Rh2BG613100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0020529
Physical Location & Seq
Forward (+)
83526889 .. 83545950
19062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG613100.1

Sequence Viewer

Length: 255 bp
ATGGATTGTCCACACATAAAGAGAGCTAATTTTGATTTCAATTTTTATCAGGACGCGAACAATCTCAGATGCTCTCAAATACTCGGCTCAGATGCTCTTCGAGCTCCGAATCTCGAGGCTCTCTCCCTCACTCCTCTATTCTGTTCACGAGTCATGGTGGGTCGAGCCCTGAATTCCGACCACCTTGGACAGCCCATACGAGCCGGTGACCGTGTCACTAGACCTCAATTTGCTGGACAGAGATCCCAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.38

Weight (kDa)

9.15

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020529)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0493791
rosa_multiflora Rmu_sc0001896.1_g000035 Rmu_sc0010445.1_g000009
rosa_samantha Rh2BG613100 Rh3AG312800 Rh7CG150200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 56
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 172
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 2 cut(s) 26, 104
AluI AGCT 2 cut(s) 26, 104
Alw21I GWGCWC 1 cut(s) 106
AlwI GGATC 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 113
ApoI RAATTY 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 113
BanII GRGCYC 2 cut(s) 106, 169
BauI CACGAG 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 106
BfaI CTAG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 113
BmsI GCATC 2 cut(s) 59, 82
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BsaJI CCNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 79, 102
BseRI GAGGAG 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 106, 169
Bsp143I GATC 1 cut(s) 242
BspCNI CTCAG 2 cut(s) 78, 101
BspFNI CGCG 1 cut(s) 56
BspPI GGATC 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 65, 88
BstEII GGTNACC 1 cut(s) 206
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstPI GGTNACC 1 cut(s) 206
BstUI CGCG 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 203
CseI GACGC 1 cut(s) 62
CviAII CATG 1 cut(s) 154
CviJI RGCY 7 cut(s) 26, 87, 104, 119, 167, 193, 203
CviKI_1 RGCY 7 cut(s) 26, 87, 104, 119, 167, 193, 203
DdeI CTNAG 2 cut(s) 65, 88
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 2 cut(s) 106, 169
Eco53kI GAGCTC 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 2 cut(s) 106, 169
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 157
FaiI YATR 3 cut(s) 17, 155, 197
FatI CATG 1 cut(s) 153
FriOI GRGCYC 2 cut(s) 106, 169
FspBI CTAG 1 cut(s) 219
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 62
Hin1II CATG 1 cut(s) 157
HinfI GANTC 2 cut(s) 109, 150
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 11, 146
Hpy188I TCNGA 4 cut(s) 68, 91, 108, 178
Hpy188III TCNNGA 3 cut(s) 50, 113, 147
Hpy8I GTNNAC 2 cut(s) 11, 146
HpyCH4III ACNGT 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 65, 88
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 1 cut(s) 242
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 4 cut(s) 35, 182, 217, 219
LweI GCATC 2 cut(s) 59, 82
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 206, 214
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 89
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 2 cut(s) 106, 169
MluCI AATT 4 cut(s) 28, 40, 172, 227
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 4 cut(s) 109, 137, 144, 234
MspI CCGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 1 cut(s) 242
NlaIII CATG 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 206, 214
PaeR7I CTCGAG 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 109
PflFI GACNNNGTC 1 cut(s) 212
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 206
PsuI RGATCY 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 212
SacI GAGCTC 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 242
SchI GAGTC 1 cut(s) 159
SduI GDGCHC 2 cut(s) 106, 169
SetI ASST 4 cut(s) 28, 106, 186, 226
SfaNI GCATC 2 cut(s) 59, 82
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 4 cut(s) 28, 40, 172, 227
SspMI CTAG 1 cut(s) 219
SstI GAGCTC 1 cut(s) 106
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 100, 114, 163
TasI AATT 4 cut(s) 28, 40, 172, 227
TfiI GAWTC 1 cut(s) 109
TseFI GTSAC 2 cut(s) 206, 214
Tsp45I GTSAC 2 cut(s) 206, 214
Tth111I GACNNNGTC 1 cut(s) 212
XapI RAATTY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 113
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.