Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010445.1

Orthogroup ID

OG0020529

Physical Location & Seq

Genomic Coordinates Forward (+)

26168 .. 30825

Gene Structure 4658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010445.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgattgccactgcgcggaagacgaaaacagagatcgatagtatgagtgatacctgccgctttctagcgagccagatctcgtgttcatgcttcgcgatactaggaaagctccgccgcactgatagaggatggccagtgccctatttttgctcgatgattctgggcaccccaactgttgaaatccccaggagtccttcggaggactggaatgggccgacgaacgggcaggccatagaaggcgatgacgtcggccagaatagagtctcgtggcgctgggcccagtccgacatggtggacgcgaacaatctcagatgctctcaaatactcggctcagatgctcttcgagctccgaatctcgaggctctctccctcactcctctattctgttcacgagtcatggtgggtcgagccctgaattccgaccaccttggacagcccatacgagccggtgaccgtgtcactagacctcaatttgctggacagagatcccagagtgaggtttctttgccaggtgggaaaacagaggagggagacaaggatgatggtgacacagcaacaagagaagcgaaagaggagattggtttggatcctaagcttgtgaatgttgtcactgttcttgaaccatttttgtcaaagagatatgatgctgacgcaactgtcctgggcatccaagttggatgtggattgcattcaagagatgagtctagagctaatgttgcacaagataatgaatttgttcatcagattcttcaagcatatgctgcacaagatggaaattggattgctcatattgcagcattacttgtgggtgaggatagaacacaatcttgtatagcttatgaaattggaaggcttagttcaatgaaatgtttaaatgcttgtaatgttgtatatggtgaatcgattggagtttgtttaatgtatcaaagttacttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

312

Amino Acids

34.16

Weight (kDa)

