Rmu_sc0001896.1_g000035

Cgr1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001896.1
OG0020529
Physical Location & Seq
Reverse (-)
98538 .. 100341
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 870 bp
atgtctgcggtgcccctaattcactttttctctctgaaaaattgggattatggttttttgctgaatccccaatttgtgctgaagagattggcggtggtttgggtttggcaaactaaagaccatctcgcttcaatttgtcatcagtcccttcaatttcaagtccttcacctccatcagtccatcgtttccttctctctttcaccggacgcgaacaatctcagatgctctcaaatactcggctcagatgctcttcgagctccgaatctcgaggctctctccctcactcctctattctgttcacgagtcatggtgggtcgagccctgaattccgaccaccttggacagcccatacgagccggtgaccgtgtcactagacctcaatttgctggacagagatcccagagtgaggtttctttgccaggtgggaaaacagaggagggagacaaggatgatggtgacacagcaacaagagaagcgaaagaggagattggtttggatcctaagcttgtgaatgttgtcactgttcttgaaccatttttgtcaaaggtaatagcttttatctttttcgacgaaggcttcggcggcaaaacatacaagcgcaagcggaaccccaaagccgccgccgccgacgaagatgccgccatggaaatcgacgccacctacccacctccggcgaagcgatctttggtgtccttctcgaacaatccggaaaaaccagtcgtaatcgccgggaaggtctccgagcgaaagtggaagcagccgaggaagcagaggtcgtcggtggttcaggtgagtcggaaggggacaatgttcgaggagagggagaagaacaagtcggtgaagaagacgtacagagaatggcgaagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cgr1

Protein Analysis

289

Amino Acids

32.46

Weight (kDa)

