Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002093.1

Orthogroup ID

OG0019788

Physical Location & Seq

Genomic Coordinates Forward (+)

119214 .. 121630

Gene Structure 2417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002093.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgaccaaagatgacaatgaatcagcggccacagatgatggagggtatgttcggaaacatgctacatactttctgatggataatttgcaagtgaaggctcctctttctacgtcttatatgcttcctttgattctggttaagaaatttgatcctgaggatggtaccgttaagcagaggttgcttaaagttgaagagaggtggattgatgtgggtagggatgaggctctgaaattgctgaaggcatcattggaatcaaagacggttctcactgatgtgtttcttggaaagaaagaggcaaaagcagaggtggaggcagaggcgacattggtgcaatcttgtgcttcaagtggaagtgatagcttggaatatgaatgggatttttgtgagtcgtcttcaccacttcgaaaccctacccttcggccgcagctgctctttctcctcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

148

Amino Acids

16.65

Weight (kDa)

5.0

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019788)

Species	Orthologous Gene IDs
malus_domestica	MD11G1084100.v1.1
rosa_multiflora	Rmu_sc0002093.1_g000030
rosa_rugosa	Rorug01G0323700
rosa_samantha	Rh1AG332400 Rh1BG293300 Rh1CG310200 Rh1DG325600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	161
AciI	CCGC	2 cut(s)	26, 422
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	2 cut(s)	27, 419
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	191, 345
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AleI	CACNNNNGTG	1 cut(s)	272
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	2 cut(s)	360, 427
AluI	AGCT	2 cut(s)	360, 427
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	2 cut(s)	27, 419
ApeKI	GCWGC	2 cut(s)	424, 427
ApoI	RAATTY	1 cut(s)	143
Asp718I	GGTACC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	387
AsuII	TTCGAA	1 cut(s)	403
AxyI	CCTNAGG	2 cut(s)	153, 440
BanI	GGYRCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	414, 436
BccI	CCATC	3 cut(s)	32, 70, 152
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BisI	GCNGC	4 cut(s)	27, 422, 425, 428
BlsI	GCNGC	4 cut(s)	28, 423, 426, 429
BmiI	GGNNCC	2 cut(s)	99, 163
BmsI	GCATC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse21I	CCTNAGG	2 cut(s)	153, 440
BseGI	GGATG	2 cut(s)	163, 223
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	2 cut(s)	90, 428
BseX3I	CGGCCG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	414, 436
Bsh1285I	CGRYCG	1 cut(s)	422
BshFI	GGCC	2 cut(s)	29, 421
BshNI	GGYRCC	1 cut(s)	161
BsiEI	CGRYCG	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	158
BsnI	GGCC	2 cut(s)	29, 421
Bsp119I	TTCGAA	1 cut(s)	403
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	26, 422
BspANI	GGCC	2 cut(s)	29, 421
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	99, 163
BspPI	GGATC	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	161
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	166, 262
Bst6I	CTCTTC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	153, 440
BstF5I	GGATG	2 cut(s)	163, 223
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMCI	CGRYCG	1 cut(s)	422
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 427
BstNSI	RCATGY	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	414, 436
BstV2I	GAAGAC	1 cut(s)	384
BstZI	CGGCCG	1 cut(s)	419
Bsu36I	CCTNAGG	2 cut(s)	153, 440
BsuRI	GGCC	2 cut(s)	29, 421
BtsCI	GGATG	2 cut(s)	163, 223
BtsIMutI	CAGTG	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	6 cut(s)	29, 98, 224, 360, 421, 427
CviKI_1	RGCY	6 cut(s)	29, 98, 224, 360, 421, 427
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	2 cut(s)	153, 440
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EaeI	YGGCCR	2 cut(s)	27, 419
EagI	CGGCCG	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EclXI	CGGCCG	1 cut(s)	419
Eco52I	CGGCCG	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	257
Eco81I	CCTNAGG	2 cut(s)	153, 440
FaeI	CATG	1 cut(s)	62
FaiI	YATR	6 cut(s)	48, 60, 67, 117, 119, 369
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	4 cut(s)	27, 422, 425, 428
FokI	GGATG	2 cut(s)	170, 230
Fsp4HI	GCNGC	4 cut(s)	27, 422, 425, 428
GluI	GCNGC	4 cut(s)	27, 422, 425, 428
HaeIII	GGCC	2 cut(s)	29, 421
Hin1II	CATG	1 cut(s)	62
HinfI	GANTC	4 cut(s)	20, 130, 251, 386
HphI	GGTGA	1 cut(s)	387
Hpy188I	TCNGA	3 cut(s)	54, 75, 228
Hpy188III	TCNNGA	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	88, 232, 425
HpyCH4III	ACNGT	2 cut(s)	166, 262
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	88, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 427
HpyF3I	CTNAG	2 cut(s)	153, 440
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	62
KpnI	GGTACC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	3 cut(s)	119, 165, 427
Lsp1109I	GCAGC	2 cut(s)	414, 436
LweI	GCATC	1 cut(s)	251
MaeII	ACGT	1 cut(s)	110
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	203, 384
MluCI	AATT	3 cut(s)	82, 143, 230
MlyI	GAGTC	1 cut(s)	395
MseI	TTAA	3 cut(s)	138, 168, 183
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	2 cut(s)	26, 427
MwoI	GCNNNNNNNGC	2 cut(s)	178, 427
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	2 cut(s)	99, 163
NspI	RCATGY	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	403
OliI	CACNNNNGTG	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	20, 130, 251
PkrI	GCNGC	4 cut(s)	28, 423, 426, 429
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	99, 163
PvuII	CAGCTG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	138, 168, 183
SatI	GCNGC	4 cut(s)	27, 422, 425, 428
Sau3AI	GATC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	395
SetI	ASST	7 cut(s)	113, 179, 200, 309, 362, 429, 446
SfaNI	GCATC	1 cut(s)	251
SfuI	TTCGAA	1 cut(s)	403
SgeI	CNNG	8 cut(s)	71, 101, 146, 164, 293, 348, 357, 373
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	82, 143, 230
SsiI	CCGC	2 cut(s)	26, 422
TaaI	ACNGT	2 cut(s)	166, 262
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	403
TasI	AATT	3 cut(s)	82, 143, 230
TauI	GCSGC	2 cut(s)	29, 424
TfiI	GAWTC	3 cut(s)	20, 130, 251
Tru1I	TTAA	3 cut(s)	138, 168, 183
Tru9I	TTAA	3 cut(s)	138, 168, 183
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	2 cut(s)	424, 427
TspDTI	ATGAA	2 cut(s)	33, 384
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.