	GGGAC	2 cut(s)	394, 2695
BslI	CCNNNNNNNGG	6 cut(s)	644, 790, 1169, 1333, 2221, 3255
BsmAI	GTCTC	4 cut(s)	238, 301, 436, 3320
BsmBI	CGTCTC	1 cut(s)	3320
BsmFI	GGGAC	2 cut(s)	394, 2695
BsmI	GAATGC	2 cut(s)	765, 3140
BsnI	GGCC	5 cut(s)	626, 1305, 2485, 3193, 3248
Bsp1286I	GDGCHC	4 cut(s)	217, 557, 1652, 3104
Bsp13I	TCCGGA	1 cut(s)	1663
Bsp1407I	TGTACA	3 cut(s)	589, 1726, 2245
Bsp1720I	GCTNAGC	2 cut(s)	1065, 3201
Bsp19I	CCATGG	2 cut(s)	1986, 2664
Bsp68I	TCGCGA	2 cut(s)	241, 304
BspACI	CCGC	7 cut(s)	217, 221, 403, 405, 986, 1896, 2972
BspANI	GGCC	5 cut(s)	626, 1305, 2485, 3193, 3248
BspCNI	CTCAG	8 cut(s)	1057, 1156, 1400, 1969, 2358, 2695, 3256, 3256
BspDI	ATCGAT	1 cut(s)	1908
BspEI	TCCGGA	1 cut(s)	1663
BspFNI	CGCG	4 cut(s)	241, 304, 405, 1896
BspLI	GGNNCC	5 cut(s)	214, 795, 1338, 1598, 2652
BspMAI	CTGCAG	1 cut(s)	536
BspPI	GGATC	4 cut(s)	639, 725, 1767, 3074
BspT107I	GGYRCC	1 cut(s)	212
BspTI	CTTAAG	1 cut(s)	2399
BsrDI	GCAATG	2 cut(s)	1623, 2613
BsrFI	RCCGGY	3 cut(s)	470, 2481, 3248
BsrGI	TGTACA	3 cut(s)	589, 1726, 2245
BssAI	RCCGGY	3 cut(s)	470, 2481, 3248
BssECI	CCNNGG	9 cut(s)	179, 403, 627, 784, 1986, 2203, 2664, 2967, 3149
BssNI	GRCGYC	1 cut(s)	1948
BssT1I	CCWWGG	5 cut(s)	627, 784, 1986, 2664, 2967
Bst2UI	CCWGG	7 cut(s)	526, 1204, 1307, 2205, 2655, 3111, 3150
Bst6I	CTCTTC	2 cut(s)	1692, 2625
BstACI	GRCGYC	1 cut(s)	1948
BstAFI	CTTAAG	1 cut(s)	2399
BstAPI	GCANNNNNTGC	2 cut(s)	1970, 2336
BstAUI	TGTACA	3 cut(s)	589, 1726, 2245
BstBAI	YACGTR	3 cut(s)	839, 2639, 2711
BstDSI	CCRYGG	3 cut(s)	403, 1986, 2664
BstENI	CCTNNNNNAGG	2 cut(s)	788, 1331
BstFNI	CGCG	4 cut(s)	241, 304, 405, 1896
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstMAI	GTCTC	4 cut(s)	238, 301, 436, 3320
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	8 cut(s)	411, 821, 1821, 1970, 2336, 2591, 2780, 2969
BstNI	CCWGG	7 cut(s)	526, 1204, 1307, 2205, 2655, 3111, 3150
BstSFI	CTRYAG	5 cut(s)	492, 532, 966, 2601, 3195
BstSLI	GKGCMC	1 cut(s)	217
BstSNI	TACGTA	1 cut(s)	839
BstUI	CGCG	4 cut(s)	241, 304, 405, 1896
BstV2I	GAAGAC	2 cut(s)	1388, 3235
BstX2I	RGATCY	3 cut(s)	631, 2002, 3079
BstYI	RGATCY	3 cut(s)	631, 2002, 3079
Bsu15I	ATCGAT	1 cut(s)	1908
BsuI	GTATCC	1 cut(s)	2671
BsuRI	GGCC	5 cut(s)	626, 1305, 2485, 3193, 3248
