Rmu_sc0002169.1_g000001

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002169.1
Physical Location & Seq
Forward (+)
1 .. 5821
5821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002169.1_g000001.1.cds

Sequence Viewer

Length: 2039 bp
ctcccaccgccgacgatcctcaacccctccttcatgccaacctcaccgccggcgactatgctcacggggagggctacagtgtggtactcccggagaaattgcaaacaggaaaatggaatgtgtacagatctgcacgatcgcctttcgagcttgtaactcgttttgctaagcatccggagattgagacattgcacgacaactttgtacgttcggctgaaactttcatagatcacaagtatttgggtacacgaattcggccggatggcactgttggagagtacaaatggatgacatatggagaaacagcaacagttcgggaagcattaggttccggcctacgattgaatgggatacaaaaaggagcttctgtgggactttttttcataaacagaccagagtggttgattgtggatcatgcttgttctgcatattcgttcatctcagttcctttatacgatactcttggacctgatgcagtcaagtatgttgtgaatcatgccaatgtagaagcaatcttttgttccgtagagaatctgaaaacattgttaagcttcctttccgagatcccatctgtagctcttatagtggttgtgggaggggcagatgaacacttgcgttcccttccttctataactggagtgaaacttatgtcatatttagagcttgtcagtcagggccgcagtagtctacagcctttttgccctcctaatcccgaagatgttgcaaccatctgctacacaagtggtacaactggaacaccaaagggtgttgtgttgactcatggaaacttaatttcaagttgtgctggattcagtcgtgcagtgcaattcatttcatctgatatttatatatcctatcttcctttggcacacatctatgagcgagctaatcaaattgccttactgtactacggtagtgcttgtggtttctaccagggggacaatctgaaactgatggatgacctggctgcattaagacctacacttttttccagtgttccacggttgtacaatcaaatatatgctggaattacaaatgctgttaaaacatcggggattctaaaggagagactattcagagccgcctacaattctaagaagcagtccgtgatgagtggttcaaaatcatcaccaatgtgggacagattggtttttaataaaatcaaggcaaagcttggaggacgaatccgtttaatgtcatctggtgcttcacccttgtcccctgatgtcatggacttccttagggtgtgctttggttgtgaagtaattgaaggatatggtatgacagagacttcatgtgtcataagcatgactgatgagggtgacacattaactggccatgttggttcccccaatgcagcctgtgaagtaaaactggtcgatgtccctgaaatgaattacacttctgaggaccagccatatcctcgtggggaaatctgtgtccggggtcccattgtcttccaaggctactacaaagatgaaaaccagacgaaggaagtaattgatgttgatggttggctgcatactggagacattggtttgtggttacctggaggccggcttaagatcattgataggaaaaagaacatcttcaagttggcacagggtgagtatatagcaccagagaagattgagaatgtctatgccaagtgccaatttgttgctcaatgttttgtatacggtgatagcttcaagtcttgtctagtagctatagttgcagtggatccgaatgtattgaaagagtgggctgcttctgaaggcataaagtacgaagatctcagacaattgtgcaataatccaagagtaaggtctgctgttttggctgacatggatgccattggaaaggaggcacagttgagaggttttgaatttgcaaaagctgtaactttagttcctgaaccattcacagtagataatggccttctcactccaaccttcaagatcaagaggcctcaagcaaaggcacactttgccgaagcaatatcaaacatgtattctgagctttccaaatctgatgttgtaacgaaaaaaattggatga

Protein Analysis

678

Amino Acids

74.65

Weight (kDa)

