Rh7CG086500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019807
Physical Location & Seq
Reverse (-)
6511052 .. 6511489
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG086500.1

Sequence Viewer

Length: 438 bp
ATGACGTACACATCGGTGATTATCAGTCCCCCTTCTATCCTCGAAGGACGCGACAGGAACATATATATATGGCTGCAATATGATCCATTGCCAGTTGAGTTGAAGGCCAAGGTAGATGGAGGGACTGGATTGCTGCGTTTGGGTACTCATTACAACTGTCGAGTTGAGTTTTACTTCTGGCTGGGTACAGCTGAAAGAAAGTCATGCATAAAGCTACACATTTTGAAATGCGGAGCACTCATAGTAGGTGGGGATGAGATTCCTGGTATTGATTTTTGGAGGGAACGGATCCGGAACGGTGGCTTCCCATTCCAATCCAAAGTCTTGCAGAATCAAATATCAACTGGGACACTACGGAAATTAATCCGAATCGGGATGTCACTGATTTTCTGCATTATCCGATTCGCAATGTCACATATCAATTCAGCATGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.45

Weight (kDa)

9.4

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019807)

Species Orthologous Gene IDs
prunus_persica Prupe.1G018600_v2.0.a1
rosa_laevigata RLG00000004790
rosa_multiflora Rmu_sc0001758.1_g000009 Rmu_sc0029164.1_g000001 Rmu_sc0029165.1_g000001
rosa_roxburghii Rroxscaffold_3G00267550
rosa_samantha Rh7CG086500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AccIII TCCGGA 1 cut(s) 291
AciI CCGC 1 cut(s) 231
AclWI GGATC 3 cut(s) 77, 283, 296
AfaI GTAC 3 cut(s) 8, 145, 187
AgsI TTSAA 2 cut(s) 103, 226
AjnI CCWGG 1 cut(s) 262
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 191, 214
AluI AGCT 2 cut(s) 191, 214
Alw21I GWGCWC 1 cut(s) 238
AlwI GGATC 3 cut(s) 77, 283, 296
Aor13HI TCCGGA 1 cut(s) 291
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 73, 133
AseI ATTAAT 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 28
BamHI GGATCC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 60, 120
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 264
BisI GCNGC 2 cut(s) 74, 134
BlsI GCNGC 2 cut(s) 75, 135
Bme1390I CCNGG 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 291
Bse1I ACTGG 3 cut(s) 92, 130, 349
Bse3DI GCAATG 2 cut(s) 86, 414
BseAI TCCGGA 1 cut(s) 291
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 259, 381
BseMI GCAATG 2 cut(s) 86, 414
BseNI ACTGG 3 cut(s) 92, 130, 349
BseXI GCAGC 2 cut(s) 60, 120
BseYI CCCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 3 cut(s) 12, 136, 361
BsmFI GGGAC 3 cut(s) 12, 136, 361
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 238
Bsp13I TCCGGA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 82, 288
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 107
BspEI TCCGGA 1 cut(s) 291
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 290
BspPI GGATC 3 cut(s) 77, 283, 296
BsrDI GCAATG 2 cut(s) 86, 414
BsrI ACTGG 3 cut(s) 92, 130, 349
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 82, 288
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 158, 299
BstF5I GGATG 2 cut(s) 259, 381
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 2 cut(s) 85, 291
BstMBI GATC 2 cut(s) 82, 288
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 262
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 60, 120
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 259, 381
BtsIMutI CAGTG 1 cut(s) 380
CseI GACGC 1 cut(s) 57
Csp6I GTAC 3 cut(s) 7, 144, 186
CviAII CATG 2 cut(s) 204, 429
CviJI RGCY 6 cut(s) 73, 107, 181, 191, 214, 303
CviKI_1 RGCY 6 cut(s) 73, 107, 181, 191, 214, 303
CviQI GTAC 3 cut(s) 7, 144, 186
DpnI GATC 2 cut(s) 84, 290
DpnII GATC 2 cut(s) 82, 288
Eco130I CCWWGG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 207, 432
FaqI GGGAC 3 cut(s) 12, 136, 361
FatI CATG 2 cut(s) 203, 428
Fnu4HI GCNGC 2 cut(s) 74, 134
FokI GGATG 2 cut(s) 266, 388
Fsp4HI GCNGC 2 cut(s) 74, 134
GluI GCNGC 2 cut(s) 74, 134
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 292
HgaI GACGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 207, 432
HinfI GANTC 4 cut(s) 259, 331, 369, 402
HpaII CCGG 1 cut(s) 292
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 368, 401
Hpy188III TCNNGA 2 cut(s) 292, 373
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 3 cut(s) 38, 42, 97
HpyCH4III ACNGT 2 cut(s) 158, 299
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 4 cut(s) 76, 207, 328, 393
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 2 cut(s) 207, 432
Kpn2I TCCGGA 1 cut(s) 291
Kzo9I GATC 2 cut(s) 82, 288
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 9 cut(s) 40, 105, 111, 163, 167, 249, 276, 305, 330
Lsp1109I GCAGC 2 cut(s) 60, 120
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 378, 411
MalI GATC 2 cut(s) 84, 290
MboI GATC 2 cut(s) 82, 288
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 2 cut(s) 359, 421
MnlI CCTC 3 cut(s) 50, 113, 273
Mph1103I ATGCAT 1 cut(s) 209
MroI TCCGGA 1 cut(s) 291
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 1 cut(s) 51
NdeII GATC 2 cut(s) 82, 288
NlaIII CATG 2 cut(s) 207, 432
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 2 cut(s) 378, 411
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 432
OliI CACNNNNGTG 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 4 cut(s) 259, 331, 369, 402
PkrI GCNGC 2 cut(s) 75, 135
PshBI ATTAAT 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 288
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 3 cut(s) 8, 145, 187
RsaNI GTAC 3 cut(s) 7, 144, 186
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 2 cut(s) 74, 134
Sau3AI GATC 2 cut(s) 82, 288
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 238
SetI ASST 5 cut(s) 8, 114, 193, 216, 250
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 359, 421
SsiI CCGC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 158, 299
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 42, 160
TasI AATT 2 cut(s) 359, 421
TfiI GAWTC 4 cut(s) 259, 331, 369, 402
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 2 cut(s) 378, 411
TseI GCWGC 2 cut(s) 73, 133
Tsp45I GTSAC 2 cut(s) 378, 411
TspGWI ACGGA 2 cut(s) 301, 370
TspRI CASTG 1 cut(s) 387
VspI ATTAAT 1 cut(s) 362
XceI RCATGY 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.