Rh1AG384800

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014805
Physical Location & Seq
Reverse (-)
61565769 .. 61569084
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG384800.1

Sequence Viewer

Length: 966 bp
ATGAGAAATGACTTTTACATGAACATCATGGACTGGGGAAAGAACAATGTTCTTGCAGTTGCTCTGGGCCTCGATTTATACCTCTGGAACTCGGAGACAGTAAATGTACGTAAGCTGTTTCATGTCAATGAGAATGATCACCCCACAAGTTTAGCTTGGTCTCAAGATGCCAAATATTTGGCAGTTGGATATAAGGGCTCGAAACTCCAACTCTGGGATGCTGAGGCTTCCAAGCTGGTTAGAAGCCTAAAAGGCCATAATCGCAGGGTAGCGACCATTACTTGGAATGGTCACACATTAACATCAGGCAGCCGAGACCGGTCCATTATTAACCATGATGTCAGAGCAAGAAACAATGTGACTTGCCATTTACGTGCACACTCTCAAGAAGTCTGTGGCTTGAAATGGTCGGAAACAGGCAATTTATTAGCAAGCGGTGGCAATGAAAACCTCTTGTACATTTGGGAATCCTCGAGAATGAACTCATCGAAATACTTGTATTGTTTCAAAGACCATTGTGCTGCAGTCAAGGCGCTTGCTTGGTGTCCTTATCAGTCTGGTGTACTTGCCTCTGGAGGAGGCACAGAAGATGGGTGTATTAAGTTATGGAATACACAAATGGGGACCTGTATCAACACCATTGATACCAACTCTCAAGTCTGTGGGTTGGAGTGGAACAGGCATCACAAAGAGATACTGAGTGGCCATGGTTATAGTCCGAGCGAGCAAATCAAGAATCAGCTATGCCTCTGGAGGTATCCTTCCATGGAAAAAGTGGGGAACTTGAAGCGCCACACCTCCAGAGTCCTTCAGCTTTCTCAGAGCCCTGATGGGTTAACTTTAGTATCAGCTGTTGCAGACGGGACTCTTCGGTTTTGGAATATCTTTGGACCCCCGTGTGCTGACAATTCAAGGCTCTCAGCTCTGGACAGTTTTTTGTCTAATAAGACTTCTCCAATAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

321

Amino Acids

36.03

Weight (kDa)