5.14

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020529)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0493791
rosa_multiflora	Rmu_sc0001896.1_g000035 Rmu_sc0010445.1_g000009
rosa_samantha	Rh2BG613100 Rh3AG312800 Rh7CG150200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	656
AatII	GACGTC	1 cut(s)	249
Acc36I	ACCTGC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	3 cut(s)	16, 95, 299
AciI	CCGC	4 cut(s)	16, 58, 112, 115
AclWI	GGATC	3 cut(s)	480, 581, 594
AcoI	YGGCCR	2 cut(s)	131, 250
AcsI	RAATTY	2 cut(s)	415, 731
AcyI	GRCGYC	1 cut(s)	246
AfiI	CCNNNNNNNGG	3 cut(s)	15, 221, 496
AgsI	TTSAA	5 cut(s)	179, 620, 693, 752, 861
AjnI	CCWGG	3 cut(s)	185, 508, 660
AluBI	AGCT	5 cut(s)	109, 347, 595, 710, 836
AluI	AGCT	5 cut(s)	109, 347, 595, 710, 836
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	268, 525
AlwI	GGATC	3 cut(s)	480, 581, 594
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	5 cut(s)	131, 212, 228, 250, 276
ApaI	GGGCCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	761, 794
ApoI	RAATTY	2 cut(s)	415, 731
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	16, 273
AspS9I	GGNCC	3 cut(s)	212, 276, 277
AsuHPI	GGTGA	4 cut(s)	461, 557, 821, 908
AvaI	CYCGRG	1 cut(s)	356
BaeGI	GKGCMC	3 cut(s)	141, 167, 280
BalI	TGGCCA	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	3 cut(s)	280, 349, 412
BauI	CACGAG	3 cut(s)	79, 265, 390
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	748, 806
BccI	CCATC	3 cut(s)	123, 536, 764
BciT130I	CCWGG	3 cut(s)	187, 510, 662
BcoDI	GTCTC	2 cut(s)	268, 525
BfaI	CTAG	4 cut(s)	65, 101, 462, 705
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	4 cut(s)	58, 115, 762, 795
BlsI	GCNGC	4 cut(s)	59, 116, 763, 796
Bme1390I	CCNGG	3 cut(s)	187, 510, 662
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	3 cut(s)	212, 276, 277
BmiI	GGNNCC	3 cut(s)	166, 278, 588
BmrFI	CCNGG	3 cut(s)	187, 510, 662
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	4 cut(s)	302, 325, 634, 675
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
Bpu10I	CCTNAGC	1 cut(s)	591
Bsa29I	ATCGAT	2 cut(s)	36, 902
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	185, 427, 661
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 221, 496
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	3 cut(s)	134, 209, 280
BseBI	CCWGG	3 cut(s)	187, 510, 662
BseCI	ATCGAT	2 cut(s)	36, 902
BseDI	CCNNGG	3 cut(s)	185, 427, 661
BseGI	GGATG	4 cut(s)	134, 544, 666, 683
BseLI	CCNNNNNNNGG	3 cut(s)	15, 221, 496
BseMII	CTCAG	2 cut(s)	322, 345
BseNI	ACTGG	3 cut(s)	134, 209, 280
BseRI	GAGGAG	3 cut(s)	366, 539, 587
BseSI	GKGCMC	3 cut(s)	141, 167, 280
BseXI	GCAGC	2 cut(s)	748, 806
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	747
Bsh1236I	CGCG	3 cut(s)	16, 95, 299
BshFI	GGCC	5 cut(s)	133, 214, 230, 252, 278
BshNI	GGYRCC	1 cut(s)	164
BshVI	ATCGAT	2 cut(s)	36, 902
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	15, 221, 496
BsmAI	GTCTC	2 cut(s)	268, 525
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	5 cut(s)	133, 214, 230, 252, 278
BsoBI	CYCGRG	1 cut(s)	356
Bsp120I	GGGCCC	1 cut(s)	276
Bsp1286I	GDGCHC	5 cut(s)	141, 167, 280, 349, 412
Bsp143I	GATC	4 cut(s)	33, 75, 485, 586
Bsp68I	TCGCGA	1 cut(s)	95
BspACI	CCGC	4 cut(s)	16, 58, 112, 115
BspANI	GGCC	5 cut(s)	133, 214, 230, 252, 278
BspCNI	CTCAG	2 cut(s)	321, 344
BspDI	ATCGAT	2 cut(s)	36, 902
BspFNI	CGCG	3 cut(s)	16, 95, 299
BspLI	GGNNCC	3 cut(s)	166, 278, 588
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	3 cut(s)	480, 581, 594
