Rmu_sc0001781.1_g000018

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001781.1
OG0017439
Physical Location & Seq
Reverse (-)
133259 .. 134566
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 591 bp
atgggaacgatagccaccatatctcagggggaggacgtctatctcatcagccaatcagccagaagaccttgttttcacaataacatgaagcacaagttcttagtctggaacaccgcaaaccaggctcataaggcaaagattaaagagttccctggtcttcaccgaggagaagatatgccctccgatcatccctctctccccaccaccgtccctaatgacgttaccaacgtcaaggcatcgatgctgccgacagggaagggtctggaggatctccgccgtctgttcgcaagaccggggccgcacgttttcctggatgccaccacccatctcatttatgggcccacacgtgcttccggcaatgcgaacttggtctcgagcttgatcgacgccggaggaaatgtgaatcgaaaagtttcaaattccgggtgtttgttgtctctagctgttcggaacagaaatattgaagctgtgaagattcttatagcgtgcggctgtaaagtcgataactcggttttgcacgacgcggcggtgatgaacagggttgatttggtggagattttgtgcaagaatttcccggaaaacgttttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4

Protein Analysis

196

Amino Acids

21.36

Weight (kDa)

9.06

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 118 - 190 1e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 39
AccII CGCG 1 cut(s) 524
AciI CCGC 6 cut(s) 114, 274, 299, 489, 524, 527
AclI AACGTT 1 cut(s) 582
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 2 cut(s) 418, 568
AcvI CACGTG 1 cut(s) 347
AcyI GRCGYC 2 cut(s) 36, 387
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 2 cut(s) 417, 464
AjnI CCWGG 3 cut(s) 120, 151, 309
AluBI AGCT 3 cut(s) 378, 443, 467
AluI AGCT 3 cut(s) 378, 443, 467
Alw26I GTCTC 2 cut(s) 376, 441
AlwI GGATC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 2 cut(s) 296, 338
ApaI GGGCCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 2 cut(s) 418, 568
Asp700I GAANNNNTTC 1 cut(s) 412
AspS9I GGNCC 3 cut(s) 296, 338, 339
AsuC2I CCSGG 3 cut(s) 294, 424, 575
AsuHPI GGTGA 2 cut(s) 152, 541
AvaI CYCGRG 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 342
BbrPI CACGTG 1 cut(s) 347
BbsI GAAGAC 2 cut(s) 70, 149
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 333
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 3 cut(s) 122, 153, 311
BcnI CCSGG 3 cut(s) 294, 424, 575
BcoDI GTCTC 2 cut(s) 376, 441
BfaI CTAG 1 cut(s) 440
BisI GCNGC 4 cut(s) 245, 299, 490, 525
BlsI GCNGC 4 cut(s) 246, 300, 491, 526
Bme1390I CCNGG 6 cut(s) 122, 153, 294, 311, 424, 575
BmeT110I CYCGRG 1 cut(s) 373
BmgT120I GGNCC 3 cut(s) 296, 338, 339
BmiI GGNNCC 2 cut(s) 297, 340
BmrFI CCNGG 6 cut(s) 122, 153, 294, 311, 424, 575
BmsI GCATC 3 cut(s) 231, 245, 304
BpiI GAAGAC 2 cut(s) 70, 149
BpmI CTGGAG 1 cut(s) 284
BpuMI CCSGG 3 cut(s) 294, 424, 575
Bsa29I ATCGAT 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 347
BsaHI GRCGYC 2 cut(s) 36, 387
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 3 cut(s) 151, 163, 293
BsaXI ACNNNNNCTCC 4 cut(s) 384, 414, 545, 575
Bse3DI GCAATG 1 cut(s) 364
BseBI CCWGG 3 cut(s) 122, 153, 311
BseCI ATCGAT 1 cut(s) 239
BseDI CCNNGG 3 cut(s) 151, 163, 293
BseGI GGATG 2 cut(s) 187, 319
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 524
BshFI GGCC 2 cut(s) 298, 340
BshVI ATCGAT 1 cut(s) 239
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 5 cut(s) 293, 354, 390, 423, 575
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 376, 441
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 298, 340
Bso31I GGTCTC 1 cut(s) 376
BsoBI CYCGRG 1 cut(s) 373
Bsp120I GGGCCC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 3 cut(s) 184, 268, 381
BspACI CCGC 6 cut(s) 114, 274, 299, 489, 524, 527
BspANI GGCC 2 cut(s) 298, 340
BspCNI CTCAG 1 cut(s) 37
BspDI ATCGAT 1 cut(s) 239
BspFNI CGCG 1 cut(s) 524
BspLI GGNNCC 2 cut(s) 297, 340
BspPI GGATC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 151, 163, 293
BssMI GATC 3 cut(s) 184, 268, 381
BssNI GRCGYC 2 cut(s) 36, 387
Bst2UI CCWGG 3 cut(s) 122, 153, 311
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 2 cut(s) 36, 387
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 2 cut(s) 24, 100
BstF5I GGATG 2 cut(s) 187, 319
BstFNI CGCG 1 cut(s) 524
BstKTI GATC 3 cut(s) 187, 271, 384
BstMAI GTCTC 2 cut(s) 376, 441
BstMBI GATC 3 cut(s) 184, 268, 381
BstMWI GCNNNNNNNGC 2 cut(s) 122, 131
BstNI CCWGG 3 cut(s) 122, 153, 311
BstSCI CCNGG 6 cut(s) 120, 151, 292, 309, 422, 573
