Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0019194

Physical Location & Seq

Genomic Coordinates Forward (+)

114001 .. 115125

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atggaactgccggatctgccgagtgagatgtgggaatgcatattcctgcatgctaaactgtctgcgaaaactctagtccagttgagttgcttttgcagggtatggcgtttggcaattttctccccaacatttatcaaggcatacgatgaaagtgacagtggcaagactggtttattgctttttcaaactcaactgaagttggtttactggctgttctcgactgatatcaataactgggtttcctttataaatagtcctttggagattcggggcctttcaatcgttggctcttgcaggggactcatttgtttcagtgagccctatgggatgattttaaatccaccaatatatgtctggaatccttccattcggagactgaggcagttaccacagggacatatccaaatagaagaaggggatcaagatggtgatgttattgttcctactgccattggtctaggatttgatgctaagagatatgactataaagtggttaaaataaggtgcactggatcgacggagatgatgaatcctttgtatgaagtcgaagagtacagtctgaggtccaatgtttggacaaggttgctgccactgaatgtcgcacttggtgataatgaaaccttactttttcaaagcggcgatggcatttacttgtcaggctttgtgtactggatgcttgcccgtaacaatgaaggcatgctgtgctatgatctggcagatcaaagatttacagtgcaagcatatccagagcctccactttttcagaatgatcatcaaatttcggctggagttcatcatctgtcactttcatttctcacttggaggcagcaagatggtcattttatatgtcaagtccacaccaagcagaaaaatgaggaagaccaagagcagtggacactcatttgcagcattgaccttcaaagtccttttgcaatatctcggccactggcttacacaccaaaaggtggatatctcataggaattgaacgtgatggtacagaggacaggagtctgctcattcttgatcaagctacaaacgaagtggtagcttttgatattgacttgccacatgaggatgatgaattctatgttgatgtgtataccgagaatttgcagttactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

374

Amino Acids

42.9

Weight (kDa)

