Rh7CG150200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0020529
Physical Location & Seq
Forward (+)
12299444 .. 12302193
2750 bp
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UTR
Exon/CDS
Intron
Rh7CG150200.1

Sequence Viewer

Length: 204 bp
ATGGTGGGTCGAGCCCTGAATTCCGACCACCTTGGACAGCCCATACGAGCCAGTGATCGGTCGATCCCAGAGTTAGCCGCTGTGGTGGATCCTTTTGACGTTTTTGATGCGTACTTTGGGGGAAGGGGTGAATCAGGAGGCATGAGCTTCAATTCGTTAACTCAGGAAATCAGGGCCTTGGCATTCGGTATGAACTGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.18

Weight (kDa)

4.7

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020529)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0493791
rosa_multiflora Rmu_sc0001896.1_g000035 Rmu_sc0010445.1_g000009
rosa_samantha Rh2BG613100 Rh3AG312800 Rh7CG150200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AclWI GGATC 3 cut(s) 58, 83, 96
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
AlwI GGATC 3 cut(s) 58, 83, 96
AoxI GGCC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 140
BamHI GGATCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 16
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 31, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 31, 177
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 57
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 3 cut(s) 55, 63, 88
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 3 cut(s) 58, 83, 96
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 31, 177
BssMI GATC 3 cut(s) 55, 63, 88
BssT1I CCWWGG 2 cut(s) 31, 177
BstDEI CTNAG 1 cut(s) 162
BstKTI GATC 3 cut(s) 58, 66, 91
BstMBI GATC 3 cut(s) 55, 63, 88
BstMCI CGRYCG 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 142
CviJI RGCY 6 cut(s) 14, 40, 50, 77, 147, 176
CviKI_1 RGCY 6 cut(s) 14, 40, 50, 77, 147, 176
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 162
DpnI GATC 3 cut(s) 57, 65, 90
DpnII GATC 3 cut(s) 55, 63, 88
Eco130I CCWWGG 2 cut(s) 31, 177
Eco24I GRGCYC 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 19
EcoT14I CCWWGG 2 cut(s) 31, 177
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 31, 177
FaeI CATG 1 cut(s) 145
FaiI YATR 3 cut(s) 44, 143, 191
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 176
Hin1II CATG 1 cut(s) 145
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 1 cut(s) 131
HpaI GTTAAC 1 cut(s) 159
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 135, 164
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 117
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 1 cut(s) 145
KspAI GTTAAC 1 cut(s) 159
Kzo9I GATC 3 cut(s) 55, 63, 88
LpnPI CCDG 6 cut(s) 29, 64, 81, 120, 149, 157
LweI GCATC 1 cut(s) 97
MaeII ACGT 1 cut(s) 99
MalI GATC 3 cut(s) 57, 65, 90
MboI GATC 3 cut(s) 55, 63, 88
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 19, 151
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 1 cut(s) 131
MseI TTAA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 182
NdeII GATC 3 cut(s) 55, 63, 88
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 1 cut(s) 90
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 55, 63, 88
Sau96I GGNCC 1 cut(s) 174
SduI GDGCHC 1 cut(s) 16
SetI ASST 3 cut(s) 33, 102, 149
SfaNI GCATC 1 cut(s) 97
Sse9I AATT 2 cut(s) 19, 151
SsiI CCGC 1 cut(s) 78
StyI CCWWGG 2 cut(s) 31, 177
TaiI ACGT 1 cut(s) 102
TaqI TCGA 2 cut(s) 10, 62
TaqII GACCGA 1 cut(s) 48
TasI AATT 2 cut(s) 19, 151
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 58
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.