BsuTUI	ATCGAT	1 cut(s)	1908
BtgI	CCRYGG	3 cut(s)	403, 1986, 2664
BtsI	GCAGTG	4 cut(s)	529, 541, 2337, 2549
BtuMI	TCGCGA	2 cut(s)	241, 304
CaiI	CAGNNNCTG	4 cut(s)	531, 587, 1735, 2027
CfoI	GCGC	1 cut(s)	357
Cfr10I	RCCGGY	3 cut(s)	470, 2481, 3248
Cfr13I	GGNCC	5 cut(s)	137, 1104, 1121, 1130, 3191
Cfr42I	CCGCGG	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	1908
CseI	GACGC	2 cut(s)	1937, 2789
CsiI	ACCWGGT	1 cut(s)	1202
CspCI	CAANNNNNGTGG	6 cut(s)	831, 866, 1780, 1815, 1863, 1898
CviAII	CATG	8 cut(s)	951, 1043, 1134, 1916, 1987, 2186, 2665, 2687
DraIII	CACNNNGTG	1 cut(s)	1970
EaeI	YGGCCR	1 cut(s)	2483
Eam1104I	CTCTTC	2 cut(s)	1692, 2625
EarI	CTCTTC	2 cut(s)	1692, 2625
Eco105I	TACGTA	1 cut(s)	839
Eco130I	CCWWGG	5 cut(s)	627, 784, 1986, 2664, 2967
Eco24I	GRGCYC	1 cut(s)	3104
Eco32I	GATATC	1 cut(s)	3304
Eco47I	GGWCC	4 cut(s)	137, 1104, 1121, 1130
Eco57I	CTGAAG	4 cut(s)	892, 1313, 1908, 2133
EcoNI	CCTNNNNNAGG	2 cut(s)	788, 1331
EcoO109I	RGGNCCY	2 cut(s)	137, 3191
EcoRI	GAATTC	1 cut(s)	1238
EcoRII	CCWGG	7 cut(s)	524, 1202, 1305, 2203, 2653, 3109, 3148
EcoRV	GATATC	1 cut(s)	3304
EcoT14I	CCWWGG	5 cut(s)	627, 784, 1986, 2664, 2967
EcoT22I	ATGCAT	2 cut(s)	1834, 1917
EcoT38I	GRGCYC	1 cut(s)	3104
ErhI	CCWWGG	5 cut(s)	627, 784, 1986, 2664, 2967
Esp3I	CGTCTC	1 cut(s)	3320
FaeI	CATG	8 cut(s)	954, 1046, 1137, 1919, 1990, 2189, 2668, 2690
FaqI	GGGAC	2 cut(s)	394, 2695
FatI	CATG	8 cut(s)	950, 1042, 1133, 1915, 1986, 2185, 2664, 2686
FauI	CCCGC	3 cut(s)	224, 228, 410
FauNDI	CATATG	1 cut(s)	1852
FblI	GTMKAC	2 cut(s)	64, 2874
FriOI	GRGCYC	1 cut(s)	3104
FspBI	CTAG	9 cut(s)	293, 446, 570, 611, 1415, 1769, 2303, 2919, 3005
GlaI	GCGC	1 cut(s)	356
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	5 cut(s)	508, 1328, 1757, 2769, 3132
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	5 cut(s)	626, 1305, 2485, 3193, 3248
HapII	CCGG	8 cut(s)	181, 210, 272, 471, 1664, 2482, 3083, 3249
HgaI	GACGC	2 cut(s)	1937, 2789
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	1948
Hin1II	CATG	8 cut(s)	954, 1046, 1137, 1919, 1990, 2189, 2668, 2690
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HindIII	AAGCTT	2 cut(s)	546, 1026
HpaII	CCGG	8 cut(s)	181, 210, 272, 471, 1664, 2482, 3083, 3249
HphI	GGTGA	6 cut(s)	47, 251, 2219, 2639, 2789, 3125