4.69

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	92 - 320	4e-13	F-box associated beta propeller domain
FBA_3	PF08268	92 - 247	1.4e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16010
rosa_laevigata	RLG00000017434
rosa_multiflora	Rmu_sc0001942.1_g000028
rosa_samantha	Rh2CG184000 Rh2CG184100 Rh4AG014600 Rh4DG010200
rosa_wichuraiana	Rw2G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccB7I	CCANNNNNTGG	2 cut(s)	573, 965
AccI	GTMKAC	1 cut(s)	1100
AciI	CCGC	1 cut(s)	636
AclWI	GGATC	3 cut(s)	21, 426, 520
AcoI	YGGCCR	1 cut(s)	941
AcsI	RAATTY	3 cut(s)	777, 1082, 1108
AcuI	CTGAAG	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	608
AfaI	GTAC	3 cut(s)	554, 668, 997
AfiI	CCNNNNNNNGG	2 cut(s)	573, 965
AgsI	TTSAA	5 cut(s)	185, 279, 632, 920, 986
AluBI	AGCT	2 cut(s)	1031, 1049
AluI	AGCT	2 cut(s)	1031, 1049
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	367
Alw44I	GTGCAC	1 cut(s)	505
AlwI	GGATC	3 cut(s)	21, 426, 520
AlwNI	CAGNNNCTG	1 cut(s)	1120
AoxI	GGCC	2 cut(s)	271, 941
ApaLI	GTGCAC	1 cut(s)	505
ApeKI	GCWGC	3 cut(s)	586, 826, 906
ApoI	RAATTY	3 cut(s)	777, 1082, 1108
AspS9I	GGNCC	2 cut(s)	271, 564
AsuHPI	GGTGA	2 cut(s)	440, 620
AvaII	GGWCC	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	321
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	573, 838, 918
BccI	CCATC	4 cut(s)	419, 635, 827, 986
BclI	TGATCA	2 cut(s)	769, 1024
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	74, 458
BfmI	CTRYAG	1 cut(s)	1121
BisI	GCNGC	4 cut(s)	587, 637, 827, 907
BlsI	GCNGC	4 cut(s)	588, 638, 828, 908
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	2 cut(s)	271, 564
BmiI	GGNNCC	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	457, 663
BmuI	ACTGGG	1 cut(s)	244
BoxI	GACNNNNGTC	1 cut(s)	1008
BpiI	GAAGAC	1 cut(s)	885
BpmI	CTGGAG	1 cut(s)	807
Bsc4I	CCNNNNNNNGG	2 cut(s)	573, 965
Bse1I	ACTGG	7 cut(s)	79, 172, 212, 239, 514, 674, 951
BseGI	GGATG	3 cut(s)	333, 678, 1081
BseLI	CCNNNNNNNGG	2 cut(s)	573, 965
BseMII	CTCAG	2 cut(s)	368, 551
BseNI	ACTGG	7 cut(s)	79, 172, 212, 239, 514, 674, 951
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	3 cut(s)	573, 838, 918
BshFI	GGCC	2 cut(s)	273, 943
BsiHKAI	GWGCWC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	312, 408
BslI	CCNNNNNNNGG	2 cut(s)	573, 965
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	312, 408
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	273, 943
Bsp1286I	GDGCHC	2 cut(s)	321, 509
Bsp143I	GATC	7 cut(s)	13, 418, 512, 709, 718, 769, 1024
BspACI	CCGC	1 cut(s)	636
BspANI	GGCC	2 cut(s)	273, 943
BspCNI	CTCAG	2 cut(s)	369, 552
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	3 cut(s)	21, 426, 520
BsrI	ACTGG	7 cut(s)	79, 172, 212, 239, 514, 674, 951
BssMI	GATC	7 cut(s)	13, 418, 512, 709, 718, 769, 1024
BssNAI	GTATAC	1 cut(s)	1101
Bst1107I	GTATAC	1 cut(s)	1101
Bst4CI	ACNGT	5 cut(s)	60, 158, 557, 733, 1122
Bst6I	CTCTTC	1 cut(s)	543
BstAPI	GCANNNNNTGC	1 cut(s)	702
BstC8I	GCNNGC	4 cut(s)	51, 678, 698, 738
BstDEI	CTNAG	3 cut(s)	377, 471, 560
BstF5I	GGATG	3 cut(s)	333, 678, 1081
BstKTI	GATC	7 cut(s)	16, 421, 515, 712, 721, 772, 1027
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	7 cut(s)	13, 418, 512, 709, 718, 769, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 642, 702
BstNSI	RCATGY	2 cut(s)	53, 700
BstPAI	GACNNNNGTC	1 cut(s)	1008
BstSFI	CTRYAG	1 cut(s)	1121
BstSLI	GKGCMC	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	573, 838, 918
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BstZ17I	GTATAC	1 cut(s)	1101
BsuRI	GGCC	2 cut(s)	273, 943
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	3 cut(s)	333, 678, 1081
BtsI	GCAGTG	1 cut(s)	896
BtsIMutI	CAGTG	7 cut(s)	163, 319, 507, 590, 738, 896, 944
Cac8I	GCNNGC	4 cut(s)	51, 678, 698, 738
CaiI	CAGNNNCTG	1 cut(s)	1120
Cfr13I	GGNCC	2 cut(s)	271, 564
Csp6I	GTAC	3 cut(s)	553, 667, 996
CspCI	CAANNNNNGTGG	4 cut(s)	872, 907, 1023, 1058
CviAII	CATG	3 cut(s)	50, 697, 1070
CviQI	GTAC	3 cut(s)	553, 667, 996
DdeI	CTNAG	3 cut(s)	377, 471, 560
DpnI	GATC	7 cut(s)	15, 420, 514, 711, 720, 771, 1026
DpnII	GATC	7 cut(s)	13, 418, 512, 709, 718, 769, 1024
DraI	TTTAAA	1 cut(s)	336
DraIII	CACNNNGTG	1 cut(s)	608
EaeI	YGGCCR	1 cut(s)	941
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	321
Eco32I	GATATC	2 cut(s)	226, 971
Eco47I	GGWCC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	1082
