Rmu_sc0002055.1_g000007

FabA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002055.1
OG0019042
Physical Location & Seq
Reverse (-)
23355 .. 24867
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002055.1_g000007.1.cds

Sequence Viewer

Length: 639 bp
atgactcacactaacacttctcatctatctagaatctctttaccgaaatctctgccgattcatttgacagctaaaaggaaatcaggtgctttcactgcttattgctccgccgccgacgcagcaaaagatcccatcaaggataaggatacccctattgaattgagatatgaagcatttcctactgtgatggatatccatgaaattcgtgaaagtttgcctcaccggtttccatttctgttggtggatagagtggttgaatatactcgtggaggattttcagctgtaggaatcaagaacattacgattaatgagaatttctttaatgggcatttccctggcaagccaattgttcctggtgttctagtgattgaggcgatggcaaagctcggtggcttgattctgttgcaaccagaactggcaggtccttgtgagagattctttttggttggaactgacaaagtgcggttcaggaaaccagttgttgctggtgacacattggtgatgagaatgactattgtcaagatgcagaaacgcttaggaatagcaaaatgtgaaggcaaggcatatgttggaggtgaacttgtatgcgaggctgactatttgttatatgttgataaggctgcaggtcaaaattgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
FabA

Protein Analysis

212

Amino Acids

23.39

Weight (kDa)

9.07

Isoelectric Point (pI)