9.59

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 134 - 189 5.4e-08 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020529)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0493791
rosa_multiflora Rmu_sc0001896.1_g000035 Rmu_sc0010445.1_g000009
rosa_samantha Rh2BG613100 Rh3AG312800 Rh7CG150200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AccII CGCG 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 706
AciI CCGC 8 cut(s) 8, 92, 582, 604, 618, 621, 624, 639
AclWI GGATC 3 cut(s) 390, 491, 504
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 101
AcyI GRCGYC 1 cut(s) 654
AfaI GTAC 1 cut(s) 851
AfiI CCNNNNNNNGG 2 cut(s) 406, 670
AgsI TTSAA 4 cut(s) 132, 152, 158, 530
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 4 cut(s) 257, 505, 554, 867
AluI AGCT 4 cut(s) 257, 505, 554, 867
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 435, 742
AlwI GGATC 3 cut(s) 390, 491, 504
Ama87I CYCGRG 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 706
ApeKI GCWGC 1 cut(s) 757
ApoI RAATTY 1 cut(s) 325
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AspLEI GCGC 1 cut(s) 600
AsuC2I CCSGG 1 cut(s) 730
AsuHPI GGTGA 6 cut(s) 158, 192, 371, 467, 802, 850
AvaI CYCGRG 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 15
BamHI GGATCC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 2 cut(s) 259, 322
BarI GAAGNNNNNNTAC 2 cut(s) 833, 865
BauI CACGAG 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 851
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 769
BccI CCATC 4 cut(s) 129, 180, 188, 446
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 420
BcnI CCSGG 1 cut(s) 730
BcoDI GTCTC 2 cut(s) 435, 742
BfaI CTAG 1 cut(s) 372
BisI GCNGC 6 cut(s) 583, 618, 621, 624, 639, 758
BlsI GCNGC 6 cut(s) 584, 619, 622, 625, 640, 759
Bme1390I CCNGG 2 cut(s) 420, 730
BmeT110I CYCGRG 1 cut(s) 266
BmiI GGNNCC 3 cut(s) 12, 498, 608
BmrFI CCNGG 2 cut(s) 420, 730
BmsI GCATC 3 cut(s) 212, 235, 625
BpiI GAAGAC 1 cut(s) 851
BplI GAGNNNNNCTC 2 cut(s) 260, 292
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 730
BsaHI GRCGYC 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 742
BsaJI CCNNGG 3 cut(s) 337, 642, 761
BsaWI WCCGGW 2 cut(s) 202, 706
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 670
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 716
BseAI TCCGGA 1 cut(s) 706
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 337, 642, 761
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 2 cut(s) 406, 670
BseMII CTCAG 2 cut(s) 232, 255
BseNI ACTGG 1 cut(s) 716
BseRI GAGGAG 4 cut(s) 276, 449, 497, 830
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 1 cut(s) 769
Bsh1236I CGCG 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 5 cut(s) 203, 357, 671, 707, 729
BslFI GGGAC 2 cut(s) 130, 817
BslI CCNNNNNNNGG 2 cut(s) 406, 670
BsmAI GTCTC 2 cut(s) 435, 742
BsmFI GGGAC 2 cut(s) 130, 817
Bso31I GGTCTC 1 cut(s) 742
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 3 cut(s) 15, 259, 322
Bsp13I TCCGGA 1 cut(s) 706
Bsp143I GATC 3 cut(s) 395, 496, 680
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 8 cut(s) 8, 92, 582, 604, 618, 621, 624, 639
BspCNI CTCAG 2 cut(s) 231, 254
BspEI TCCGGA 1 cut(s) 706
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 3 cut(s) 12, 498, 608
BspPI GGATC 3 cut(s) 390, 491, 504
BspQI GCTCTTC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 1 cut(s) 716
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 337, 642, 761
BssMI GATC 3 cut(s) 395, 496, 680
BssNI GRCGYC 1 cut(s) 654
BssSI CACGAG 1 cut(s) 300
BssT1I CCWWGG 2 cut(s) 337, 642
Bst2BI CACGAG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 365, 523
Bst6I CTCTTC 2 cut(s) 77, 255
BstACI GRCGYC 1 cut(s) 654
BstC8I GCNNGC 1 cut(s) 602
BstDEI CTNAG 3 cut(s) 218, 241, 501
BstDSI CCRYGG 1 cut(s) 642
BstEII GGTNACC 1 cut(s) 359
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 3 cut(s) 398, 499, 683
BstMAI GTCTC 2 cut(s) 435, 742
BstMBI GATC 3 cut(s) 395, 496, 680
BstMWI GCNNNNNNNGC 4 cut(s) 254, 582, 623, 766
BstNI CCWGG 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 418, 728
BstSLI GKGCMC 1 cut(s) 15
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 769
BstV2I GAAGAC 1 cut(s) 851
BstX2I RGATCY 2 cut(s) 395, 496
BstYI RGATCY 2 cut(s) 395, 496
BtgI CCRYGG 1 cut(s) 642
BtsCI GGATG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 1 cut(s) 602