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 1 cut(s) 524
BstV1I GCAGC 1 cut(s) 231
BstV2I GAAGAC 2 cut(s) 70, 149
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 239
BsuRI GGCC 2 cut(s) 298, 340
BsuTUI ATCGAT 1 cut(s) 239
BtsCI GGATG 2 cut(s) 187, 319
Cac8I GCNNGC 1 cut(s) 487
Cfr13I GGNCC 3 cut(s) 296, 338, 339
ClaI ATCGAT 1 cut(s) 239
CseI GACGC 2 cut(s) 395, 530
CviAII CATG 1 cut(s) 85
DdeI CTNAG 2 cut(s) 24, 100
DpnI GATC 3 cut(s) 186, 270, 383
DpnII GATC 3 cut(s) 184, 268, 381
EciI GGCGGA 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 376
Eco72I CACGTG 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 373
EcoRII CCWGG 3 cut(s) 120, 151, 309
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 1 cut(s) 88
FaiI YATR 6 cut(s) 20, 86, 129, 176, 336, 482
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 4 cut(s) 245, 299, 490, 525
FokI GGATG 2 cut(s) 174, 326
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 4 cut(s) 245, 299, 490, 525
FspBI CTAG 1 cut(s) 440
GluI GCNGC 4 cut(s) 245, 299, 490, 525
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 2 cut(s) 298, 340
HapII CCGG 5 cut(s) 293, 354, 390, 423, 575
HgaI GACGC 2 cut(s) 395, 530
Hin1I GRCGYC 2 cut(s) 36, 387
Hin1II CATG 1 cut(s) 88
HinfI GANTC 2 cut(s) 403, 475
HpaII CCGG 5 cut(s) 293, 354, 390, 423, 575
HphI GGTGA 2 cut(s) 152, 541
Hpy188I TCNGA 2 cut(s) 184, 450
Hpy188III TCNNGA 3 cut(s) 106, 263, 373
Hpy99I CGWCG 2 cut(s) 389, 524
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 6 cut(s) 36, 219, 228, 303, 346, 582
HpyCH4V TGCA 2 cut(s) 517, 564
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 131
HpyF3I CTNAG 2 cut(s) 24, 100
HpySE526I ACGT 6 cut(s) 36, 219, 228, 303, 346, 582
Hsp92I GRCGYC 2 cut(s) 36, 387
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 3 cut(s) 184, 268, 381
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 3 cut(s) 231, 245, 304
MaeI CTAG 1 cut(s) 440
MaeII ACGT 6 cut(s) 36, 219, 228, 303, 346, 582
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 186, 270, 383
MboI GATC 3 cut(s) 184, 268, 381
MboII GAAGA 4 cut(s) 75, 149, 182, 484
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 2 cut(s) 418, 568
MnlI CCTC 6 cut(s) 25, 158, 190, 202, 259, 386
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 1 cut(s) 141
MspI CCGG 5 cut(s) 293, 354, 390, 423, 575
MspR9I CCNGG 6 cut(s) 122, 153, 294, 311, 424, 575
MvaI CCWGG 3 cut(s) 122, 153, 311
MvnI CGCG 1 cut(s) 524
MwoI GCNNNNNNNGC 2 cut(s) 122, 131
NciI CCSGG 3 cut(s) 294, 424, 575
NdeII GATC 3 cut(s) 184, 268, 381
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 297, 340
PaeR7I CTCGAG 1 cut(s) 373
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 245
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 2 cut(s) 403, 475
PfoI TCCNGGA 2 cut(s) 309, 573
PkrI GCNGC 4 cut(s) 246, 300, 491, 526
PmaCI CACGTG 1 cut(s) 347
PmlI CACGTG 1 cut(s) 347
Ppu21I YACGTR 1 cut(s) 347
Psp1406I AACGTT 1 cut(s) 582
Psp6I CCWGG 3 cut(s) 120, 151, 309
PspCI CACGTG 1 cut(s) 347
PspGI CCWGG 3 cut(s) 120, 151, 309
PspN4I GGNNCC 2 cut(s) 297, 340
PspOMI GGGCCC 1 cut(s) 338
PspPI GGNCC 3 cut(s) 296, 338, 339
PsuI RGATCY 1 cut(s) 268
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 4 cut(s) 245, 299, 490, 525
Sau3AI GATC 3 cut(s) 184, 268, 381
Sau96I GGNCC 3 cut(s) 296, 338, 339
ScrFI CCNGG 6 cut(s) 122, 153, 294, 311, 424, 575
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 3 cut(s) 231, 245, 304
Sfr274I CTCGAG 1 cut(s) 373
SlaI CTCGAG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 2 cut(s) 418, 568
SsiI CCGC 6 cut(s) 114, 274, 299, 489, 524, 527
SspI AATATT 1 cut(s) 460
SspMI CTAG 1 cut(s) 440
StyD4I CCNGG 6 cut(s) 120, 151, 292, 309, 422, 573
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 6 cut(s) 39, 222, 231, 306, 349, 585
TaqI TCGA 5 cut(s) 239, 374, 384, 406, 501
TasI AATT 2 cut(s) 418, 568
TauI GCSGC 3 cut(s) 301, 492, 527
TfiI GAWTC 2 cut(s) 403, 475
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 101, 548
XapI RAATTY 2 cut(s) 418, 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XhoI CTCGAG 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 412
XspI CTAG 1 cut(s) 440
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.