8.96

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 1 - 293 6.6e-116 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 7 - 97 8e-07 WDHD1 first WD40 domain
Beta-prop_WDR19_1st PF23389 10 - 128 3e-10 WDR19 first beta-propeller
WD40_Gbeta PF25391 15 - 204 5.3e-10 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 15 - 166 7.1e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_Aladin PF25460 18 - 173 1.5e-06 Aladin seven-bladed propeller
Beta-prop_WDR3_1st PF25173 19 - 118 2.7e-14 WDR3 first beta-propeller domain
Beta-prop_IFT140_1st PF23383 24 - 110 3.6e-06 IFT140 first beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 25 - 155 7.8e-08 WDR36/Utp21 first beta-propeller
Beta-prop_EML_2 PF23414 25 - 164 3.2e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 27 - 166 3.3e-20 WDR5 beta-propeller domain
ANAPC4_WD40 PF12894 35 - 96 8.8e-08 Anaphase-promoting complex subunit 4 WD40 domain
WD40_Prp19 PF24814 35 - 192 2.2e-15 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 49 - 120 8.6e-10 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 50 - 158 1.7e-08 WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 51 - 294 7.2e-09 MABP1/WDR62 second WD40 domain
WDR55 PF24796 93 - 235 1.1e-06 WDR55
WD40_Prp19 PF24814 98 - 295 6.3e-17 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 118 - 186 7e-06 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 118 - 236 1e-14 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 120 - 215 5.2e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 122 - 222 7.2e-07 TEP-1 second beta-propeller
Beta-prop_EML PF23409 123 - 234 3.2e-06 Echinoderm microtubule-associated protein first beta-propeller
EIF3I PF24805 124 - 233 1.6e-06 EIF3I
Beta-prop_WDR5 PF25175 124 - 295 6.8e-21 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 127 - 236 1e-18 THOC3 beta-propeller domain
WD40 PF00400 258 - 294 8e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AciI CCGC 1 cut(s) 435
AcoI YGGCCR 1 cut(s) 703
AcuI CTGAAG 1 cut(s) 794
AfaI GTAC 3 cut(s) 108, 458, 564
AfiI CCNNNNNNNGG 2 cut(s) 214, 282
AgeI ACCGGT 1 cut(s) 318
AgsI TTSAA 4 cut(s) 403, 508, 787, 912
AluBI AGCT 7 cut(s) 115, 155, 235, 742, 814, 851, 923
AluI AGCT 7 cut(s) 115, 155, 235, 742, 814, 851, 923
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 3 cut(s) 89, 165, 309
Alw44I GTGCAC 1 cut(s) 375
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 3 cut(s) 67, 253, 703
ApaLI GTGCAC 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 309, 521
AsiGI ACCGGT 1 cut(s) 318
AspLEI GCGC 2 cut(s) 535, 792
AspS9I GGNCC 4 cut(s) 67, 321, 624, 890
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 3 cut(s) 321, 624, 890
BaeGI GKGCMC 1 cut(s) 379
BaeI ACNNNNGTAYC 2 cut(s) 828, 861
BalI TGGCCA 1 cut(s) 705
BanII GRGCYC 2 cut(s) 200, 827
Bbv12I GWGCWC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 321, 508
BccI CCATC 2 cut(s) 584, 824
BciVI GTATCC 1 cut(s) 768
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 3 cut(s) 89, 165, 309
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 2 cut(s) 536, 793
BfuI GTATCC 1 cut(s) 768
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 2 cut(s) 310, 522
BlsI GCNGC 2 cut(s) 311, 523
Bme18I GGWCC 3 cut(s) 321, 624, 890
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 4 cut(s) 67, 321, 624, 890
BmiI GGNNCC 2 cut(s) 625, 892
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 3 cut(s) 157, 208, 691
BmuI ACTGGG 1 cut(s) 43
BpmI CTGGAG 3 cut(s) 594, 772, 784
