Rmu_sc0002004.1_g000001

Cell division cycle

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002004.1
Physical Location & Seq
Forward (+)
9221 .. 11703
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002004.1_g000001.1.cds

Sequence Viewer

Length: 1446 bp
atgtgggaagttcaatcggattggtactccccaactcgcatgaacagcagcccaaatacccagtacgaatttccgggtgatcggtttatacccaataggagtttgatggatcttgatcaagcccagagcttattgacgaacagaactgtaccgaatcggaactcgaatttcaatgaggcatacagacagaaattgcaggaccaactgaatttggattcagatgggaaccctttcaagatgttggtttttaggggaagcccaaaatctagtagaaaaccgcttctttgtgttgatgagatgcgccggagtgatgaatttgatagtaatatgatcaaacctactcagcttcgaagtttgcctaaggataactcaaagaagctgcagtttgagacaattgtgatagtgttgtatgcttggtgcataatgttagattctattttcggacttgaaggagaaagtagagttctggatgcaccaaacatgagaaatgacttttacatgaacatcatggactggggaaagaacaatgttcttgcagttgctctgggcctcgatttatacctctggaactcggagacagtaaatgtacgtaagctgtttcatgtcaatgagaatgatcaccccacaagtttagcttggtctcaagatgccaaatatttggcagttggatataagggctcgaaactccaactctgggatgctgaggcttccaagctggttagaagcctaaaaggccataatcgcagggtagcgaccattacttggaatggtcacacattaacatcaggcagccgagaccggtccattattaaccatgatgtcagagcaagaaacaatgtgacttgccatttacgtgcacactctcaagaagtctgtggcttgaaatggtcggaaacaggcaatttattggcaagcggtggcaatgaaaacctcttgtacatttgggaatcctcgagaatgaactcatcgaaatacttgtattgtttcaaagaccattgtgctgcagtcaaggcgctagcttggtgtccttatcagtctggtgtacttgcctctggaggaggcacagaagatgggtgtattaagttatggaatacacaaatggggacctgtatcaacaccattgataccaactctcaagtctgtgggttggagtggaacaggcatcacaaagagatactgagtggccatggttatagtccgagcgagcaaatcaagaatcagctatgcctctggaggtatccttccatggaaaaagtggggaacttgaagcgccacacctccagagtccttcagctttctcagagccctgatgggttaactttagtatcagctgttgcagacgggactcttcggttttggaacatctttggacccccatgtgctgacaattcaaggctctcagctctggacagttttttgtctaataagacttctccaataagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

54.63

Weight (kDa)

8.72

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 762
AciI CCGC 2 cut(s) 278, 915
AclWI GGATC 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 1183
AcsI RAATTY 4 cut(s) 68, 166, 208, 314
AcuI CTGAAG 1 cut(s) 1274
AfaI GTAC 6 cut(s) 26, 65, 150, 588, 938, 1044
AfiI CCNNNNNNNGG 2 cut(s) 694, 762
AgeI ACCGGT 1 cut(s) 798
AgsI TTSAA 8 cut(s) 14, 172, 235, 449, 883, 988, 1267, 1392
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 4 cut(s) 383, 569, 645, 789
Alw44I GTGCAC 1 cut(s) 855
AlwI GGATC 1 cut(s) 117
Ama87I CYCGRG 1 cut(s) 952
AoxI GGCC 3 cut(s) 547, 733, 1183
ApaLI GTGCAC 1 cut(s) 855
ApeKI GCWGC 4 cut(s) 48, 379, 789, 1001
ApoI RAATTY 4 cut(s) 68, 166, 208, 314
AsiGI ACCGGT 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 3 cut(s) 303, 1015, 1272
AspS9I GGNCC 5 cut(s) 199, 547, 801, 1104, 1370