21.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019042)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226301
rosa_laevigata RLG00000001753
rosa_multiflora Rmu_sc0002055.1_g000007
rosa_rugosa Rorug07G0236200
rosa_samantha Rh7AG383300 Rh7BG370200 Rh7CG402700 Rh7DG381600
rosa_wichuraiana Rw0G017530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 410, 614
AciI CCGC 3 cut(s) 108, 111, 463
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 2 cut(s) 201, 313
AgeI ACCGGT 1 cut(s) 222
AgsI TTSAA 2 cut(s) 158, 257
AjnI CCWGG 2 cut(s) 334, 352
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 3 cut(s) 71, 281, 385
AluI AGCT 3 cut(s) 71, 281, 385
AlwI GGATC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 119, 620
ApoI RAATTY 2 cut(s) 201, 313
AseI ATTAAT 1 cut(s) 306
AsiGI ACCGGT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 4 cut(s) 212, 500, 511, 587
AvaII GGWCC 1 cut(s) 422
BauI CACGAG 1 cut(s) 264
BbvI GCAGC 2 cut(s) 131, 607
BccI CCATC 3 cut(s) 140, 181, 370
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 2 cut(s) 336, 354
BciVI GTATCC 1 cut(s) 139
BfaI CTAG 2 cut(s) 30, 362
BfmI CTRYAG 2 cut(s) 282, 621
BfuAI ACCTGC 2 cut(s) 410, 614
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 3 cut(s) 111, 120, 621
BlsI GCNGC 3 cut(s) 112, 121, 622
Bme1390I CCNGG 2 cut(s) 336, 354
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 422
BmrFI CCNGG 2 cut(s) 336, 354
BmsI GCATC 1 cut(s) 513
BoxI GACNNNNGTC 1 cut(s) 515
Bpu10I CCTNAGC 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 334
BsaWI WCCGGW 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 420, 476
Bse8I GATNNNNATC 1 cut(s) 191
BseBI CCWGG 2 cut(s) 336, 354
BseDI CCNNGG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 191
BseNI ACTGG 2 cut(s) 420, 476
BseXI GCAGC 2 cut(s) 131, 607
BshTI ACCGGT 1 cut(s) 222
BsiSI CCGG 1 cut(s) 223
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 3 cut(s) 108, 111, 463
BspMAI CTGCAG 1 cut(s) 625
BspMI ACCTGC 2 cut(s) 410, 614
BspPI GGATC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 2 cut(s) 420, 476
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 336, 354
Bst4CI ACNGT 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 1 cut(s) 535
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 3 cut(s) 95, 116, 119
BstNI CCWGG 2 cut(s) 336, 354
BstPAI GACNNNNGTC 1 cut(s) 515
BstSCI CCNGG 2 cut(s) 334, 352
BstSFI CTRYAG 2 cut(s) 282, 621
BstV1I GCAGC 2 cut(s) 131, 607
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuI GTATCC 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 389
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 2 cut(s) 410, 614
Cac8I GCNNGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 1 cut(s) 125
CspAI ACCGGT 1 cut(s) 222
CviAII CATG 1 cut(s) 197
CviJI RGCY 7 cut(s) 71, 281, 343, 385, 393, 593, 620
CviKI_1 RGCY 7 cut(s) 71, 281, 343, 385, 393, 593, 620
DdeI CTNAG 1 cut(s) 535
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 97
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 334, 352
EcoRV GATATC 1 cut(s) 193
FaeI CATG 1 cut(s) 200
FaiI YATR 8 cut(s) 168, 198, 261, 565, 567, 586, 607, 609
FatI CATG 1 cut(s) 196
FauNDI CATATG 1 cut(s) 565
Fnu4HI GCNGC 3 cut(s) 111, 120, 621
Fsp4HI GCNGC 3 cut(s) 111, 120, 621
FspBI CTAG 2 cut(s) 30, 362
GluI GCNGC 3 cut(s) 111, 120, 621
HapII CCGG 1 cut(s) 223
HgaI GACGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 200
HinfI GANTC 6 cut(s) 4, 33, 58, 288, 397, 435
HpaII CCGG 1 cut(s) 223
HphI GGTGA 4 cut(s) 212, 500, 511, 587
Hpy166II GTNNAC 1 cut(s) 578
Hpy188III TCNNGA 5 cut(s) 30, 206, 292, 469, 520
Hpy8I GTNNAC 1 cut(s) 578
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 406, 526, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 116, 119
HpyF3I CTNAG 1 cut(s) 535
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 2 cut(s) 131, 607
LweI GCATC 1 cut(s) 513
MaeI CTAG 2 cut(s) 30, 362
MaeIII GTNAC 1 cut(s) 488
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 1 cut(s) 127
MluCI AATT 5 cut(s) 158, 201, 313, 345, 631
MmeI TCCRAC 2 cut(s) 427, 550
MnlI CCTC 5 cut(s) 228, 263, 364, 566, 583
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 2 cut(s) 306, 321
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 2 cut(s) 336, 354
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 2 cut(s) 336, 354
MwoI GCNNNNNNNGC 3 cut(s) 95, 116, 119
NdeI CATATG 1 cut(s) 565
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 488
OliI CACNNNNGTG 1 cut(s) 497
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 5 cut(s) 33, 58, 288, 397, 435
PinAI ACCGGT 1 cut(s) 222
PkrI GCNGC 3 cut(s) 112, 121, 622
PpuMI RGGWCCY 1 cut(s) 422
PshAI GACNNNNGTC 1 cut(s) 515
PshBI ATTAAT 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 334, 352
PspGI CCWGG 2 cut(s) 334, 352
PspPI GGNCC 1 cut(s) 422
PspPPI RGGWCCY 1 cut(s) 422
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 2 cut(s) 306, 321
SatI GCNGC 3 cut(s) 111, 120, 621
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 422
ScrFI CCNGG 2 cut(s) 336, 354
SetI ASST 7 cut(s) 73, 88, 283, 387, 424, 577, 628
SfaNI GCATC 1 cut(s) 513
SfcI CTRYAG 2 cut(s) 282, 621
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 497
Sse9I AATT 5 cut(s) 158, 201, 313, 345, 631
SsiI CCGC 3 cut(s) 108, 111, 463
SspMI CTAG 2 cut(s) 30, 362
StyD4I CCNGG 2 cut(s) 334, 352
TaaI ACNGT 1 cut(s) 184
TasI AATT 5 cut(s) 158, 201, 313, 345, 631
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 5 cut(s) 33, 58, 288, 397, 435
Tru1I TTAA 2 cut(s) 306, 321
Tru9I TTAA 2 cut(s) 306, 321
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 2 cut(s) 119, 620
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 50, 183, 213
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 422
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 2 cut(s) 201, 313
XbaI TCTAGA 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 2 cut(s) 30, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.