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 3 cut(s) 147, 369, 639
BsaAI YACGTR 2 cut(s) 110, 374
BsaI GGTCTC 2 cut(s) 165, 309
BsaJI CCNNGG 2 cut(s) 706, 765
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 282
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 448
BseDI CCNNGG 2 cut(s) 706, 765
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 214, 282
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 4 cut(s) 213, 689, 833, 933
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 2 cut(s) 321, 508
BshFI GGCC 3 cut(s) 69, 255, 705
BshTI ACCGGT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 2 cut(s) 637, 877
BslI CCNNNNNNNGG 2 cut(s) 214, 282
BsmAI GTCTC 3 cut(s) 89, 165, 309
BsmFI GGGAC 2 cut(s) 637, 877
BsnI GGCC 3 cut(s) 69, 255, 705
Bso31I GGTCTC 2 cut(s) 165, 309
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 3 cut(s) 200, 379, 827
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 1 cut(s) 136
Bsp19I CCATGG 2 cut(s) 706, 765
BspACI CCGC 1 cut(s) 435
BspANI GGCC 3 cut(s) 69, 255, 705
BspCNI CTCAG 4 cut(s) 214, 690, 832, 932
BspLI GGNNCC 2 cut(s) 625, 892
BspMAI CTGCAG 1 cut(s) 526
BspTNI GGTCTC 2 cut(s) 165, 309
BsrDI GCAATG 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 318
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 706, 765
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 2 cut(s) 706, 765
Bst4CI ACNGT 2 cut(s) 100, 932
Bst6I CTCTTC 1 cut(s) 873
BstAUI TGTACA 1 cut(s) 456
BstBAI YACGTR 2 cut(s) 110, 374
BstC8I GCNNGC 3 cut(s) 433, 537, 725
BstDEI CTNAG 4 cut(s) 222, 698, 819, 919
BstDSI CCRYGG 2 cut(s) 706, 765
BstF5I GGATG 1 cut(s) 223
BstH2I RGCGCY 2 cut(s) 536, 793
BstHHI GCGC 2 cut(s) 535, 792
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 3 cut(s) 89, 165, 309
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 252, 261, 530
BstSFI CTRYAG 1 cut(s) 522
BstSLI GKGCMC 1 cut(s) 379
BstSNI TACGTA 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 321, 508
BstXI CCANNNNNNTGG 1 cut(s) 178
BsuI GTATCC 1 cut(s) 768
BsuRI GGCC 3 cut(s) 69, 255, 705
BtgI CCRYGG 2 cut(s) 706, 765
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 433, 537, 725
CfoI GCGC 2 cut(s) 535, 792
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 4 cut(s) 67, 321, 624, 890
Csp6I GTAC 3 cut(s) 107, 457, 563
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 6 cut(s) 19, 28, 122, 335, 707, 766
CviQI GTAC 3 cut(s) 107, 457, 563
DdeI CTNAG 4 cut(s) 222, 698, 819, 919
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 703
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Eco105I TACGTA 1 cut(s) 110
Eco130I CCWWGG 2 cut(s) 706, 765
Eco24I GRGCYC 2 cut(s) 200, 827
Eco31I GGTCTC 2 cut(s) 165, 309
Eco47I GGWCC 3 cut(s) 321, 624, 890
Eco57I CTGAAG 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 624
EcoT14I CCWWGG 2 cut(s) 706, 765
EcoT38I GRGCYC 2 cut(s) 200, 827
ErhI CCWWGG 2 cut(s) 706, 765
FaeI CATG 6 cut(s) 22, 31, 125, 338, 710, 769
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FaqI GGGAC 2 cut(s) 637, 877
FatI CATG 6 cut(s) 18, 27, 121, 334, 706, 765
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 310, 522
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 2 cut(s) 200, 827
Fsp4HI GCNGC 2 cut(s) 310, 522
GlaI GCGC 2 cut(s) 534, 791
GluI GCNGC 2 cut(s) 310, 522
GsuI CTGGAG 3 cut(s) 594, 772, 784
HaeII RGCGCY 2 cut(s) 536, 793
HaeIII GGCC 3 cut(s) 69, 255, 705
HapII CCGG 1 cut(s) 319
HhaI GCGC 2 cut(s) 535, 792
Hin1II CATG 6 cut(s) 22, 31, 125, 338, 710, 769
