Rmu_sc0001758.1_g000009

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001758.1
OG0019807
Physical Location & Seq
Forward (+)
37903 .. 38828
926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001758.1_g000009.1.cds

Sequence Viewer

Length: 789 bp
atgattgactacttgttcacattgcataggcttgatctctacagaagcaagttttctggcattcctgtatgcgtcagcaacctcgtgaatttgacaaaactcgacttacatggttgtatacagcttaaagaaattccagaacttccgtcaagcgtaaaatgggttgatgtcgctggttgcaggtcattgaccagatttcgacaattgtatgatatacccggtggaattgagtggttcaacttgtgtgaatctggactatggaatgataatgataaacaagattgtatggaatcaggaagtgaagttcccaagtggttcggttacactgtgattccagatcatttccctacccttccattttaccgcccctctgaatacccagttcccatatgtgagcatgcaattgaaattcctgcacaattcaaatgggagaacaccggagtggctttctgtattgtcttgaactttagagaccactgcagccaggattggtacagtgattgcaattgctatttccgagctgtagttcacatcaatgacgtacacatcggtgattatcagtcccccttctatcctcaaaggacgcgtcaggaacatatatggctgcaatatgatccattgccagttgagatgaaggccaaggtagatggagagactggattgctgcgtttgggtactcattacaactgtcgagttgagttttacttctggctgggtacagctgaaagaaagtcatgcataaagctacacatttttgaaatgcggagcactcatggtgggtggggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

262

Amino Acids

30.63

Weight (kDa)

5.86

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019807)

