Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001983.1

Orthogroup ID

OG0019482

Physical Location & Seq

Genomic Coordinates Reverse (-)

33101 .. 33774

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgttccggagctggccgagctcatcaatgacaaagacactttttcagtgtagtctgtgcgctgtgtattctgaattaaagtgttttcttgtatatgatgtgcagctgggtaatcctgaaacctcagatgctgaggattggagaggtatagtggattatgcttggagtcatgctgtgatatcagacgaaactcacaaagtaatacgcgaaaactgtgattttgatggtgatacttggagtaagaagatcagtgctcaagctgtggatgaagtactaaaacaatacaaggagatagacatttacagcctttatacctcagtctgcatcggtgatacagcaagttcaaatgatggttcgatgcaagtaatgatgatgaagcatacatctacaatgatgccaaggattatgggtggctatgatccgtgtctggatgattattcaagaaaattctataacagagcagatgtgcaagaggccctccatgttagtaatggtccccagctcaagaactggagcatctgcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

175

Amino Acids

20.01

Weight (kDa)

5.0

Isoelectric Point (pI)

22.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	35 - 174	2.6e-19	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019482)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018126 RLG00000030195 RLG00000036236
rosa_multiflora	Rmu_sc0001983.1_g000005 Rmu_sc0008232.1_g000007 Rmu_sc0012304.1_g000002 Rmu_sc0015959.1_g000010
rosa_samantha	Rh7BG155800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	513
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	6
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	446
AfaI	GTAC	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	345, 441
AluBI	AGCT	5 cut(s)	12, 21, 106, 260, 502
AluI	AGCT	5 cut(s)	12, 21, 106, 260, 502
Alw21I	GWGCWC	2 cut(s)	23, 256
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	131
Aor13HI	TCCGGA	1 cut(s)	6
AoxI	GGCC	2 cut(s)	14, 474
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	475, 494
AsuHPI	GGTGA	2 cut(s)	239, 341
AvaII	GGWCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	23
Bbv12I	GWGCWC	2 cut(s)	23, 256
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	2 cut(s)	218, 344
BfmI	CTRYAG	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	513
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
BmcAI	AGTACT	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	475, 494
BmiI	GGNNCC	1 cut(s)	496
BmsI	GCATC	4 cut(s)	118, 333, 348, 384
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	2 cut(s)	240, 488
BsaJI	CCNNGG	1 cut(s)	398
BsaWI	WCCGGW	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	515
BseAI	TCCGGA	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	271, 436
BseMII	CTCAG	3 cut(s)	123, 138, 330
BseNI	ACTGG	1 cut(s)	515
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	106, 498
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	16, 476
BsiHKAI	GWGCWC	2 cut(s)	23, 256
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	16, 476
Bsp1286I	GDGCHC	2 cut(s)	23, 256
Bsp13I	TCCGGA	1 cut(s)	6
Bsp143I	GATC	2 cut(s)	246, 418
BspANI	GGCC	2 cut(s)	16, 476
BspCNI	CTCAG	3 cut(s)	124, 137, 329
BspEI	TCCGGA	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	496
BspMAI	CTGCAG	1 cut(s)	524
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	2 cut(s)	246, 418
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	124, 132, 316
BstF5I	GGATG	2 cut(s)	271, 436
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	249, 421
BstMBI	GATC	2 cut(s)	246, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	520
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	16, 476
BtsCI	GGATG	2 cut(s)	271, 436
BtsIMutI	CAGTG	2 cut(s)	53, 256
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	14
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	475, 494
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	170, 482
CviJI	RGCY	9 cut(s)	12, 16, 21, 106, 260, 306, 414, 476, 502
CviKI_1	RGCY	9 cut(s)	12, 16, 21, 106, 260, 306, 414, 476, 502
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	3 cut(s)	124, 132, 316
DpnI	GATC	2 cut(s)	248, 420
DpnII	GATC	2 cut(s)	246, 418
EaeI	YGGCCR	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	2 cut(s)	173, 485
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	2 cut(s)	169, 481
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	2 cut(s)	278, 443
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	104
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	104
GsaI	CCCAGC	2 cut(s)	110, 502
HaeIII	GGCC	2 cut(s)	16, 476
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	173, 485
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	2 cut(s)	239, 341
Hpy188I	TCNGA	3 cut(s)	73, 127, 184
Hpy188III	TCNNGA	5 cut(s)	7, 116, 428, 441, 505
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	5 cut(s)	103, 324, 361, 469, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	3 cut(s)	124, 132, 316
Hsp92II	CATG	2 cut(s)	173, 485
HspAI	GCGC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	246, 418
LmnI	GCTCC	2 cut(s)	9, 513
LpnPI	CCDG	7 cut(s)	20, 92, 129, 413, 496, 508, 512
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	4 cut(s)	118, 333, 348, 384
MalI	GATC	2 cut(s)	248, 420
MboI	GATC	2 cut(s)	246, 418
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	23, 256
MluCI	AATT	2 cut(s)	74, 446
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	6 cut(s)	127, 133, 137, 325, 466, 488
MroI	TCCGGA	1 cut(s)	6
MseI	TTAA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	18
NdeII	GATC	2 cut(s)	246, 418
NlaIII	CATG	2 cut(s)	173, 485
NlaIV	GGNNCC	1 cut(s)	496
NmeAIII	GCCGAG	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	105
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	23
PspFI	CCCAGC	2 cut(s)	106, 498
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	2 cut(s)	475, 494
PstI	CTGCAG	1 cut(s)	524
PstNI	CAGNNNCTG	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	2 cut(s)	246, 418
Sau96I	GGNCC	2 cut(s)	475, 494
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	1 cut(s)	175
SduI	GDGCHC	2 cut(s)	23, 256
SetI	ASST	9 cut(s)	14, 23, 108, 125, 148, 262, 317, 504, 527
SfaNI	GCATC	4 cut(s)	118, 333, 348, 384
SfcI	CTRYAG	1 cut(s)	520
SinI	GGWCC	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	255, 503
SmoI	CTYRAG	2 cut(s)	255, 503
Sse9I	AATT	2 cut(s)	74, 446
SstI	GAGCTC	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	356
TasI	AATT	2 cut(s)	74, 446
TatI	WGTACW	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	2 cut(s)	53, 256
TseI	GCWGC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	282, 389
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	2 cut(s)	53, 256
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.