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	134, 209, 280
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	3 cut(s)	185, 427, 661
BssMI	GATC	4 cut(s)	33, 75, 485, 586
BssNI	GRCGYC	1 cut(s)	246
BssSI	CACGAG	3 cut(s)	79, 265, 390
BssT1I	CCWWGG	1 cut(s)	427
Bst2BI	CACGAG	3 cut(s)	79, 265, 390
Bst2UI	CCWGG	3 cut(s)	187, 510, 662
Bst4CI	ACNGT	4 cut(s)	175, 455, 613, 658
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	2 cut(s)	70, 228
BstDEI	CTNAG	4 cut(s)	308, 331, 591, 854
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	4 cut(s)	134, 544, 666, 683
BstFNI	CGCG	3 cut(s)	16, 95, 299
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	2 cut(s)	16, 273
BstKTI	GATC	4 cut(s)	36, 78, 488, 589
BstMAI	GTCTC	2 cut(s)	268, 525
BstMBI	GATC	4 cut(s)	33, 75, 485, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 716, 761, 791
BstNI	CCWGG	3 cut(s)	187, 510, 662
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	185, 508, 660
BstSLI	GKGCMC	3 cut(s)	141, 167, 280
BstUI	CGCG	3 cut(s)	16, 95, 299
BstV1I	GCAGC	2 cut(s)	748, 806
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	3 cut(s)	75, 485, 586
BstYI	RGATCY	3 cut(s)	75, 485, 586
Bsu15I	ATCGAT	2 cut(s)	36, 902
BsuRI	GGCC	5 cut(s)	133, 214, 230, 252, 278
BsuTUI	ATCGAT	2 cut(s)	36, 902
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	4 cut(s)	134, 544, 666, 683
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	4 cut(s)	9, 117, 141, 609
BtuMI	TCGCGA	1 cut(s)	95
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	70, 228
CfoI	GCGC	2 cut(s)	16, 273
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	3 cut(s)	212, 276, 277
ClaI	ATCGAT	2 cut(s)	36, 902
CseI	GACGC	2 cut(s)	305, 659
CviAII	CATG	3 cut(s)	87, 289, 397
DdeI	CTNAG	4 cut(s)	308, 331, 591, 854
DpnI	GATC	4 cut(s)	35, 77, 487, 588
DpnII	GATC	4 cut(s)	33, 75, 485, 586
DraI	TTTAAA	1 cut(s)	873
DrdI	GACNNNNNNGTC	1 cut(s)	656
DseDI	GACNNNNNNGTC	1 cut(s)	656
EaeI	YGGCCR	2 cut(s)	131, 250
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	427
Eco24I	GRGCYC	3 cut(s)	280, 349, 412
Eco53kI	GAGCTC	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	3 cut(s)	185, 508, 660
EcoT14I	CCWWGG	1 cut(s)	427
EcoT38I	GRGCYC	3 cut(s)	280, 349, 412
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	3 cut(s)	90, 292, 400
FatI	CATG	3 cut(s)	86, 288, 396
FauNDI	CATATG	1 cut(s)	757
Fnu4HI	GCNGC	4 cut(s)	58, 115, 762, 795
FokI	GGATG	4 cut(s)	141, 551, 653, 690
FriOI	GRGCYC	3 cut(s)	280, 349, 412
Fsp4HI	GCNGC	4 cut(s)	58, 115, 762, 795
FspBI	CTAG	4 cut(s)	65, 101, 462, 705
GlaI	GCGC	2 cut(s)	15, 272
GluI	GCNGC	4 cut(s)	58, 115, 762, 795
GsaI	CCCAGC	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	5 cut(s)	133, 214, 230, 252, 278
HapII	CCGG	1 cut(s)	447
HgaI	GACGC	2 cut(s)	305, 659
HhaI	GCGC	2 cut(s)	16, 273
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	90, 292, 400
Hin6I	GCGC	2 cut(s)	14, 271
HinP1I	GCGC	2 cut(s)	14, 271
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	8 cut(s)	157, 190, 261, 352, 393, 701, 745, 899
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	4 cut(s)	461, 557, 821, 908
Hpy166II	GTNNAC	2 cut(s)	295, 389
Hpy188I	TCNGA	7 cut(s)	199, 286, 311, 334, 351, 421, 744
Hpy188III	TCNNGA	6 cut(s)	94, 356, 390, 617, 693, 705
Hpy8I	GTNNAC	2 cut(s)	295, 389
Hpy99I	CGWCG	2 cut(s)	220, 251
HpyAV	CCTTC	3 cut(s)	204, 230, 843
HpyCH4III	ACNGT	4 cut(s)	175, 455, 613, 658
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	688, 719, 764, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 716, 761, 791
