Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0019042

Physical Location & Seq

Genomic Coordinates Reverse (-)

51848058 .. 51855135

Gene Structure 7078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG381600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCACAACTCACTTGCTAAAAGGAAATCAGGTGCTTTCACTGCTTATTGCTCCGCCGCCGACGCAGCAAAAGATCCCATCAAGGATAAGGATACCCCTATTGAATTGAGATATGAAGCATTTCCTACTGTGATGGATATCCATGAAATTCGTGAAAGTTTGCCTCACCGAGTGGTTGAATATACTCGTGGAGGATTTTCAGCTGTAGGAATCAAGAACATTACGATTAATGAGAATTTCTTTAATGGGCATTTCCCTGGCAAGCCAATTGTTCCTGGTGTTCTAGTGATTGAGGCGATGGCAAAGCTCGGTGGCTTGATTCTGTTGCAATCAGAACTGGCAGGTCCTTGTGAGAGATTCTTTTTGGTTGGAACTGACAAAGTGCGGTTCAGGAAACCAGTTGTTGCTGGTGACACATTGGTGATGAGAATGACTATTGTCAAGATGCAGAAACGCTTAGGAATAGCAAAATGTGAAGGCAAGGCATATGTTGGAGGTGAACTTGTATGCGAGGCTGACTATTTGTTATATGTTGATAAGGCTGCAGGTCAAAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

FabA

Protein Analysis

186

Amino Acids

20.41

Weight (kDa)

8.77

Isoelectric Point (pI)

26.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FabA	PF07977	56 - 172	1.2e-28	FabA-like domain
ApeI-like	PF22818	72 - 165	4.3e-13	ApeI dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019042)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0226301
rosa_laevigata	RLG00000001753
rosa_multiflora	Rmu_sc0002055.1_g000007
rosa_rugosa	Rorug07G0236200
rosa_samantha	Rh7AG383300 Rh7BG370200 Rh7CG402700 Rh7DG381600
rosa_wichuraiana	Rw0G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	332, 536
AciI	CCGC	3 cut(s)	54, 57, 385
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	147, 235
AdeI	CACNNNGTG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	104, 179
AjnI	CCWGG	2 cut(s)	256, 274
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	2 cut(s)	203, 307
AluI	AGCT	2 cut(s)	203, 307
AlwI	GGATC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	65, 542
ApoI	RAATTY	2 cut(s)	147, 235
AseI	ATTAAT	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	4 cut(s)	158, 422, 433, 509
AvaII	GGWCC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	77, 529
BccI	CCATC	3 cut(s)	86, 127, 292
BciT130I	CCWGG	2 cut(s)	258, 276
BciVI	GTATCC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	2 cut(s)	204, 543
BfuAI	ACCTGC	2 cut(s)	332, 536
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	3 cut(s)	57, 66, 543
BlsI	GCNGC	3 cut(s)	58, 67, 544
Bme1390I	CCNGG	2 cut(s)	258, 276
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	258, 276
BmsI	GCATC	1 cut(s)	435
BoxI	GACNNNNGTC	1 cut(s)	437
Bpu10I	CCTNAGC	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	342, 398
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	258, 276
BseDI	CCNNGG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	137
BseNI	ACTGG	2 cut(s)	342, 398
BseXI	GCAGC	2 cut(s)	77, 529
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	3 cut(s)	54, 57, 385
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	2 cut(s)	332, 536
BspPI	GGATC	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	342, 398
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	73
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	258, 276
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	457
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 62, 65
BstNI	CCWGG	2 cut(s)	258, 276
BstPAI	GACNNNNGTC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	256, 274
BstSFI	CTRYAG	2 cut(s)	204, 543
BstV1I	GCAGC	2 cut(s)	77, 529
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	2 cut(s)	332, 536
Cac8I	GCNNGC	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	71
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	6 cut(s)	203, 265, 307, 315, 515, 542
CviKI_1	RGCY	6 cut(s)	203, 265, 307, 315, 515, 542
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	256, 274
EcoRV	GATATC	1 cut(s)	139
FaeI	CATG	1 cut(s)	146
FaiI	YATR	8 cut(s)	114, 144, 183, 487, 489, 508, 529, 531
FatI	CATG	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	57, 66, 543
Fsp4HI	GCNGC	3 cut(s)	57, 66, 543
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	3 cut(s)	57, 66, 543
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	3 cut(s)	210, 319, 357
HphI	GGTGA	4 cut(s)	158, 422, 433, 509
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	4 cut(s)	152, 214, 391, 442
Hpy8I	GTNNAC	1 cut(s)	500
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	4 cut(s)	4, 328, 448, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 62, 65
HpyF3I	CTNAG	1 cut(s)	457
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	2 cut(s)	77, 529
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	5 cut(s)	104, 147, 235, 267, 553
MmeI	TCCRAC	2 cut(s)	349, 472
MnlI	CCTC	5 cut(s)	174, 185, 286, 488, 505
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	2 cut(s)	228, 243
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	258, 276
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	258, 276
MwoI	GCNNNNNNNGC	3 cut(s)	41, 62, 65
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	410
OliI	CACNNNNGTG	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	210, 319, 357
PkrI	GCNGC	3 cut(s)	58, 67, 544
PpuMI	RGGWCCY	1 cut(s)	344
PshAI	GACNNNNGTC	1 cut(s)	437
PshBI	ATTAAT	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	256, 274
PspGI	CCWGG	2 cut(s)	256, 274
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	228, 243
SatI	GCNGC	3 cut(s)	57, 66, 543
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	258, 276
SetI	ASST	6 cut(s)	34, 205, 309, 346, 499, 550
SfaNI	GCATC	1 cut(s)	435
SfcI	CTRYAG	2 cut(s)	204, 543
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	5 cut(s)	104, 147, 235, 267, 553
SsiI	CCGC	3 cut(s)	54, 57, 385
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	256, 274
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	5 cut(s)	104, 147, 235, 267, 553
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	210, 319, 357
Tru1I	TTAA	2 cut(s)	228, 243
Tru9I	TTAA	2 cut(s)	228, 243
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	65, 542
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	129, 159
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	2 cut(s)	147, 235
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.