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 89, 611
AsuII TTCGAA 1 cut(s) 349
AsuNHI GCTAGC 1 cut(s) 1015
AvaI CYCGRG 1 cut(s) 952
AvaII GGWCC 4 cut(s) 199, 801, 1104, 1370
AxyI CCTNAGG 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 859
BaeI ACNNNNGTAYC 2 cut(s) 1308, 1341
BalI TGGCCA 1 cut(s) 1185
BanII GRGCYC 2 cut(s) 680, 1307
Bbv12I GWGCWC 1 cut(s) 859
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 4 cut(s) 60, 366, 801, 988
BccI CCATC 4 cut(s) 100, 215, 1064, 1304
BciVI GTATCC 1 cut(s) 1248
BclI TGATCA 3 cut(s) 115, 330, 616
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 4 cut(s) 383, 569, 645, 789
BfaI CTAG 2 cut(s) 267, 1016
BfmI CTRYAG 2 cut(s) 380, 1002
BfoI RGCGCY 2 cut(s) 1016, 1273
BfuI GTATCC 1 cut(s) 1248
BglI GCCNNNNNGGC 1 cut(s) 732
BisI GCNGC 4 cut(s) 49, 380, 790, 1002
BlsI GCNGC 4 cut(s) 50, 381, 791, 1003
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 4 cut(s) 199, 801, 1104, 1370
BmeT110I CYCGRG 1 cut(s) 952
BmgT120I GGNCC 5 cut(s) 199, 547, 801, 1104, 1370
BmiI GGNNCC 3 cut(s) 227, 1105, 1372
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 2 cut(s) 55, 523
BmsI GCATC 5 cut(s) 288, 460, 637, 688, 1171
BmtI GCTAGC 1 cut(s) 1019
BmuI ACTGGG 2 cut(s) 55, 523
BpmI CTGGAG 3 cut(s) 1074, 1252, 1264
Bpu10I CCTNAGC 1 cut(s) 702
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 3 cut(s) 627, 849, 1119
BpuMI CCSGG 1 cut(s) 75
BsaAI YACGTR 2 cut(s) 590, 854
BsaBI GATNNNNATC 1 cut(s) 114
BsaI GGTCTC 2 cut(s) 645, 789
BsaJI CCNNGG 2 cut(s) 1186, 1245
BsaWI WCCGGW 1 cut(s) 798
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 762
Bse118I RCCGGY 1 cut(s) 798
Bse1I ACTGG 2 cut(s) 61, 518
Bse21I CCTNAGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 928
Bse8I GATNNNNATC 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 1186, 1245
BseGI GGATG 2 cut(s) 475, 703
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 694, 762
BseMI GCAATG 1 cut(s) 928
BseMII CTCAG 5 cut(s) 356, 693, 1169, 1313, 1413
BseNI ACTGG 2 cut(s) 61, 518
BseRI GAGGAG 1 cut(s) 1071
BseSI GKGCMC 1 cut(s) 859
BseXI GCAGC 4 cut(s) 60, 366, 801, 988
BshFI GGCC 3 cut(s) 549, 735, 1185
BshTI ACCGGT 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 859
BsiHKCI CYCGRG 1 cut(s) 952
BsiSI CCGG 3 cut(s) 74, 304, 799
BslFI GGGAC 2 cut(s) 1117, 1357
BslI CCNNNNNNNGG 2 cut(s) 694, 762
BsmAI GTCTC 4 cut(s) 383, 569, 645, 789
BsmFI GGGAC 2 cut(s) 1117, 1357
BsnI GGCC 3 cut(s) 549, 735, 1185
Bso31I GGTCTC 2 cut(s) 645, 789
BsoBI CYCGRG 1 cut(s) 952
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 3 cut(s) 680, 859, 1307
Bsp1407I TGTACA 1 cut(s) 936
