Rh7AG383300

FabA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019042
Physical Location & Seq
Reverse (-)
50019238 .. 50020867
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG383300.1

Sequence Viewer

Length: 579 bp
ATGCACAACTCACTTGCTAAAAGGAAATCAGGTGCTTTCACTGCTTATTGCTCCGCCGCCGACGCAGCAAAAGATCCCATCAAGGATAAGGATACCCCTATTGAATTGAGATATGAAGCATTTCCTACTGTGATGGATATCCATGAAATTCGTGAAAGTTTGCCTCACCGGTTTCCATTTCTGTTGGTGGATAGAGTGGTTGAATATACTCGTGGAGGATTTTCAGCTGTAGGAATCAAGAACATTACGATTAATGAGAATTTCTTTAATGGGCATTTCCCTGGCAAGCCAATTGTTCCTGGTGTTCTAGTGATTGAGGCGATGGCACAGCTCGGTGGCTTGATTCTGCTGCAACCAGAACTGGCAGGTCCTTGTGAGAGATTCTTTTTGGTTGGAACTGACAAGGTGCGGTTCAGGAAACCAGTTGTTGCTGGTGACACATTGGTGATGAGAATGACTATTGTCAAGATGCAGAAACGCTTAGGAATAGCAAAATGTGAAGGCAGGGCATACGTTGGAGGTGAACTTGTATGCGAGGCTGACTATTTGTTATATGCTGATAAGGCTGCAGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
FabA

Protein Analysis

192

Amino Acids

21.22

Weight (kDa)

