Rmu_sc0001879.1_g000005

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001879.1
OG0018927
Physical Location & Seq
Reverse (-)
10916 .. 11350
435 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
atggagccggagatcctcctcttcaaggcctacgagcgcatccttctgctcggaagacaccgtttcgccggcgtcgacatgaggatccgcgtcaagggagaaggtcacacttctcagatctatgccatccgtcagagcatcgccaaggccttggtggcttattaccagaagttcgtggatgagcagagcaagaaggaaatcaaggacattctcgtcatgtatgaccgtactctcctcgtcactgatccaaggctctgcgagccagagctaggtttcgagtggctggtgttgtcagtttcgaatcgcgcctttcggagacagaccgattcggaccagatttgtatgaggaggtggagggtgcggttgggcatgaagtccccagatgtggaggtggagggtgcgatgaatgataaggaacataagggctgggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

144

Amino Acids

16.98

Weight (kDa)

8.9

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 8 - 88 7.3e-13 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018927)

Species Orthologous Gene IDs
pyrus_communis pycom10g08020
rosa_chinensis RchiOBHm_Chr6g0255201
rosa_multiflora Rmu_sc0001879.1_g000005
rosa_roxburghii Rroxscaffold_1G00030090
rosa_rugosa Rorug02G0279800
rosa_samantha Rh3BG175600 Rh3CG166700 Rh4AG078700 Rh4DG213700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 75
AccII CGCG 2 cut(s) 90, 306
AciI CCGC 2 cut(s) 88, 361
AclWI GGATC 4 cut(s) 7, 79, 92, 239
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 4 cut(s) 25, 94, 269, 385
AgsI TTSAA 1 cut(s) 25
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 4 cut(s) 7, 79, 92, 239
AoxI GGCC 2 cut(s) 27, 147
AspLEI GCGC 2 cut(s) 39, 308
AspS9I GGNCC 1 cut(s) 331
AsuII TTCGAA 1 cut(s) 299
AvaII GGWCC 1 cut(s) 331
BamHI GGATCC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 61
BccI CCATC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 155
BglII AGATCT 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 2 cut(s) 6, 86
BmsI GCATC 2 cut(s) 48, 147
BpiI GAAGAC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 144, 150, 248
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 94, 269, 385
Bse118I RCCGGY 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 144, 150, 248
BseGI GGATG 3 cut(s) 39, 126, 184
BseLI CCNNNNNNNGG 4 cut(s) 25, 94, 269, 385
BseMII CTCAG 1 cut(s) 128
BseRI GAGGAG 3 cut(s) 8, 224, 361
BseYI CCCAGC 1 cut(s) 426
Bsh1236I CGCG 2 cut(s) 90, 306
BshFI GGCC 2 cut(s) 29, 149
BsiSI CCGG 2 cut(s) 8, 69
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 4 cut(s) 25, 94, 269, 385
BsmAI GTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 2 cut(s) 29, 149
Bsp119I TTCGAA 1 cut(s) 299
Bsp143I GATC 4 cut(s) 12, 84, 117, 244
BspACI CCGC 2 cut(s) 88, 361
BspANI GGCC 2 cut(s) 29, 149
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 2 cut(s) 90, 306
BspLI GGNNCC 2 cut(s) 6, 86
BspPI GGATC 4 cut(s) 7, 79, 92, 239
BspT104I TTCGAA 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 144, 150, 248
BssMI GATC 4 cut(s) 12, 84, 117, 244
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 3 cut(s) 144, 150, 248
Bst4CI ACNGT 2 cut(s) 62, 227
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 70, 260
BstDEI CTNAG 1 cut(s) 114
BstENI CCTNNNNNAGG 1 cut(s) 23
BstF5I GGATG 3 cut(s) 39, 126, 184
BstFNI CGCG 2 cut(s) 90, 306
BstHHI GCGC 2 cut(s) 39, 308
BstKTI GATC 4 cut(s) 15, 87, 120, 247
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 4 cut(s) 12, 84, 117, 244
BstMWI GCNNNNNNNGC 2 cut(s) 155, 259
BstUI CGCG 2 cut(s) 90, 306
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 3 cut(s) 12, 84, 117
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 3 cut(s) 12, 84, 117
BsuRI GGCC 2 cut(s) 29, 149
BtgZI GCGATG 2 cut(s) 124, 416