Species Orthologous Gene IDs
prunus_persica Prupe.1G018600_v2.0.a1
rosa_laevigata RLG00000004790
rosa_multiflora Rmu_sc0001758.1_g000009 Rmu_sc0029164.1_g000001 Rmu_sc0029165.1_g000001
rosa_roxburghii Rroxscaffold_3G00267550
rosa_samantha Rh7CG086500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 118
AccII CGCG 1 cut(s) 586
AciI CCGC 2 cut(s) 364, 763
AclWI GGATC 1 cut(s) 608
AcsI RAATTY 3 cut(s) 88, 132, 408
AfaI GTAC 4 cut(s) 494, 543, 676, 718
AflIII ACRYGT 1 cut(s) 584
AgsI TTSAA 5 cut(s) 238, 407, 424, 463, 758
AjnI CCWGG 1 cut(s) 483
AleI CACNNNNGTG 2 cut(s) 440, 549
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 4 cut(s) 124, 521, 722, 745
AluI AGCT 4 cut(s) 124, 521, 722, 745
Alw21I GWGCWC 1 cut(s) 770
Alw26I GTCTC 2 cut(s) 465, 647
AlwI GGATC 1 cut(s) 608
AoxI GGCC 1 cut(s) 636
ApeKI GCWGC 3 cut(s) 480, 604, 664
ApoI RAATTY 3 cut(s) 88, 132, 408
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 563
BauI CACGAG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 770
BbvI GCAGC 3 cut(s) 492, 591, 651
BccI CCATC 1 cut(s) 641
BciT130I CCWGG 1 cut(s) 485
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 465, 647
BfmI CTRYAG 3 cut(s) 40, 478, 522
BfuAI ACCTGC 1 cut(s) 171
BisI GCNGC 3 cut(s) 481, 605, 665
BlsI GCNGC 3 cut(s) 482, 606, 666
Bme1390I CCNGG 2 cut(s) 219, 485
BmrFI CCNGG 2 cut(s) 219, 485
BmrI ACTGGG 1 cut(s) 374
BmuI ACTGGG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 639
BsaWI WCCGGW 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 380, 623, 661
Bse3DI GCAATG 2 cut(s) 20, 617
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 639
BseMI GCAATG 2 cut(s) 20, 617
BseNI ACTGG 3 cut(s) 380, 623, 661
BseXI GCAGC 3 cut(s) 492, 591, 651
BseYI CCCAGC 1 cut(s) 712
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 586
BshFI GGCC 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 770
BsiSI CCGG 2 cut(s) 219, 438
BslFI GGGAC 1 cut(s) 547
BsmAI GTCTC 2 cut(s) 465, 647
BsmFI GGGAC 1 cut(s) 547
BsmI GAATGC 1 cut(s) 60
BsnI GGCC 1 cut(s) 638
Bso31I GGTCTC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 770
Bsp143I GATC 3 cut(s) 34, 337, 613
BspACI CCGC 2 cut(s) 364, 763
BspANI GGCC 1 cut(s) 638
BspFNI CGCG 1 cut(s) 586
BspMAI CTGCAG 1 cut(s) 482
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 465
BsrDI GCAATG 2 cut(s) 20, 617
BsrI ACTGG 3 cut(s) 380, 623, 661
BssECI CCNNGG 1 cut(s) 639
BssMI GATC 3 cut(s) 34, 337, 613
BssNAI GTATAC 1 cut(s) 119
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 639
Bst1107I GTATAC 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 3 cut(s) 328, 497, 689
BstC8I GCNNGC 1 cut(s) 399
BstFNI CGCG 1 cut(s) 586
BstKTI GATC 3 cut(s) 37, 340, 616
BstMAI GTCTC 2 cut(s) 465, 647
BstMBI GATC 3 cut(s) 34, 337, 613
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 217, 483
BstSFI CTRYAG 3 cut(s) 40, 478, 522
BstUI CGCG 1 cut(s) 586
BstV1I GCAGC 3 cut(s) 492, 591, 651
BstZ17I GTATAC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 638
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 3 cut(s) 324, 475, 502
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 399
CseI GACGC 3 cut(s) 61, 575, 592
Csp6I GTAC 4 cut(s) 493, 542, 675, 717
CviAII CATG 4 cut(s) 110, 398, 735, 773
CviQI GTAC 4 cut(s) 493, 542, 675, 717
DpnI GATC 3 cut(s) 36, 339, 615
DpnII GATC 3 cut(s) 34, 337, 613
Eco130I CCWWGG 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 639
EcoT22I ATGCAT 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 4 cut(s) 113, 401, 738, 776
FaqI GGGAC 1 cut(s) 547
FatI CATG 4 cut(s) 109, 397, 734, 772
FauNDI CATATG 1 cut(s) 389
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 481, 605, 665
Fsp4HI GCNGC 3 cut(s) 481, 605, 665
GluI GCNGC 3 cut(s) 481, 605, 665
GsaI CCCAGC 1 cut(s) 716
HaeIII GGCC 1 cut(s) 638
HapII CCGG 2 cut(s) 219, 438
HgaI GACGC 3 cut(s) 61, 575, 592
Hin1II CATG 4 cut(s) 113, 401, 738, 776
HinfI GANTC 3 cut(s) 248, 290, 331
HpaII CCGG 2 cut(s) 219, 438
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 4 cut(s) 18, 119, 529, 544
Hpy188I TCNGA 2 cut(s) 373, 518
Hpy188III TCNNGA 7 cut(s) 85, 137, 252, 294, 335, 460, 590
Hpy8I GTNNAC 4 cut(s) 18, 119, 529, 544
HpyAV CCTTC 3 cut(s) 362, 577, 628
HpyCH4III ACNGT 3 cut(s) 328, 497, 689
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 8 cut(s) 25, 180, 401, 416, 480, 504, 607, 738
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 4 cut(s) 113, 401, 738, 776
Kzo9I GATC 3 cut(s) 34, 337, 613
LmnI GCTCC 1 cut(s) 765
Lsp1109I GCAGC 3 cut(s) 492, 591, 651
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 1 cut(s) 320
MalI GATC 3 cut(s) 36, 339, 615
MboI GATC 3 cut(s) 34, 337, 613
MfeI CAATTG 3 cut(s) 203, 402, 505
MhlI GDGCHC 1 cut(s) 770
MluCI AATT 8 cut(s) 88, 132, 203, 225, 402, 408, 419, 505
MluI ACGCGT 1 cut(s) 584
MnlI CCTC 3 cut(s) 92, 379, 585
Mph1103I ATGCAT 1 cut(s) 740
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 3 cut(s) 440, 534, 549
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 2 cut(s) 219, 438
MspR9I CCNGG 2 cut(s) 219, 485
MunI CAATTG 3 cut(s) 203, 402, 505
Mva1269I GAATGC 1 cut(s) 60
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 1 cut(s) 586
NciI CCSGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 389
NdeII GATC 3 cut(s) 34, 337, 613
NlaIII CATG 4 cut(s) 113, 401, 738, 776
NsiI ATGCAT 1 cut(s) 740
NspI RCATGY 1 cut(s) 401
OliI CACNNNNGTG 2 cut(s) 440, 549
PaeI GCATGC 1 cut(s) 401
PctI GAATGC 1 cut(s) 60
PfeI GAWTC 3 cut(s) 248, 290, 331
PkrI GCNGC 3 cut(s) 482, 606, 666
Psp6I CCWGG 1 cut(s) 483
PspFI CCCAGC 1 cut(s) 712
PspGI CCWGG 1 cut(s) 483
PstI CTGCAG 1 cut(s) 482
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 4 cut(s) 494, 543, 676, 718
RsaNI GTAC 4 cut(s) 493, 542, 675, 717
RseI CAYNNNNRTG 3 cut(s) 440, 534, 549
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 3 cut(s) 481, 605, 665
Sau3AI GATC 3 cut(s) 34, 337, 613
ScrFI CCNGG 2 cut(s) 219, 485
SduI GDGCHC 1 cut(s) 770
SetI ASST 8 cut(s) 84, 126, 185, 523, 543, 645, 724, 747
SfcI CTRYAG 3 cut(s) 40, 478, 522
SmiMI CAYNNNNRTG 3 cut(s) 440, 534, 549
SphI GCATGC 1 cut(s) 401
Sse9I AATT 8 cut(s) 88, 132, 203, 225, 402, 408, 419, 505
SsiI CCGC 2 cut(s) 364, 763
StyD4I CCNGG 2 cut(s) 217, 483
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 3 cut(s) 328, 497, 689
TaiI ACGT 1 cut(s) 543
TaqI TCGA 3 cut(s) 102, 199, 691
TasI AATT 8 cut(s) 88, 132, 203, 225, 402, 408, 419, 505
TfiI GAWTC 3 cut(s) 248, 290, 331
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 3 cut(s) 331, 482, 502
TseI GCWGC 3 cut(s) 480, 604, 664
TspDTI ATGAA 1 cut(s) 647
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 3 cut(s) 331, 482, 502
XapI RAATTY 3 cut(s) 88, 132, 408
XceI RCATGY 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 118
Zsp2I ATGCAT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.