HpyF3I	CTNAG	4 cut(s)	308, 331, 591, 854
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	90, 292, 400
HspAI	GCGC	2 cut(s)	14, 271
Kzo9I	GATC	4 cut(s)	33, 75, 485, 586
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	114, 352
Lsp1109I	GCAGC	2 cut(s)	748, 806
LweI	GCATC	4 cut(s)	302, 325, 634, 675
MaeI	CTAG	4 cut(s)	65, 101, 462, 705
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	5 cut(s)	449, 457, 545, 607, 929
MalI	GATC	4 cut(s)	35, 77, 487, 588
MboI	GATC	4 cut(s)	33, 75, 485, 586
MboII	GAAGA	3 cut(s)	31, 332, 740
MflI	RGATCY	3 cut(s)	75, 485, 586
MhlI	GDGCHC	5 cut(s)	141, 167, 280, 349, 412
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	5 cut(s)	415, 470, 731, 775, 843
MluNI	TGGCCA	1 cut(s)	133
MlyI	GAGTC	4 cut(s)	199, 270, 402, 710
MmeI	TCCRAC	3 cut(s)	309, 444, 655
Mox20I	TGGCCA	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	3 cut(s)	872, 917, 937
Msp20I	TGGCCA	1 cut(s)	133
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	3 cut(s)	187, 510, 662
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	3 cut(s)	187, 510, 662
MvnI	CGCG	3 cut(s)	16, 95, 299
MwoI	GCNNNNNNNGC	4 cut(s)	344, 716, 761, 791
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	4 cut(s)	33, 75, 485, 586
NlaIII	CATG	3 cut(s)	90, 292, 400
NlaIV	GGNNCC	3 cut(s)	166, 278, 588
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	4 cut(s)	449, 457, 545, 607
NruI	TCGCGA	1 cut(s)	95
PaeR7I	CTCGAG	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	4 cut(s)	157, 352, 745, 899
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	4 cut(s)	59, 116, 763, 796
PleI	GAGTC	4 cut(s)	198, 269, 401, 709
PpsI	GAGTC	4 cut(s)	198, 269, 401, 709
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	3 cut(s)	185, 508, 660
PspEI	GGTNACC	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	3 cut(s)	185, 508, 660
PspN4I	GGNNCC	3 cut(s)	166, 278, 588
PspOMI	GGGCCC	1 cut(s)	276
PspPI	GGNCC	3 cut(s)	212, 276, 277
PsuI	RGATCY	3 cut(s)	75, 485, 586
PsyI	GACNNNGTC	1 cut(s)	455
RruI	TCGCGA	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	872, 917, 937
SatI	GCNGC	4 cut(s)	58, 115, 762, 795
Sau3AI	GATC	4 cut(s)	33, 75, 485, 586
Sau96I	GGNCC	3 cut(s)	212, 276, 277
SchI	GAGTC	4 cut(s)	199, 270, 402, 710
ScrFI	CCNGG	3 cut(s)	187, 510, 662
SduI	GDGCHC	5 cut(s)	141, 167, 280, 349, 412
SfaNI	GCATC	4 cut(s)	302, 325, 634, 675
Sfr274I	CTCGAG	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	5 cut(s)	415, 470, 731, 775, 843
SsiI	CCGC	4 cut(s)	16, 58, 112, 115
SspMI	CTAG	4 cut(s)	65, 101, 462, 705
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	3 cut(s)	185, 508, 660
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	4 cut(s)	175, 455, 613, 658
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	6 cut(s)	36, 152, 343, 357, 406, 902
TasI	AATT	5 cut(s)	415, 470, 731, 775, 843
TauI	GCSGC	2 cut(s)	60, 117
TfiI	GAWTC	4 cut(s)	157, 352, 745, 899
Tru1I	TTAA	3 cut(s)	872, 917, 937
Tru9I	TTAA	3 cut(s)	872, 917, 937
TscAI	CASTG	4 cut(s)	16, 124, 141, 616
TseFI	GTSAC	4 cut(s)	449, 457, 545, 607
TseI	GCWGC	2 cut(s)	761, 794
Tsp45I	GTSAC	4 cut(s)	449, 457, 545, 607
TspDTI	ATGAA	5 cut(s)	75, 728, 744, 855, 878
TspRI	CASTG	4 cut(s)	16, 124, 141, 616
Tth111I	GACNNNGTC	1 cut(s)	455
XapI	RAATTY	2 cut(s)	415, 731
XbaI	TCTAGA	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	677
XhoI	CTCGAG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	4 cut(s)	65, 101, 462, 705
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.