BtsCI GGATG 3 cut(s) 39, 126, 184
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 70, 260
CfoI GCGC 2 cut(s) 39, 308
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 2 cut(s) 61, 79
Csp6I GTAC 1 cut(s) 228
CviAII CATG 3 cut(s) 79, 217, 370
CviJI RGCY 9 cut(s) 7, 29, 149, 158, 253, 262, 268, 283, 426
CviKI_1 RGCY 9 cut(s) 7, 29, 149, 158, 253, 262, 268, 283, 426
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 114
DpnI GATC 4 cut(s) 14, 86, 119, 246
DpnII GATC 4 cut(s) 12, 84, 117, 244
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco130I CCWWGG 3 cut(s) 144, 150, 248
Eco147I AGGCCT 2 cut(s) 29, 149
Eco47I GGWCC 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoT14I CCWWGG 3 cut(s) 144, 150, 248
ErhI CCWWGG 3 cut(s) 144, 150, 248
FaeI CATG 3 cut(s) 82, 220, 373
FaiI YATR 7 cut(s) 80, 123, 218, 222, 344, 371, 420
FaqI GGGAC 1 cut(s) 361
FatI CATG 3 cut(s) 78, 216, 369
FblI GTMKAC 1 cut(s) 75
FokI GGATG 3 cut(s) 26, 113, 191
FspBI CTAG 1 cut(s) 269
GlaI GCGC 2 cut(s) 38, 307
GsaI CCCAGC 1 cut(s) 430
HaeIII GGCC 2 cut(s) 29, 149
HapII CCGG 2 cut(s) 8, 69
HgaI GACGC 2 cut(s) 61, 79
HhaI GCGC 2 cut(s) 39, 308
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 82, 220, 373
Hin6I GCGC 2 cut(s) 37, 306
HinP1I GCGC 2 cut(s) 37, 306
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 301, 326
HpaII CCGG 2 cut(s) 8, 69
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 5 cut(s) 53, 117, 135, 315, 331
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 53, 95, 187
HpyCH4III ACNGT 2 cut(s) 62, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 259
HpyF3I CTNAG 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 82, 220, 373
HspAI GCGC 2 cut(s) 37, 306
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 4 cut(s) 12, 84, 117, 244
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 21, 82, 179, 269, 276, 347, 393, 412
LweI GCATC 2 cut(s) 48, 147
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 104, 238
MalI GATC 4 cut(s) 14, 86, 119, 246
MboI GATC 4 cut(s) 12, 84, 117, 244
MboII GAAGA 2 cut(s) 13, 66
MflI RGATCY 3 cut(s) 12, 84, 117
MnlI CCTC 9 cut(s) 26, 29, 75, 245, 339, 342, 348, 382, 388
MreI CGCCGGCG 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 68
MspI CCGG 2 cut(s) 8, 69
MvnI CGCG 2 cut(s) 90, 306
MwoI GCNNNNNNNGC 2 cut(s) 155, 259
NaeI GCCGGC 1 cut(s) 70
NdeII GATC 4 cut(s) 12, 84, 117, 244
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 3 cut(s) 82, 220, 373
NlaIV GGNNCC 2 cut(s) 6, 86
NmuCI GTSAC 2 cut(s) 104, 238
NspV TTCGAA 1 cut(s) 299
PceI AGGCCT 2 cut(s) 29, 149
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 301, 326
PspFI CCCAGC 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 6, 86
PspPI GGNCC 1 cut(s) 331
PsuI RGATCY 3 cut(s) 12, 84, 117
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SalI GTCGAC 1 cut(s) 74
Sau3AI GATC 4 cut(s) 12, 84, 117, 244
Sau96I GGNCC 1 cut(s) 331
SetI ASST 5 cut(s) 106, 270, 274, 353, 393
SfaNI GCATC 2 cut(s) 48, 147
SfuI TTCGAA 1 cut(s) 299
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 331
SseBI AGGCCT 2 cut(s) 29, 149
SsiI CCGC 2 cut(s) 88, 361
SspMI CTAG 1 cut(s) 269
StuI AGGCCT 2 cut(s) 29, 149
StyI CCWWGG 3 cut(s) 144, 150, 248
TaaI ACNGT 2 cut(s) 62, 227
TaqI TCGA 3 cut(s) 75, 276, 299
TaqII GACCGA 1 cut(s) 338
TfiI GAWTC 2 cut(s) 301, 326
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 2 cut(s) 104, 238
Tsp45I GTSAC 2 cut(s) 104, 238
TspDTI ATGAA 2 cut(s) 386, 419
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 331
XagI CCTNNNNNAGG 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.