Hpy166II	GTNNAC	5 cut(s)	65, 2275, 2438, 2875, 2944
Hpy8I	GTNNAC	5 cut(s)	65, 2275, 2438, 2875, 2944
Hpy99I	CGWCG	3 cut(s)	394, 666, 1536
HpyAV	CCTTC	9 cut(s)	201, 648, 925, 1327, 1337, 1539, 1598, 2108, 3115
HpyCH4IV	ACGT	5 cut(s)	688, 838, 2638, 2710, 3313
HpyF10VI	GCNNNNNNNGC	8 cut(s)	411, 821, 1821, 1970, 2336, 2591, 2780, 2969
HpySE526I	ACGT	5 cut(s)	688, 838, 2638, 2710, 3313
Hsp92I	GRCGYC	1 cut(s)	1948
Hsp92II	CATG	8 cut(s)	954, 1046, 1137, 1919, 1990, 2189, 2668, 2690
HspAI	GCGC	1 cut(s)	355
Kpn2I	TCCGGA	1 cut(s)	1663
KspI	CCGCGG	1 cut(s)	406
LmnI	GCTCC	6 cut(s)	183, 552, 955, 1112, 1309, 1607
MabI	ACCWGGT	1 cut(s)	1202
MaeI	CTAG	9 cut(s)	293, 446, 570, 611, 1415, 1769, 2303, 2919, 3005
MaeII	ACGT	5 cut(s)	688, 838, 2638, 2710, 3313
MaeIII	GTNAC	5 cut(s)	53, 2261, 2777, 2860, 2892
MfeI	CAATTG	1 cut(s)	1470
MflI	RGATCY	3 cut(s)	631, 2002, 3079
MhlI	GDGCHC	4 cut(s)	217, 557, 1652, 3104
MlyI	GAGTC	3 cut(s)	2337, 2677, 2760
Mph1103I	ATGCAT	2 cut(s)	1834, 1917
MroI	TCCGGA	1 cut(s)	1663
MroXI	GAANNNNTTC	1 cut(s)	1996
MseI	TTAA	7 cut(s)	771, 1274, 1659, 1784, 1977, 2400, 2526
MslI	CAYNNNNRTG	2 cut(s)	534, 1464
MspA1I	CMGCKG	5 cut(s)	405, 986, 2827, 3053, 3089
MspCI	CTTAAG	1 cut(s)	2399
MspI	CCGG	8 cut(s)	181, 210, 272, 471, 1664, 2482, 3083, 3249
MunI	CAATTG	1 cut(s)	1470
Mva1269I	GAATGC	2 cut(s)	765, 3140
MvaI	CCWGG	7 cut(s)	526, 1204, 1307, 2205, 2655, 3111, 3150
MvnI	CGCG	4 cut(s)	241, 304, 405, 1896
MwoI	GCNNNNNNNGC	8 cut(s)	411, 821, 1821, 1970, 2336, 2591, 2780, 2969
NciI	CCSGG	3 cut(s)	181, 210, 272
NcoI	CCATGG	2 cut(s)	1986, 2664
NdeI	CATATG	1 cut(s)	1852
NlaIII	CATG	8 cut(s)	954, 1046, 1137, 1919, 1990, 2189, 2668, 2690
NlaIV	GGNNCC	5 cut(s)	214, 795, 1338, 1598, 2652
NmuCI	GTSAC	2 cut(s)	53, 2777
NruI	TCGCGA	2 cut(s)	241, 304
NsiI	ATGCAT	2 cut(s)	1834, 1917
OliI	CACNNNNGTG	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	871
PctI	GAATGC	2 cut(s)	765, 3140
PdmI	GAANNNNTTC	1 cut(s)	1996
PfeI	GAWTC	7 cut(s)	650, 700, 1323, 2092, 2162, 3011, 3035
PleI	GAGTC	3 cut(s)	2337, 2677, 2759
PpsI	GAGTC	3 cut(s)	2337, 2677, 2759
Ppu21I	YACGTR	3 cut(s)	839, 2639, 2711
PpuMI	RGGWCCY	1 cut(s)	137
PshBI	ATTAAT	1 cut(s)	1659
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	7 cut(s)	524, 1202, 1305, 2203, 2653, 3109, 3148
