Rh1BG293300

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
42943123 .. 42943803
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG293300.1

Sequence Viewer

Length: 255 bp
ATGACCAAAGATGACAATGAATCAGCGGCCACAGATGATGGTGGGTATGTTCGGAAACATGCTACATACTTTCTGATGGATAACTTGCAAGTGAAGGCTCCTCTTTCTACGTCTTATATGCTTCCTTTGATTCTGGTTAAGAAACTTGATCCTGAGGATGGTACCGTTAACCAGAGGTGGCTTGAAGTTGAAGAGAGGTGTGTTGATGTGGGCAGGGATGAGGCTCTGAAATTGCTGAAGGCATCATTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.5

Weight (kDa)

4.79

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019788)

Species Orthologous Gene IDs
malus_domestica MD11G1084100.v1.1
rosa_multiflora Rmu_sc0002093.1_g000030
rosa_rugosa Rorug01G0323700
rosa_samantha Rh1AG332400 Rh1BG293300 Rh1CG310200 Rh1DG325600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 161
AciI CCGC 1 cut(s) 26
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 185, 191
AjuI GAANNNNNNNTTGG 1 cut(s) 230
AlwI GGATC 1 cut(s) 143
AoxI GGCC 1 cut(s) 27
Asp718I GGTACC 1 cut(s) 161
AxyI CCTNAGG 1 cut(s) 153
BanI GGYRCC 1 cut(s) 161
BccI CCATC 3 cut(s) 32, 70, 152
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 99, 163
BmsI GCATC 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 163, 223
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 158
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 99, 163
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 161
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 163, 223
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 62
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 2 cut(s) 163, 223
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 59
CviJI RGCY 4 cut(s) 29, 98, 181, 224
CviKI_1 RGCY 4 cut(s) 29, 98, 181, 224
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 153
FaeI CATG 1 cut(s) 62
FaiI YATR 5 cut(s) 48, 60, 67, 117, 119
FatI CATG 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 170, 230
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 29
Hin1II CATG 1 cut(s) 62
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 20, 130
HpaI GTTAAC 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 54, 75, 228
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 88, 232
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 1 cut(s) 62
KpnI GGTACC 1 cut(s) 165
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 4 cut(s) 119, 165, 185, 199
LweI GCATC 1 cut(s) 251
MaeII ACGT 1 cut(s) 110
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 203
MluCI AATT 1 cut(s) 230
MnlI CCTC 5 cut(s) 111, 148, 168, 189, 214
MseI TTAA 2 cut(s) 138, 168
MspA1I CMGCKG 1 cut(s) 26
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 2 cut(s) 99, 163
NspI RCATGY 1 cut(s) 62
PfeI GAWTC 2 cut(s) 20, 130
PkrI GCNGC 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 99, 163
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 138, 168
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 148
SetI ASST 3 cut(s) 113, 179, 200
SfaNI GCATC 1 cut(s) 251
SgeI CNNG 9 cut(s) 71, 97, 101, 146, 158, 164, 184, 194, 226
Sse9I AATT 1 cut(s) 230
SsiI CCGC 1 cut(s) 26
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 113
TasI AATT 1 cut(s) 230
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 2 cut(s) 20, 130
Tru1I TTAA 2 cut(s) 138, 168
Tru9I TTAA 2 cut(s) 138, 168
TspDTI ATGAA 1 cut(s) 33
XceI RCATGY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.