Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019042

Physical Location & Seq

Genomic Coordinates Reverse (-)

51438353 .. 51442230

Gene Structure 3878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG402700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCACAACTCACTTGCTAAAAGGAAATCAGGTGCTTTCACTGCTTATTGCTCCGCCGCCGACGCAGCAAAAGATCCCATCAAGGATAAGGATACCCCTATTGAATTGAGATATGAAGCATTTCCTACTGTGATGGATATCCATGAAATTCGTGAAAGTTTGCCTCACCGGTTTCCATTTCTGTTGGTGGATAGAGTGGTTGAATATACTCGTGGAGGATTTTCAGCTGTAGGAATCAAGAACATTACGATTAATGAGAATTTCTTTAATGGGCATTTCCCTGGCAAGCCAATTGTTCCTGGTGTTCTAGTGATTGAGGTATTAAGCTTTTTCCCTGACCGCTTTCATGACCTAGTTAGCTGTCACCCTTTAACCCCACCCCTTCACCAAAACGCACCTACGGCTAGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

FabA

Protein Analysis

137

Amino Acids

15.34

Weight (kDa)

7.06

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FabA	PF07977	54 - 106	3.9e-16	FabA-like domain
ApeI-like	PF22818	80 - 113	7.7e-08	ApeI dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019042)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0226301
rosa_laevigata	RLG00000001753
rosa_multiflora	Rmu_sc0002055.1_g000007
rosa_rugosa	Rorug07G0236200
rosa_samantha	Rh7AG383300 Rh7BG370200 Rh7CG402700 Rh7DG381600
rosa_wichuraiana	Rw0G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	54, 57, 340
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	147, 259
AgeI	ACCGGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	104, 203
AjnI	CCWGG	2 cut(s)	280, 298
AluBI	AGCT	3 cut(s)	227, 327, 360
AluI	AGCT	3 cut(s)	227, 327, 360
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	147, 259
AseI	ATTAAT	1 cut(s)	252
AsiGI	ACCGGT	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	120
AsuHPI	GGTGA	3 cut(s)	158, 356, 377
BauI	CACGAG	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	2 cut(s)	86, 127
BciT130I	CCWGG	2 cut(s)	282, 300
BciVI	GTATCC	1 cut(s)	85
BfaI	CTAG	3 cut(s)	308, 353, 405
BfmI	CTRYAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	57, 66
BlsI	GCNGC	2 cut(s)	58, 67
Bme1390I	CCNGG	2 cut(s)	282, 300
BmrFI	CCNGG	2 cut(s)	282, 300
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	282, 300
BseDI	CCNNGG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	409
BshTI	ACCGGT	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	169
BsnI	GGCC	1 cut(s)	409
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	3 cut(s)	54, 57, 340
BspANI	GGCC	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	346
BspPI	GGATC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	1 cut(s)	73
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	282, 300
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 62, 65, 401
BstNI	CCWGG	2 cut(s)	282, 300
BstSCI	CCNGG	2 cut(s)	280, 298
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	409
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	168
CseI	GACGC	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	168
CviAII	CATG	2 cut(s)	143, 347
CviJI	RGCY	6 cut(s)	227, 289, 327, 360, 404, 409
CviKI_1	RGCY	6 cut(s)	227, 289, 327, 360, 404, 409
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	409
Eco32I	GATATC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	280, 298
EcoRV	GATATC	1 cut(s)	139
FaeI	CATG	2 cut(s)	146, 350
FaiI	YATR	4 cut(s)	114, 144, 207, 348
FatI	CATG	2 cut(s)	142, 346
Fnu4HI	GCNGC	2 cut(s)	57, 66
Fsp4HI	GCNGC	2 cut(s)	57, 66
FspBI	CTAG	3 cut(s)	308, 353, 405
GluI	GCNGC	2 cut(s)	57, 66
HaeIII	GGCC	1 cut(s)	409
HapII	CCGG	1 cut(s)	169
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	146, 350
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	3 cut(s)	158, 356, 377
Hpy188III	TCNNGA	3 cut(s)	152, 238, 347
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 62, 65, 401
Hsp92II	CATG	2 cut(s)	146, 350
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	15, 182, 267, 285, 294, 312, 348
Lsp1109I	GCAGC	1 cut(s)	77
MaeI	CTAG	3 cut(s)	308, 353, 405
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	4 cut(s)	104, 147, 259, 291
MnlI	CCTC	3 cut(s)	174, 209, 310
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	5 cut(s)	252, 267, 323, 371, 412
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	2 cut(s)	282, 300
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	2 cut(s)	282, 300
MwoI	GCNNNNNNNGC	4 cut(s)	41, 62, 65, 401
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	146, 350
NmuCI	GTSAC	1 cut(s)	362
PagI	TCATGA	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	234
PinAI	ACCGGT	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	58, 67
PshBI	ATTAAT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	280, 298
PspGI	CCWGG	2 cut(s)	280, 298
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	227
SaqAI	TTAA	5 cut(s)	252, 267, 323, 371, 412
SatI	GCNGC	2 cut(s)	57, 66
Sau3AI	GATC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	282, 300
SetI	ASST	7 cut(s)	34, 229, 321, 329, 354, 362, 400
SfcI	CTRYAG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	104, 147, 259, 291
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	3 cut(s)	54, 57, 340
SspMI	CTAG	3 cut(s)	308, 353, 405
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	2 cut(s)	280, 298
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	4 cut(s)	104, 147, 259, 291
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	5 cut(s)	252, 267, 323, 371, 412
Tru9I	TTAA	5 cut(s)	252, 267, 323, 371, 412
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	129, 159, 335
TspRI	CASTG	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	2 cut(s)	147, 259
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	3 cut(s)	308, 353, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.