Bsp143I GATC 5 cut(s) 79, 109, 115, 330, 616
Bsp19I CCATGG 2 cut(s) 1186, 1245
BspACI CCGC 2 cut(s) 278, 915
BspANI GGCC 3 cut(s) 549, 735, 1185
BspCNI CTCAG 5 cut(s) 355, 694, 1170, 1312, 1412
BspLI GGNNCC 3 cut(s) 227, 1105, 1372
BspMAI CTGCAG 2 cut(s) 384, 1006
BspOI GCTAGC 1 cut(s) 1019
BspPI GGATC 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 349
BspTNI GGTCTC 2 cut(s) 645, 789
BsrDI GCAATG 1 cut(s) 928
BsrFI RCCGGY 1 cut(s) 798
BsrGI TGTACA 1 cut(s) 936
BsrI ACTGG 2 cut(s) 61, 518
BssAI RCCGGY 1 cut(s) 798
BssECI CCNNGG 2 cut(s) 1186, 1245
BssMI GATC 5 cut(s) 79, 109, 115, 330, 616
BssT1I CCWWGG 2 cut(s) 1186, 1245
Bst4CI ACNGT 3 cut(s) 148, 580, 1412
Bst6I CTCTTC 1 cut(s) 1353
BstAUI TGTACA 1 cut(s) 936
BstBAI YACGTR 2 cut(s) 590, 854
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 3 cut(s) 913, 1017, 1205
BstDEI CTNAG 6 cut(s) 342, 360, 702, 1178, 1299, 1399
BstDSI CCRYGG 2 cut(s) 1186, 1245
BstF5I GGATG 2 cut(s) 475, 703
BstH2I RGCGCY 2 cut(s) 1016, 1273
BstHHI GCGC 3 cut(s) 303, 1015, 1272
BstKTI GATC 5 cut(s) 82, 112, 118, 333, 619
BstMAI GTCTC 4 cut(s) 383, 569, 645, 789
BstMBI GATC 5 cut(s) 79, 109, 115, 330, 616
BstMWI GCNNNNNNNGC 4 cut(s) 45, 732, 741, 1010
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 2 cut(s) 380, 1002
BstSLI GKGCMC 1 cut(s) 859
BstSNI TACGTA 1 cut(s) 590
BstV1I GCAGC 4 cut(s) 60, 366, 801, 988
BstX2I RGATCY 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 658
BstYI RGATCY 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 360
BsuI GTATCC 1 cut(s) 1248
BsuRI GGCC 3 cut(s) 549, 735, 1185
BtgI CCRYGG 2 cut(s) 1186, 1245
BtsCI GGATG 2 cut(s) 475, 703
Cac8I GCNNGC 3 cut(s) 913, 1017, 1205
CfoI GCGC 3 cut(s) 303, 1015, 1272
Cfr10I RCCGGY 1 cut(s) 798
Cfr13I GGNCC 5 cut(s) 199, 547, 801, 1104, 1370
Csp6I GTAC 6 cut(s) 25, 64, 149, 587, 937, 1043
CspAI ACCGGT 1 cut(s) 798
CviAII CATG 9 cut(s) 40, 481, 499, 508, 602, 815, 1187, 1246, 1377
CviQI GTAC 6 cut(s) 25, 64, 149, 587, 937, 1043
DdeI CTNAG 6 cut(s) 342, 360, 702, 1178, 1299, 1399
DpnI GATC 5 cut(s) 81, 111, 117, 332, 618
DpnII GATC 5 cut(s) 79, 109, 115, 330, 616
EaeI YGGCCR 1 cut(s) 1183
Eam1104I CTCTTC 1 cut(s) 1353
EarI CTCTTC 1 cut(s) 1353
Eco105I TACGTA 1 cut(s) 590
Eco130I CCWWGG 2 cut(s) 1186, 1245
Eco24I GRGCYC 2 cut(s) 680, 1307
Eco31I GGTCTC 2 cut(s) 645, 789
Eco47I GGWCC 4 cut(s) 199, 801, 1104, 1370
Eco57I CTGAAG 1 cut(s) 1274
Eco81I CCTNAGG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 952
EcoO109I RGGNCCY 1 cut(s) 1104
EcoT14I CCWWGG 2 cut(s) 1186, 1245
EcoT38I GRGCYC 2 cut(s) 680, 1307
ErhI CCWWGG 2 cut(s) 1186, 1245
