Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019788

Physical Location & Seq

Genomic Coordinates Forward (+)

56770126 .. 56770521

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG332400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCCTCTTTCAACTGTCACTAGGCTGCTCTCCAGGGATCATAGCGTGCTTGGTAGCTTAGGCAAGCTGCATGAGAGTATCGAAAAGCTTGATCATATGTTCTTCCTGCCTAATCTTAACACTAGGGACACCCTGTTGAAACCCAAATCACCGATCCATCATTTGTTGATGACCAAAGATGACAATGAATCAGCAGCCACAGATGATGGAGGGTATGTTAGGAAACATGCTACATACTTTCTGATGGATAACTTGCAAGTGAAGGCTCCTCTTTCTACGTCTTATATGCTTCCTTTGATTCTGGTTAAGAAATTTGATCCTGAGGATGGTACCGTTAAGCAGAGGTTGCTTAAAGTTGAAGAGAGGTGTGTTGATGTGGGCAGGGATGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

131

Amino Acids

14.89

Weight (kDa)

6.58

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019788)

Species	Orthologous Gene IDs
malus_domestica	MD11G1084100.v1.1
rosa_multiflora	Rmu_sc0002093.1_g000030
rosa_rugosa	Rorug01G0323700
rosa_samantha	Rh1AG332400 Rh1BG293300 Rh1CG310200 Rh1DG325600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	329
AclWI	GGATC	3 cut(s)	45, 148, 311
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	12, 139, 359
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	57, 67, 88
AluI	AGCT	3 cut(s)	57, 67, 88
AlwI	GGATC	3 cut(s)	45, 148, 311
ApeKI	GCWGC	3 cut(s)	25, 67, 194
ApoI	RAATTY	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	141
AxyI	CCTNAGG	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	329
BbvI	GCAGC	3 cut(s)	12, 54, 206
BccI	CCATC	4 cut(s)	165, 200, 238, 320
BciT130I	CCWGG	1 cut(s)	34
BclI	TGATCA	1 cut(s)	91
BfaI	CTAG	2 cut(s)	21, 123
BisI	GCNGC	3 cut(s)	26, 68, 195
BlsI	GCNGC	3 cut(s)	27, 69, 196
Bme1390I	CCNGG	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	267, 331
BmrFI	CCNGG	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	331, 391
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	12, 54, 206
BshNI	GGYRCC	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	37, 91, 153, 316
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	267, 331
BspPI	GGATC	3 cut(s)	45, 148, 311
BspT107I	GGYRCC	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	4 cut(s)	37, 91, 153, 316
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	16, 334
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	47, 65
BstDEI	CTNAG	2 cut(s)	58, 321
BstF5I	GGATG	2 cut(s)	331, 391
BstKTI	GATC	4 cut(s)	40, 94, 156, 319
BstMBI	GATC	4 cut(s)	37, 91, 153, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	12, 54, 206
Bsu36I	CCTNAGG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	331, 391
Cac8I	GCNNGC	2 cut(s)	47, 65
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	2 cut(s)	71, 227
CviJI	RGCY	6 cut(s)	25, 57, 67, 88, 197, 266
CviKI_1	RGCY	6 cut(s)	25, 57, 67, 88, 197, 266
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	2 cut(s)	58, 321
DpnI	GATC	4 cut(s)	39, 93, 155, 318
DpnII	GATC	4 cut(s)	37, 91, 153, 316
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	32
FaeI	CATG	2 cut(s)	74, 230
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	2 cut(s)	70, 226
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	26, 68, 195
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	26, 68, 195
FspBI	CTAG	2 cut(s)	21, 123
GluI	GCNGC	3 cut(s)	26, 68, 195
GsuI	CTGGAG	1 cut(s)	16
Hin1II	CATG	2 cut(s)	74, 230
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	188, 298
HphI	GGTGA	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	16, 334
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	2 cut(s)	70, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	2 cut(s)	58, 321
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	74, 230
KpnI	GGTACC	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	37, 91, 153, 316
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	7 cut(s)	19, 46, 119, 146, 287, 333, 367
Lsp1109I	GCAGC	3 cut(s)	12, 54, 206
MaeI	CTAG	2 cut(s)	21, 123
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	39, 93, 155, 318
MboI	GATC	4 cut(s)	37, 91, 153, 316
MboII	GAAGA	2 cut(s)	94, 371
MluCI	AATT	1 cut(s)	311
MnlI	CCTC	7 cut(s)	15, 203, 279, 316, 336, 357, 382
MseI	TTAA	4 cut(s)	117, 306, 336, 351
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	4 cut(s)	37, 91, 153, 316
NlaIII	CATG	2 cut(s)	74, 230
NlaIV	GGNNCC	2 cut(s)	267, 331
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	188, 298
PkrI	GCNGC	3 cut(s)	27, 69, 196
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	267, 331
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SaqAI	TTAA	4 cut(s)	117, 306, 336, 351
SatI	GCNGC	3 cut(s)	26, 68, 195
Sau3AI	GATC	4 cut(s)	37, 91, 153, 316
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	7 cut(s)	59, 69, 90, 281, 347, 368, 393
Sse9I	AATT	1 cut(s)	311
SspMI	CTAG	2 cut(s)	21, 123
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	16, 334
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	188, 298
Tru1I	TTAA	4 cut(s)	117, 306, 336, 351
Tru9I	TTAA	4 cut(s)	117, 306, 336, 351
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	25, 67, 194
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	201
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	2 cut(s)	21, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.