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	7 cut(s)	524, 1202, 1305, 2203, 2653, 3109, 3148
PspN4I	GGNNCC	5 cut(s)	214, 795, 1338, 1598, 2652
PspPI	GGNCC	5 cut(s)	137, 1104, 1121, 1130, 3191
PspPPI	RGGWCCY	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	536
PstNI	CAGNNNCTG	4 cut(s)	531, 587, 1735, 2027
PsuI	RGATCY	3 cut(s)	631, 2002, 3079
PvuII	CAGCTG	3 cut(s)	2827, 3053, 3089
RruI	TCGCGA	2 cut(s)	241, 304
RseI	CAYNNNNRTG	2 cut(s)	534, 1464
SacII	CCGCGG	1 cut(s)	406
SaqAI	TTAA	7 cut(s)	771, 1274, 1659, 1784, 1977, 2400, 2526
Sau96I	GGNCC	5 cut(s)	137, 1104, 1121, 1130, 3191
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	3 cut(s)	2337, 2677, 2760
SduI	GDGCHC	4 cut(s)	217, 557, 1652, 3104
SexAI	ACCWGGT	1 cut(s)	1202
SfcI	CTRYAG	5 cut(s)	492, 532, 966, 2601, 3195
Sfr303I	CCGCGG	1 cut(s)	406
SgrBI	CCGCGG	1 cut(s)	406
SinI	GGWCC	4 cut(s)	137, 1104, 1121, 1130
SmiMI	CAYNNNNRTG	2 cut(s)	534, 1464
SmlI	CTYRAG	1 cut(s)	2399
SmoI	CTYRAG	1 cut(s)	2399
SnaBI	TACGTA	1 cut(s)	839
SpeI	ACTAGT	2 cut(s)	610, 3004
SsiI	CCGC	7 cut(s)	217, 221, 403, 405, 986, 1896, 2972
SspI	AATATT	1 cut(s)	1510
SspMI	CTAG	9 cut(s)	293, 446, 570, 611, 1415, 1769, 2303, 2919, 3005
StyI	CCWWGG	5 cut(s)	627, 784, 1986, 2664, 2967
TaiI	ACGT	5 cut(s)	691, 841, 2641, 2713, 3316
TaqI	TCGA	8 cut(s)	641, 664, 865, 1321, 1531, 1866, 1908, 3295
TaqII	GACCGA	1 cut(s)	82
TatI	WGTACW	5 cut(s)	318, 575, 589, 1726, 2245
TfiI	GAWTC	7 cut(s)	650, 700, 1323, 2092, 2162, 3011, 3035
Tru1I	TTAA	7 cut(s)	771, 1274, 1659, 1784, 1977, 2400, 2526
Tru9I	TTAA	7 cut(s)	771, 1274, 1659, 1784, 1977, 2400, 2526
TseFI	GTSAC	2 cut(s)	53, 2777
Tsp45I	GTSAC	2 cut(s)	53, 2777
TspDTI	ATGAA	5 cut(s)	621, 1038, 1365, 2834, 2925
TspGWI	ACGGA	1 cut(s)	617
Vha464I	CTTAAG	1 cut(s)	2399
VpaK11BI	GGWCC	4 cut(s)	137, 1104, 1121, 1130
VspI	ATTAAT	1 cut(s)	1659
XagI	CCTNNNNNAGG	2 cut(s)	788, 1331
XapI	RAATTY	5 cut(s)	87, 1238, 1721, 2030, 3268
XbaI	TCTAGA	1 cut(s)	2302
XmiI	GTMKAC	2 cut(s)	64, 2874
XmnI	GAANNNNTTC	1 cut(s)	1996
XspI	CTAG	9 cut(s)	293, 446, 570, 611, 1415, 1769, 2303, 2919, 3005
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	2 cut(s)	1834, 1917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.