FaeI CATG 9 cut(s) 43, 484, 502, 511, 605, 818, 1190, 1249, 1380
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FaqI GGGAC 2 cut(s) 1117, 1357
FatI CATG 9 cut(s) 39, 480, 498, 507, 601, 814, 1186, 1245, 1376
FbaI TGATCA 3 cut(s) 115, 330, 616
Fnu4HI GCNGC 4 cut(s) 49, 380, 790, 1002
FokI GGATG 2 cut(s) 482, 710
FriOI GRGCYC 2 cut(s) 680, 1307
Fsp4HI GCNGC 4 cut(s) 49, 380, 790, 1002
FspBI CTAG 2 cut(s) 267, 1016
GlaI GCGC 3 cut(s) 302, 1014, 1271
GluI GCNGC 4 cut(s) 49, 380, 790, 1002
GsuI CTGGAG 3 cut(s) 1074, 1252, 1264
HaeII RGCGCY 2 cut(s) 1016, 1273
HaeIII GGCC 3 cut(s) 549, 735, 1185
HapII CCGG 3 cut(s) 74, 304, 799
HhaI GCGC 3 cut(s) 303, 1015, 1272
Hin1II CATG 9 cut(s) 43, 484, 502, 511, 605, 818, 1190, 1249, 1380
Hin6I GCGC 3 cut(s) 301, 1013, 1270
HinP1I GCGC 3 cut(s) 301, 1013, 1270
HincII GTYRAC 1 cut(s) 1317
HindII GTYRAC 1 cut(s) 1317
HinfI GANTC 7 cut(s) 154, 215, 431, 947, 1216, 1284, 1345
HpaI GTTAAC 1 cut(s) 1317
HpaII CCGG 3 cut(s) 74, 304, 799
HphI GGTGA 2 cut(s) 89, 611
Hpy166II GTNNAC 3 cut(s) 857, 1043, 1317
Hpy188I TCNGA 9 cut(s) 19, 159, 220, 443, 574, 824, 892, 1200, 1302
Hpy8I GTNNAC 3 cut(s) 857, 1043, 1317
HpyAV CCTTC 3 cut(s) 443, 1251, 1298
HpyCH4III ACNGT 3 cut(s) 148, 580, 1412
HpyCH4IV ACGT 2 cut(s) 589, 853
HpyCH4V TGCA 8 cut(s) 196, 382, 420, 473, 536, 857, 1004, 1337
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 732, 741, 1010
HpyF3I CTNAG 6 cut(s) 342, 360, 702, 1178, 1299, 1399
HpySE526I ACGT 2 cut(s) 589, 853
Hsp92II CATG 9 cut(s) 43, 484, 502, 511, 605, 818, 1190, 1249, 1380
HspAI GCGC 3 cut(s) 301, 1013, 1270
Ksp22I TGATCA 3 cut(s) 115, 330, 616
KspAI GTTAAC 1 cut(s) 1317
Kzo9I GATC 5 cut(s) 79, 109, 115, 330, 616
Lsp1109I GCAGC 4 cut(s) 60, 366, 801, 988
LweI GCATC 5 cut(s) 288, 460, 637, 688, 1171
MaeI CTAG 2 cut(s) 267, 1016
MaeII ACGT 2 cut(s) 589, 853
MaeIII GTNAC 2 cut(s) 770, 838
MalI GATC 5 cut(s) 81, 111, 117, 332, 618
MboI GATC 5 cut(s) 79, 109, 115, 330, 616
MboII GAAGA 2 cut(s) 1079, 1340
MfeI CAATTG 1 cut(s) 393
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 3 cut(s) 680, 859, 1307
MlsI TGGCCA 1 cut(s) 1185
MluCI AATT 8 cut(s) 68, 166, 191, 208, 314, 393, 901, 1387
MluNI TGGCCA 1 cut(s) 1185
MlyI GAGTC 2 cut(s) 1293, 1339
MmeI TCCRAC 4 cut(s) 646, 712, 870, 1128
Mox20I TGGCCA 1 cut(s) 1185
MroXI GAANNNNTTC 1 cut(s) 230
MscI TGGCCA 1 cut(s) 1185
MseI TTAA 4 cut(s) 779, 810, 1080, 1316
MslI CAYNNNNRTG 2 cut(s) 606, 852
Msp20I TGGCCA 1 cut(s) 1185
MspA1I CMGCKG 1 cut(s) 1331
MspI CCGG 3 cut(s) 74, 304, 799
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 393
MwoI GCNNNNNNNGC 4 cut(s) 45, 732, 741, 1010