EcoRV	GATATC	2 cut(s)	226, 971
EcoT22I	ATGCAT	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	3 cut(s)	53, 700, 1073
FaqI	GGGAC	2 cut(s)	312, 408
FatI	CATG	3 cut(s)	49, 696, 1069
FbaI	TGATCA	2 cut(s)	769, 1024
FblI	GTMKAC	1 cut(s)	1100
Fnu4HI	GCNGC	4 cut(s)	587, 637, 827, 907
FokI	GGATG	3 cut(s)	340, 685, 1088
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	4 cut(s)	587, 637, 827, 907
FspBI	CTAG	2 cut(s)	74, 458
GluI	GCNGC	4 cut(s)	587, 637, 827, 907
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	273, 943
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	3 cut(s)	53, 700, 1073
HinfI	GANTC	5 cut(s)	265, 300, 358, 529, 1009
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	440, 620
Hpy166II	GTNNAC	6 cut(s)	205, 507, 667, 856, 894, 1101
Hpy188I	TCNGA	3 cut(s)	372, 561, 765
Hpy188III	TCNNGA	5 cut(s)	217, 355, 422, 746, 1022
Hpy8I	GTNNAC	6 cut(s)	205, 507, 667, 856, 894, 1101
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	4 cut(s)	372, 407, 686, 926
HpyCH4III	ACNGT	5 cut(s)	60, 158, 557, 733, 1122
HpyCH4IV	ACGT	1 cut(s)	988
HpyCH4V	TGCA	9 cut(s)	39, 49, 96, 294, 507, 736, 906, 932, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 642, 702
HpyF3I	CTNAG	3 cut(s)	377, 471, 560
HpySE526I	ACGT	1 cut(s)	988
Hsp92II	CATG	3 cut(s)	53, 700, 1073
Ksp22I	TGATCA	2 cut(s)	769, 1024
Kzo9I	GATC	7 cut(s)	13, 418, 512, 709, 718, 769, 1024
Lsp1109I	GCAGC	3 cut(s)	573, 838, 918
LweI	GCATC	2 cut(s)	457, 663
MaeI	CTAG	2 cut(s)	74, 458
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	5 cut(s)	152, 384, 683, 801, 1116
MalI	GATC	7 cut(s)	15, 420, 514, 711, 720, 771, 1026
MboI	GATC	7 cut(s)	13, 418, 512, 709, 718, 769, 1024
MboII	GAAGA	3 cut(s)	422, 560, 890
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	2 cut(s)	321, 509
MluCI	AATT	5 cut(s)	114, 777, 981, 1082, 1108
MlyI	GAGTC	2 cut(s)	294, 1018
MnlI	CCTC	7 cut(s)	372, 555, 762, 816, 868, 994, 1066
Mph1103I	ATGCAT	1 cut(s)	41
MseI	TTAA	2 cut(s)	335, 495
MslI	CAYNNNNRTG	1 cut(s)	1074
MspI	CCGG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	16, 642, 702
NdeII	GATC	7 cut(s)	13, 418, 512, 709, 718, 769, 1024
NlaIII	CATG	3 cut(s)	53, 700, 1073
NlaIV	GGNNCC	1 cut(s)	272
NmeAIII	GCCGAG	2 cut(s)	45, 919
NmuCI	GTSAC	2 cut(s)	152, 801
NsiI	ATGCAT	1 cut(s)	41
NspI	RCATGY	2 cut(s)	53, 700
PaeI	GCATGC	2 cut(s)	53, 700
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	265, 358, 529
PflMI	CCANNNNNTGG	2 cut(s)	573, 965
PkrI	GCNGC	4 cut(s)	588, 638, 828, 908
PleI	GAGTC	2 cut(s)	294, 1017
PpsI	GAGTC	2 cut(s)	294, 1017
PshAI	GACNNNNGTC	1 cut(s)	1008
PsiI	TTATAA	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	271, 564
PstNI	CAGNNNCTG	1 cut(s)	1120
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	3 cut(s)	554, 668, 997
RsaNI	GTAC	3 cut(s)	553, 667, 996
RseI	CAYNNNNRTG	1 cut(s)	1074
SaqAI	TTAA	2 cut(s)	335, 495
SatI	GCNGC	4 cut(s)	587, 637, 827, 907
Sau3AI	GATC	7 cut(s)	13, 418, 512, 709, 718, 769, 1024
Sau96I	GGNCC	2 cut(s)	271, 564
SchI	GAGTC	2 cut(s)	294, 1018
SduI	GDGCHC	2 cut(s)	321, 509
SetI	ASST	9 cut(s)	506, 566, 584, 623, 918, 967, 991, 1033, 1051
SfaNI	GCATC	2 cut(s)	457, 663
SfcI	CTRYAG	1 cut(s)	1121
SinI	GGWCC	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	1074
SphI	GCATGC	2 cut(s)	53, 700
Sse9I	AATT	5 cut(s)	114, 777, 981, 1082, 1108
SsiI	CCGC	1 cut(s)	636
SspMI	CTAG	2 cut(s)	74, 458
TaaI	ACNGT	5 cut(s)	60, 158, 557, 733, 1122
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	3 cut(s)	218, 515, 546
TasI	AATT	5 cut(s)	114, 777, 981, 1082, 1108
TatI	WGTACW	2 cut(s)	552, 666
TauI	GCSGC	1 cut(s)	639
TfiI	GAWTC	3 cut(s)	265, 358, 529
Tru1I	TTAA	2 cut(s)	335, 495
Tru9I	TTAA	2 cut(s)	335, 495
TscAI	CASTG	7 cut(s)	163, 319, 514, 597, 738, 896, 951
TseFI	GTSAC	2 cut(s)	152, 801
TseI	GCWGC	3 cut(s)	586, 826, 906
Tsp45I	GTSAC	2 cut(s)	152, 801
TspDTI	ATGAA	8 cut(s)	162, 542, 555, 630, 705, 782, 798, 1095
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	7 cut(s)	163, 319, 514, 597, 738, 896, 951
Van91I	CCANNNNNTGG	2 cut(s)	573, 965
VneI	GTGCAC	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	564
XapI	RAATTY	3 cut(s)	777, 1082, 1108
XceI	RCATGY	2 cut(s)	53, 700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	1100
XspI	CTAG	2 cut(s)	74, 458
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.