CfoI GCGC 1 cut(s) 600
Cfr10I RCCGGY 1 cut(s) 356
CseI GACGC 2 cut(s) 215, 662
Csp6I GTAC 1 cut(s) 850
CviAII CATG 2 cut(s) 307, 643
CviQI GTAC 1 cut(s) 850
DdeI CTNAG 3 cut(s) 218, 241, 501
DpnI GATC 3 cut(s) 397, 498, 682
DpnII GATC 3 cut(s) 395, 496, 680
Eam1104I CTCTTC 2 cut(s) 77, 255
EarI CTCTTC 2 cut(s) 77, 255
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 337, 642
Eco24I GRGCYC 2 cut(s) 259, 322
Eco31I GGTCTC 1 cut(s) 742
Eco53kI GAGCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 337, 642
EcoT38I GRGCYC 2 cut(s) 259, 322
ErhI CCWWGG 2 cut(s) 337, 642
FaeI CATG 2 cut(s) 310, 646
FaiI YATR 5 cut(s) 51, 308, 350, 592, 644
FaqI GGGAC 2 cut(s) 130, 817
FatI CATG 2 cut(s) 306, 642
Fnu4HI GCNGC 6 cut(s) 583, 618, 621, 624, 639, 758
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 2 cut(s) 259, 322
Fsp4HI GCNGC 6 cut(s) 583, 618, 621, 624, 639, 758
FspBI CTAG 1 cut(s) 372
GlaI GCGC 1 cut(s) 599
GluI GCNGC 6 cut(s) 583, 618, 621, 624, 639, 758
HapII CCGG 5 cut(s) 203, 357, 671, 707, 729
HgaI GACGC 2 cut(s) 215, 662
HhaI GCGC 1 cut(s) 600
Hin1I GRCGYC 1 cut(s) 654
Hin1II CATG 2 cut(s) 310, 646
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 4 cut(s) 64, 262, 303, 793
HpaII CCGG 5 cut(s) 203, 357, 671, 707, 729
HphI GGTGA 6 cut(s) 158, 192, 371, 467, 802, 850
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 7 cut(s) 36, 221, 244, 261, 331, 742, 798
Hpy188III TCNNGA 5 cut(s) 266, 300, 527, 697, 707
Hpy8I GTNNAC 1 cut(s) 299
Hpy99I CGWCG 4 cut(s) 572, 632, 656, 781
HpyAV CCTTC 7 cut(s) 158, 173, 199, 566, 703, 727, 793
HpyCH4III ACNGT 2 cut(s) 365, 523
HpyCH4IV ACGT 1 cut(s) 848
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 582, 623, 766
HpyF3I CTNAG 3 cut(s) 218, 241, 501
HpySE526I ACGT 1 cut(s) 848
Hsp92I GRCGYC 1 cut(s) 654
Hsp92II CATG 2 cut(s) 310, 646
HspAI GCGC 1 cut(s) 598
Kpn2I TCCGGA 1 cut(s) 706
Kzo9I GATC 3 cut(s) 395, 496, 680
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 1 cut(s) 769
LweI GCATC 3 cut(s) 212, 235, 625
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 4 cut(s) 359, 367, 455, 517
MalI GATC 3 cut(s) 397, 498, 682
MboI GATC 3 cut(s) 395, 496, 680
MboII GAAGA 6 cut(s) 94, 242, 644, 838, 853, 856
MflI RGATCY 2 cut(s) 395, 496
MhlI GDGCHC 3 cut(s) 15, 259, 322
MluCI AATT 7 cut(s) 18, 40, 71, 132, 152, 325, 380
MlyI GAGTC 2 cut(s) 312, 802
MmeI TCCRAC 2 cut(s) 354, 776
MroI TCCGGA 1 cut(s) 706
MspI CCGG 5 cut(s) 203, 357, 671, 707, 729
MspR9I CCNGG 2 cut(s) 420, 730
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 4 cut(s) 254, 582, 623, 766
NciI CCSGG 1 cut(s) 730
NcoI CCATGG 1 cut(s) 642
NdeII GATC 3 cut(s) 395, 496, 680
NlaIII CATG 2 cut(s) 310, 646
NlaIV GGNNCC 3 cut(s) 12, 498, 608
NmeAIII GCCGAG 2 cut(s) 216, 786
NmuCI GTSAC 4 cut(s) 359, 367, 455, 517
PaeR7I CTCGAG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 64, 262
PflFI GACNNNGTC 1 cut(s) 365
PkrI GCNGC 6 cut(s) 584, 619, 622, 625, 640, 759
PleI GAGTC 2 cut(s) 311, 801
PpsI GAGTC 2 cut(s) 311, 801
Psp124BI GAGCTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 418
PspEI GGTNACC 1 cut(s) 359
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 3 cut(s) 12, 498, 608
PsuI RGATCY 2 cut(s) 395, 496
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 1 cut(s) 851
RsaNI GTAC 1 cut(s) 850
SacI GAGCTC 1 cut(s) 259
SapI GCTCTTC 1 cut(s) 255
SatI GCNGC 6 cut(s) 583, 618, 621, 624, 639, 758
Sau3AI GATC 3 cut(s) 395, 496, 680
SchI GAGTC 2 cut(s) 312, 802
ScrFI CCNGG 2 cut(s) 420, 730
SduI GDGCHC 3 cut(s) 15, 259, 322
SfaNI GCATC 3 cut(s) 212, 235, 625
Sfr274I CTCGAG 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 7 cut(s) 18, 40, 71, 132, 152, 325, 380
SsiI CCGC 8 cut(s) 8, 92, 582, 604, 618, 621, 624, 639
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 418, 728
StyI CCWWGG 2 cut(s) 337, 642
TaaI ACNGT 2 cut(s) 365, 523
TaiI ACGT 1 cut(s) 851
TaqI TCGA 7 cut(s) 253, 267, 316, 567, 651, 698, 813
TasI AATT 7 cut(s) 18, 40, 71, 132, 152, 325, 380
TauI GCSGC 5 cut(s) 585, 620, 623, 626, 641
TfiI GAWTC 2 cut(s) 64, 262
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 4 cut(s) 359, 367, 455, 517
TseI GCWGC 1 cut(s) 757
Tsp45I GTSAC 4 cut(s) 359, 367, 455, 517
TspRI CASTG 1 cut(s) 526
Tth111I GACNNNGTC 1 cut(s) 365
XapI RAATTY 1 cut(s) 325
XhoI CTCGAG 1 cut(s) 266
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.