Hin6I GCGC 2 cut(s) 533, 790
HinP1I GCGC 2 cut(s) 533, 790
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HinfI GANTC 4 cut(s) 467, 736, 804, 865
HpaI GTTAAC 1 cut(s) 837
HpaII CCGG 1 cut(s) 319
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 3 cut(s) 377, 563, 837
Hpy188I TCNGA 5 cut(s) 94, 344, 412, 720, 822
Hpy188III TCNNGA 9 cut(s) 85, 164, 386, 474, 573, 733, 751, 801, 926
Hpy8I GTNNAC 3 cut(s) 377, 563, 837
HpyAV CCTTC 2 cut(s) 771, 818
HpyCH4III ACNGT 2 cut(s) 100, 932
HpyCH4IV ACGT 2 cut(s) 109, 373
HpyCH4V TGCA 4 cut(s) 56, 377, 524, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 261, 530
HpyF3I CTNAG 4 cut(s) 222, 698, 819, 919
HpySE526I ACGT 2 cut(s) 109, 373
Hsp92II CATG 6 cut(s) 22, 31, 125, 338, 710, 769
HspAI GCGC 2 cut(s) 533, 790
Ksp22I TGATCA 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 837
Kzo9I GATC 1 cut(s) 136
Lsp1109I GCAGC 2 cut(s) 321, 508
LweI GCATC 3 cut(s) 157, 208, 691
MaeII ACGT 2 cut(s) 109, 373
MaeIII GTNAC 2 cut(s) 290, 358
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 599, 860
MhlI GDGCHC 3 cut(s) 200, 379, 827
MlsI TGGCCA 1 cut(s) 705
MluCI AATT 2 cut(s) 421, 907
MluNI TGGCCA 1 cut(s) 705
MlyI GAGTC 2 cut(s) 813, 859
MmeI TCCRAC 4 cut(s) 166, 232, 390, 648
Mox20I TGGCCA 1 cut(s) 705
MscI TGGCCA 1 cut(s) 705
MseI TTAA 4 cut(s) 299, 330, 600, 836
MslI CAYNNNNRTG 2 cut(s) 126, 372
Msp20I TGGCCA 1 cut(s) 705
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 1 cut(s) 319
MwoI GCNNNNNNNGC 3 cut(s) 252, 261, 530
NcoI CCATGG 2 cut(s) 706, 765
NdeII GATC 1 cut(s) 136
NlaIII CATG 6 cut(s) 22, 31, 125, 338, 710, 769
NlaIV GGNNCC 2 cut(s) 625, 892
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 2 cut(s) 290, 358
PaeR7I CTCGAG 1 cut(s) 472
PfeI GAWTC 2 cut(s) 467, 736
PflMI CCANNNNNTGG 1 cut(s) 282
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 2 cut(s) 311, 523
PleI GAGTC 2 cut(s) 812, 859
PpsI GAGTC 2 cut(s) 812, 859
Ppu21I YACGTR 2 cut(s) 110, 374
PpuMI RGGWCCY 1 cut(s) 624
Psp5II RGGWCCY 1 cut(s) 624
PspN4I GGNNCC 2 cut(s) 625, 892
PspPI GGNCC 4 cut(s) 67, 321, 624, 890
PspPPI RGGWCCY 1 cut(s) 624
PstI CTGCAG 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 3 cut(s) 108, 458, 564
RsaNI GTAC 3 cut(s) 107, 457, 563
RseI CAYNNNNRTG 2 cut(s) 126, 372
SaqAI TTAA 4 cut(s) 299, 330, 600, 836
SatI GCNGC 2 cut(s) 310, 522
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 4 cut(s) 67, 321, 624, 890
SchI GAGTC 2 cut(s) 813, 859
SduI GDGCHC 3 cut(s) 200, 379, 827
SfaNI GCATC 3 cut(s) 157, 208, 691
SfcI CTRYAG 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 472
SinI GGWCC 3 cut(s) 321, 624, 890
SlaI CTCGAG 1 cut(s) 472
SmiMI CAYNNNNRTG 2 cut(s) 126, 372
SmlI CTYRAG 4 cut(s) 162, 384, 472, 654
SmoI CTYRAG 4 cut(s) 162, 384, 472, 654
SnaBI TACGTA 1 cut(s) 110
Sse9I AATT 2 cut(s) 421, 907
SsiI CCGC 1 cut(s) 435
SspI AATATT 1 cut(s) 176
StyI CCWWGG 2 cut(s) 706, 765
TaaI ACNGT 2 cut(s) 100, 932
TaiI ACGT 2 cut(s) 112, 376
TaqI TCGA 4 cut(s) 72, 200, 473, 488
TasI AATT 2 cut(s) 421, 907
TatI WGTACW 2 cut(s) 456, 562
TfiI GAWTC 2 cut(s) 467, 736
Tru1I TTAA 4 cut(s) 299, 330, 600, 836
Tru9I TTAA 4 cut(s) 299, 330, 600, 836
TseFI GTSAC 2 cut(s) 290, 358
TseI GCWGC 2 cut(s) 309, 521
Tsp45I GTSAC 2 cut(s) 290, 358
TspDTI ATGAA 4 cut(s) 35, 110, 459, 494
Van91I CCANNNNNTGG 1 cut(s) 282
VneI GTGCAC 1 cut(s) 375
VpaK11BI GGWCC 3 cut(s) 321, 624, 890
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XhoI CTCGAG 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.