Rw0G017530

FabA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00784
OG0019042
Physical Location & Seq
Forward (+)
23798 .. 26057
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017530.1

Sequence Viewer

Length: 672 bp
ATGGCCATGTCTTTCGTCTATTCACTTGTAGTTCATAATAGTACAAGTACAACTACTTCTCATCTATCTAGAATCTCTTTACCGAAATCTCTGCCGATTCATTTGACAGCTAAAAGGAAATCAGGTGCTTTCACTGCTTATTGCTCCGCCGCCGACGCAGCAAAAGATCCCATCAAGGATAAGGATACCCCTATTGAATTGAGATATGAAGCATTTCCTACTGTGATGGATATCCATGAAATTCGTGAAAGTTTGCCTCACCGGTTTCCATTTCTGTTGGTGGATAGAGTGGTTGAATATACTCGTGGAGGATTTTCAGCTGTAGGAATCAAGAACATTACGATTAATGAGAATTTCTTTAATGGGCATTTCCCTGGCAAGCCAATTGTTCCTGGTGTTCTAGTGATTGAGGCGATGGCACAGCTCGGTGGCTTGATTCTGCTGCAACCAGAATTGGCAGGTCCTTGTGAGAGATTCTTTTTGGTTGGAACTGACAAAGTGCGGTTCAGGAAACCAGTTGTTGCTGGTGACACATTGGTGATGAGAATGACTATTGTCAAGATGCAGAAACGCTTAGGAATAGCAAAATGTGAAGGCAAGGCATATGTTGGAGGTGAACTTGTATGCGAGGCTGAATATTTGTTATATGTTGATATGGCTACAGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
FabA

Protein Analysis

223

Amino Acids

24.63

Weight (kDa)

8.83

Isoelectric Point (pI)