NciI CCSGG 1 cut(s) 75
NcoI CCATGG 2 cut(s) 1186, 1245
NdeII GATC 5 cut(s) 79, 109, 115, 330, 616
NheI GCTAGC 1 cut(s) 1015
NlaIII CATG 9 cut(s) 43, 484, 502, 511, 605, 818, 1190, 1249, 1380
NlaIV GGNNCC 3 cut(s) 227, 1105, 1372
NmeAIII GCCGAG 1 cut(s) 818
NmuCI GTSAC 2 cut(s) 770, 838
NspV TTCGAA 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 5 cut(s) 154, 215, 431, 947, 1216
PflMI CCANNNNNTGG 1 cut(s) 762
PinAI ACCGGT 1 cut(s) 798
PkrI GCNGC 4 cut(s) 50, 381, 791, 1003
PleI GAGTC 2 cut(s) 1292, 1339
PpsI GAGTC 2 cut(s) 1292, 1339
Ppu21I YACGTR 2 cut(s) 590, 854
PpuMI RGGWCCY 1 cut(s) 1104
Psp5II RGGWCCY 1 cut(s) 1104
PspN4I GGNNCC 3 cut(s) 227, 1105, 1372
PspPI GGNCC 5 cut(s) 199, 547, 801, 1104, 1370
PspPPI RGGWCCY 1 cut(s) 1104
PstI CTGCAG 2 cut(s) 384, 1006
PsuI RGATCY 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 6 cut(s) 26, 65, 150, 588, 938, 1044
RsaNI GTAC 6 cut(s) 25, 64, 149, 587, 937, 1043
RseI CAYNNNNRTG 2 cut(s) 606, 852
SaqAI TTAA 4 cut(s) 779, 810, 1080, 1316
SatI GCNGC 4 cut(s) 49, 380, 790, 1002
Sau3AI GATC 5 cut(s) 79, 109, 115, 330, 616
Sau96I GGNCC 5 cut(s) 199, 547, 801, 1104, 1370
SchI GAGTC 2 cut(s) 1293, 1339
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 3 cut(s) 680, 859, 1307
SfaNI GCATC 5 cut(s) 288, 460, 637, 688, 1171
SfcI CTRYAG 2 cut(s) 380, 1002
Sfr274I CTCGAG 1 cut(s) 952
SfuI TTCGAA 1 cut(s) 349
SinI GGWCC 4 cut(s) 199, 801, 1104, 1370
SlaI CTCGAG 1 cut(s) 952
SmiMI CAYNNNNRTG 2 cut(s) 606, 852
SmlI CTYRAG 4 cut(s) 642, 864, 952, 1134
SmoI CTYRAG 4 cut(s) 642, 864, 952, 1134
SnaBI TACGTA 1 cut(s) 590
Sse9I AATT 8 cut(s) 68, 166, 191, 208, 314, 393, 901, 1387
SsiI CCGC 2 cut(s) 278, 915
SspI AATATT 1 cut(s) 656
SspMI CTAG 2 cut(s) 267, 1016
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 2 cut(s) 1186, 1245
TaaI ACNGT 3 cut(s) 148, 580, 1412
TaiI ACGT 2 cut(s) 592, 856
TaqI TCGA 6 cut(s) 164, 349, 552, 680, 953, 968
TasI AATT 8 cut(s) 68, 166, 191, 208, 314, 393, 901, 1387
TatI WGTACW 2 cut(s) 936, 1042
TfiI GAWTC 5 cut(s) 154, 215, 431, 947, 1216
Tru1I TTAA 4 cut(s) 779, 810, 1080, 1316
Tru9I TTAA 4 cut(s) 779, 810, 1080, 1316
TseFI GTSAC 2 cut(s) 770, 838
TseI GCWGC 4 cut(s) 48, 379, 789, 1001
Tsp45I GTSAC 2 cut(s) 770, 838
TspDTI ATGAA 6 cut(s) 56, 327, 515, 590, 939, 974
Van91I CCANNNNNTGG 1 cut(s) 762
VneI GTGCAC 1 cut(s) 855
VpaK11BI GGWCC 4 cut(s) 199, 801, 1104, 1370
XapI RAATTY 4 cut(s) 68, 166, 208, 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 1252
XhoI CTCGAG 1 cut(s) 952
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 2 cut(s) 267, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.