8.63

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ApeP-like PF22817 49 - 182 3.4e-07 ApeP dehydratase
FabA PF07977 54 - 180 8.2e-34 FabA-like domain
ApeI-like PF22818 80 - 171 3.4e-13 ApeI dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019042)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226301
rosa_laevigata RLG00000001753
rosa_multiflora Rmu_sc0002055.1_g000007
rosa_rugosa Rorug07G0236200
rosa_samantha Rh7AG383300 Rh7BG370200 Rh7CG402700 Rh7DG381600
rosa_wichuraiana Rw0G017530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 356, 560
AciI CCGC 3 cut(s) 54, 57, 409
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 2 cut(s) 147, 259
AgeI ACCGGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 104, 203
AjnI CCWGG 2 cut(s) 280, 298
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 2 cut(s) 227, 331
AluI AGCT 2 cut(s) 227, 331
AlwI GGATC 1 cut(s) 68
ApeKI GCWGC 3 cut(s) 65, 349, 566
ApoI RAATTY 2 cut(s) 147, 259
AseI ATTAAT 1 cut(s) 252
AsiGI ACCGGT 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 4 cut(s) 158, 446, 457, 533
AvaII GGWCC 1 cut(s) 368
BauI CACGAG 1 cut(s) 210
BbvI GCAGC 3 cut(s) 77, 336, 553
BccI CCATC 3 cut(s) 86, 127, 316
BciT130I CCWGG 2 cut(s) 282, 300
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 2 cut(s) 228, 567
BfuAI ACCTGC 2 cut(s) 356, 560
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 4 cut(s) 57, 66, 350, 567
BlsI GCNGC 4 cut(s) 58, 67, 351, 568
Bme1390I CCNGG 2 cut(s) 282, 300
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmrFI CCNGG 2 cut(s) 282, 300
BmsI GCATC 1 cut(s) 459
BoxI GACNNNNGTC 1 cut(s) 461
Bpu10I CCTNAGC 1 cut(s) 481
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 366, 422
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 2 cut(s) 282, 300
BseDI CCNNGG 1 cut(s) 280
BseJI GATNNNNATC 1 cut(s) 137
BseNI ACTGG 2 cut(s) 366, 422
BseXI GCAGC 3 cut(s) 77, 336, 553
BshTI ACCGGT 1 cut(s) 168
BsiSI CCGG 1 cut(s) 169
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 3 cut(s) 54, 57, 409
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 2 cut(s) 356, 560
BspPI GGATC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 2 cut(s) 366, 422
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 282, 300
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 481
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 4 cut(s) 41, 62, 65, 563
BstNI CCWGG 2 cut(s) 282, 300
BstPAI GACNNNNGTC 1 cut(s) 461
BstSCI CCNGG 2 cut(s) 280, 298
BstSFI CTRYAG 2 cut(s) 228, 567
BstV1I GCAGC 3 cut(s) 77, 336, 553
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuI GTATCC 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
BveI ACCTGC 2 cut(s) 356, 560
Cac8I GCNNGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 71
CspAI ACCGGT 1 cut(s) 168
CviAII CATG 1 cut(s) 143
CviJI RGCY 6 cut(s) 227, 289, 331, 339, 539, 566
CviKI_1 RGCY 6 cut(s) 227, 289, 331, 339, 539, 566
DdeI CTNAG 1 cut(s) 481
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EciI GGCGGA 1 cut(s) 43
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 280, 298
EcoRV GATATC 1 cut(s) 139
FaeI CATG 1 cut(s) 146
FaiI YATR 7 cut(s) 114, 144, 207, 511, 532, 553, 555
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 4 cut(s) 57, 66, 350, 567
Fsp4HI GCNGC 4 cut(s) 57, 66, 350, 567
FspBI CTAG 1 cut(s) 308
GluI GCNGC 4 cut(s) 57, 66, 350, 567
HapII CCGG 1 cut(s) 169
HgaI GACGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 146
HinfI GANTC 3 cut(s) 234, 343, 381
HpaII CCGG 1 cut(s) 169
HphI GGTGA 4 cut(s) 158, 446, 457, 533
Hpy166II GTNNAC 1 cut(s) 524
Hpy188III TCNNGA 4 cut(s) 152, 238, 415, 466
Hpy8I GTNNAC 1 cut(s) 524
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 4 cut(s) 4, 352, 472, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 62, 65, 563
HpyF3I CTNAG 1 cut(s) 481
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 1 cut(s) 146
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 3 cut(s) 77, 336, 553
LweI GCATC 1 cut(s) 459
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 434
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 73
MluCI AATT 4 cut(s) 104, 147, 259, 291
MmeI TCCRAC 2 cut(s) 373, 496
MnlI CCTC 5 cut(s) 174, 209, 310, 512, 529
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 3 cut(s) 252, 267, 577
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 282, 300
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 2 cut(s) 282, 300
MwoI GCNNNNNNNGC 4 cut(s) 41, 62, 65, 563
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 434
OliI CACNNNNGTG 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 234, 343, 381
PinAI ACCGGT 1 cut(s) 168
PkrI GCNGC 4 cut(s) 58, 67, 351, 568
PpuMI RGGWCCY 1 cut(s) 368
PshAI GACNNNNGTC 1 cut(s) 461
PshBI ATTAAT 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 280, 298
PspGI CCWGG 2 cut(s) 280, 298
PspPI GGNCC 1 cut(s) 368
PspPPI RGGWCCY 1 cut(s) 368
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 3 cut(s) 252, 267, 577
SatI GCNGC 4 cut(s) 57, 66, 350, 567
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 282, 300
SetI ASST 8 cut(s) 34, 229, 333, 370, 408, 516, 523, 574
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 2 cut(s) 228, 567
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 443
Sse9I AATT 4 cut(s) 104, 147, 259, 291
SsiI CCGC 3 cut(s) 54, 57, 409
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 280, 298
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 516
TasI AATT 4 cut(s) 104, 147, 259, 291
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 3 cut(s) 234, 343, 381
Tru1I TTAA 3 cut(s) 252, 267, 577
Tru9I TTAA 3 cut(s) 252, 267, 577
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 65, 349, 566
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 129, 159
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 368
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 2 cut(s) 147, 259
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.