26.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ApeP-like PF22817 80 - 212 6.6e-07 ApeP dehydratase
FabA PF07977 85 - 212 1e-33 FabA-like domain
ApeI-like PF22818 111 - 204 3.3e-13 ApeI dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019042)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226301
rosa_laevigata RLG00000001753
rosa_multiflora Rmu_sc0002055.1_g000007
rosa_rugosa Rorug07G0236200
rosa_samantha Rh7AG383300 Rh7BG370200 Rh7CG402700 Rh7DG381600
rosa_wichuraiana Rw0G017530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 449
AciI CCGC 3 cut(s) 147, 150, 502
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 240, 352
AfaI GTAC 2 cut(s) 43, 49
AgeI ACCGGT 1 cut(s) 261
AgsI TTSAA 2 cut(s) 197, 296
AjnI CCWGG 2 cut(s) 373, 391
AleI CACNNNNGTG 1 cut(s) 536
AluBI AGCT 3 cut(s) 110, 320, 424
AluI AGCT 3 cut(s) 110, 320, 424
AlwI GGATC 1 cut(s) 161
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 158, 442
ApoI RAATTY 2 cut(s) 240, 352
AseI ATTAAT 1 cut(s) 345
AsiGI ACCGGT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 4 cut(s) 251, 539, 550, 626
AvaII GGWCC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 40, 72
BauI CACGAG 1 cut(s) 303
BbvI GCAGC 2 cut(s) 170, 429
BccI CCATC 3 cut(s) 179, 220, 409
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 2 cut(s) 375, 393
BciVI GTATCC 1 cut(s) 178
BfaI CTAG 2 cut(s) 69, 401
BfmI CTRYAG 2 cut(s) 321, 660
BfuAI ACCTGC 1 cut(s) 449
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 3 cut(s) 150, 159, 443
BlsI GCNGC 3 cut(s) 151, 160, 444
Bme1390I CCNGG 2 cut(s) 375, 393
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 461
BmrFI CCNGG 2 cut(s) 375, 393
BmsI GCATC 1 cut(s) 552
BoxI GACNNNNGTC 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 574
BsaBI GATNNNNATC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 515
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 2 cut(s) 375, 393
BseDI CCNNGG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 230
BseNI ACTGG 1 cut(s) 515
BseXI GCAGC 2 cut(s) 170, 429
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 261
BsiSI CCGG 1 cut(s) 262
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 3 cut(s) 147, 150, 502
BspANI GGCC 1 cut(s) 5
BspMI ACCTGC 1 cut(s) 449
BspPI GGATC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 1 cut(s) 515
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 375, 393
Bst4CI ACNGT 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 574
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 3 cut(s) 134, 155, 158
BstNI CCWGG 2 cut(s) 375, 393
BstPAI GACNNNNGTC 1 cut(s) 554
BstSCI CCNGG 2 cut(s) 373, 391
BstSFI CTRYAG 2 cut(s) 321, 660
BstV1I GCAGC 2 cut(s) 170, 429
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 428
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 461
CseI GACGC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 42, 48
CspAI ACCGGT 1 cut(s) 261
CviAII CATG 2 cut(s) 7, 236
CviJI RGCY 8 cut(s) 5, 110, 320, 382, 424, 432, 632, 659
CviKI_1 RGCY 8 cut(s) 5, 110, 320, 382, 424, 432, 632, 659
CviQI GTAC 2 cut(s) 42, 48
DdeI CTNAG 1 cut(s) 574
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 136
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 373, 391
EcoRV GATATC 1 cut(s) 232
FaeI CATG 2 cut(s) 10, 239
FatI CATG 2 cut(s) 6, 235
FauNDI CATATG 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 150, 159, 443
Fsp4HI GCNGC 3 cut(s) 150, 159, 443
FspBI CTAG 2 cut(s) 69, 401
GluI GCNGC 3 cut(s) 150, 159, 443
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 262
HgaI GACGC 1 cut(s) 164
Hin1II CATG 2 cut(s) 10, 239
HinfI GANTC 5 cut(s) 72, 97, 327, 436, 474
HpaII CCGG 1 cut(s) 262
HphI GGTGA 4 cut(s) 251, 539, 550, 626
Hpy166II GTNNAC 1 cut(s) 617
Hpy188III TCNNGA 5 cut(s) 69, 245, 331, 508, 559
Hpy8I GTNNAC 1 cut(s) 617
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 445, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 155, 158
HpyF3I CTNAG 1 cut(s) 574
Hsp92II CATG 2 cut(s) 10, 239
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 149
Lsp1109I GCAGC 2 cut(s) 170, 429
LweI GCATC 1 cut(s) 552
MaeI CTAG 2 cut(s) 69, 401
MaeIII GTNAC 1 cut(s) 527
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 197, 240, 352, 384, 452
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 466, 589
MnlI CCTC 5 cut(s) 267, 302, 403, 605, 622
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 213
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 345, 360, 670
MslI CAYNNNNRTG 1 cut(s) 536
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 2 cut(s) 375, 393
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 2 cut(s) 375, 393
MwoI GCNNNNNNNGC 3 cut(s) 134, 155, 158
NdeI CATATG 1 cut(s) 604
NdeII GATC 1 cut(s) 166
NlaIII CATG 2 cut(s) 10, 239
NmuCI GTSAC 1 cut(s) 527
OliI CACNNNNGTG 1 cut(s) 536
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 5 cut(s) 72, 97, 327, 436, 474
PinAI ACCGGT 1 cut(s) 261
PkrI GCNGC 3 cut(s) 151, 160, 444
PpuMI RGGWCCY 1 cut(s) 461
PshAI GACNNNNGTC 1 cut(s) 554
PshBI ATTAAT 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 461
Psp6I CCWGG 2 cut(s) 373, 391
PspGI CCWGG 2 cut(s) 373, 391
PspPI GGNCC 1 cut(s) 461
PspPPI RGGWCCY 1 cut(s) 461
PsuI RGATCY 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 2 cut(s) 43, 49
RsaNI GTAC 2 cut(s) 42, 48
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 3 cut(s) 345, 360, 670
SatI GCNGC 3 cut(s) 150, 159, 443
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 461
ScrFI CCNGG 2 cut(s) 375, 393
SetI ASST 7 cut(s) 112, 127, 322, 426, 463, 616, 667
SfaNI GCATC 1 cut(s) 552
SfcI CTRYAG 2 cut(s) 321, 660
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 536
Sse9I AATT 5 cut(s) 197, 240, 352, 384, 452
SsiI CCGC 3 cut(s) 147, 150, 502
SspI AATATT 1 cut(s) 638
SspMI CTAG 2 cut(s) 69, 401
StyD4I CCNGG 2 cut(s) 373, 391
TaaI ACNGT 1 cut(s) 223
TasI AATT 5 cut(s) 197, 240, 352, 384, 452
TatI WGTACW 2 cut(s) 41, 47
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 5 cut(s) 72, 97, 327, 436, 474
Tru1I TTAA 3 cut(s) 345, 360, 670
Tru9I TTAA 3 cut(s) 345, 360, 670
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 2 cut(s) 158, 442
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 4 cut(s) 23, 89, 222, 252
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 461
VspI ATTAAT 1 cut(s) 345
XapI RAATTY 2 cut(s) 240, 352
XbaI TCTAGA 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 2 cut(s) 69, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.