6.41

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 687, 1676
AccIII TCCGGA 1 cut(s) 174
AciI CCGC 4 cut(s) 8, 47, 678, 1082
AclWI GGATC 5 cut(s) 10, 419, 558, 1717, 1730
AcoI YGGCCR 2 cut(s) 256, 1335
AcsI RAATTY 2 cut(s) 251, 1867
AcuI CTGAAG 1 cut(s) 1775
AdeI CACNNNGTG 1 cut(s) 1606
AfaI GTAC 9 cut(s) 86, 124, 206, 246, 280, 747, 907, 1009, 1768
AfiI CCNNNNNNNGG 1 cut(s) 1491
AflII CTTAAG 1 cut(s) 1561
AflIII ACRYGT 1 cut(s) 1988
AgsI TTSAA 9 cut(s) 345, 797, 1121, 1270, 1593, 1692, 1737, 1867, 1938
AjnI CCWGG 3 cut(s) 932, 962, 1548
AleI CACNNNNGTG 1 cut(s) 1134
Alw26I GTCTC 4 cut(s) 178, 1062, 1282, 1523
AlwI GGATC 5 cut(s) 10, 419, 558, 1717, 1730
Aor13HI TCCGGA 1 cut(s) 174
AoxI GGCC 7 cut(s) 256, 333, 675, 1335, 1554, 1917, 1948
ApeKI GCWGC 4 cut(s) 967, 1357, 1518, 1747
ApoI RAATTY 2 cut(s) 251, 1867
Asp700I GAANNNNTTC 1 cut(s) 1588
AspS9I GGNCC 4 cut(s) 466, 675, 1410, 1447
AsuC2I CCSGG 2 cut(s) 91, 1444
AsuHPI GGTGA 6 cut(s) 36, 1121, 1202, 1333, 1618, 1693
AvaII GGWCC 3 cut(s) 466, 1410, 1447
AxyI CCTNAGG 1 cut(s) 1240
BalI TGGCCA 1 cut(s) 1337
BamHI GGATCC 1 cut(s) 1722
BauI CACGAG 1 cut(s) 1424
BbsI GAAGAC 1 cut(s) 1449
BbvI GCAGC 4 cut(s) 954, 1369, 1505, 1734
BccI CCATC 5 cut(s) 256, 576, 736, 948, 1504
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BciT130I CCWGG 3 cut(s) 934, 964, 1550
BciVI GTATCC 1 cut(s) 344
BcnI CCSGG 2 cut(s) 91, 1444
BcoDI GTCTC 4 cut(s) 178, 1062, 1282, 1523
BfaI CTAG 1 cut(s) 1702
BfmI CTRYAG 4 cut(s) 75, 572, 688, 1709
BfrI CTTAAG 1 cut(s) 1561
BfuI GTATCC 1 cut(s) 344
BglII AGATCT 2 cut(s) 127, 1773
BisI GCNGC 6 cut(s) 678, 968, 1082, 1358, 1519, 1748
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 6 cut(s) 679, 969, 1083, 1359, 1520, 1749
Bme1390I CCNGG 5 cut(s) 91, 934, 964, 1444, 1550
Bme18I GGWCC 3 cut(s) 466, 1410, 1447
BmgT120I GGNCC 4 cut(s) 466, 675, 1410, 1447
BmiI GGNNCC 5 cut(s) 330, 1347, 1448, 1449, 1724
BmrFI CCNGG 5 cut(s) 91, 934, 964, 1444, 1550
BmsI GCATC 3 cut(s) 180, 462, 1821
BpiI GAAGAC 1 cut(s) 1449
BpmI CTGGAG 3 cut(s) 656, 1547, 1571
Bpu1102I GCTNAGC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 1937
BpuMI CCSGG 2 cut(s) 91, 1444
BsaJI CCNNGG 4 cut(s) 933, 1000, 1443, 1461
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 4 cut(s) 353, 383, 1837, 1867
Bsc4I CCNNNNNNNGG 1 cut(s) 1491
Bse118I RCCGGY 2 cut(s) 49, 1556
Bse1I ACTGG 6 cut(s) 639, 756, 992, 1338, 1379, 1530
Bse21I CCTNAGG 1 cut(s) 1240
Bse3DI GCAATG 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 174
BseBI CCWGG 3 cut(s) 934, 964, 1550
BseDI CCNNGG 4 cut(s) 933, 1000, 1443, 1461
BseGI GGATG 5 cut(s) 171, 267, 293, 963, 1836
BseLI CCNNNNNNNGG 1 cut(s) 1491
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 4 cut(s) 455, 1397, 1791, 1988
BseNI ACTGG 6 cut(s) 639, 756, 992, 1338, 1379, 1530
BseX3I CGGCCG 1 cut(s) 256
BseXI GCAGC 4 cut(s) 954, 1369, 1505, 1734
BsgI GTGCAG 2 cut(s) 116, 839
Bsh1285I CGRYCG 2 cut(s) 139, 259
BshFI GGCC 7 cut(s) 258, 335, 677, 1337, 1556, 1919, 1950
BsiEI CGRYCG 2 cut(s) 139, 259
BsiSI CCGG 7 cut(s) 50, 91, 175, 259, 332, 1443, 1557
BslFI GGGAC 6 cut(s) 386, 952, 1153, 1203, 1369, 1433
BslI CCNNNNNNNGG 1 cut(s) 1491
BsmAI GTCTC 4 cut(s) 178, 1062, 1282, 1523
BsmFI GGGAC 6 cut(s) 386, 952, 1153, 1203, 1369, 1433
BsnI GGCC 7 cut(s) 258, 335, 677, 1337, 1556, 1919, 1950
Bsp13I TCCGGA 1 cut(s) 174
Bsp1407I TGTACA 2 cut(s) 122, 1007
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 4 cut(s) 8, 47, 678, 1082
BspANI GGCC 7 cut(s) 258, 335, 677, 1337, 1556, 1919, 1950
BspCNI CTCAG 4 cut(s) 454, 1398, 1790, 1989
BspEI TCCGGA 1 cut(s) 174
BspLI GGNNCC 5 cut(s) 330, 1347, 1448, 1449, 1724
BspPI GGATC 5 cut(s) 10, 419, 558, 1717, 1730
BspTI CTTAAG 1 cut(s) 1561
BsrDI GCAATG 1 cut(s) 187
BsrFI RCCGGY 2 cut(s) 49, 1556
BsrGI TGTACA 2 cut(s) 122, 1007
BsrI ACTGG 6 cut(s) 639, 756, 992, 1338, 1379, 1530
BssAI RCCGGY 2 cut(s) 49, 1556
BssECI CCNNGG 4 cut(s) 933, 1000, 1443, 1461
BssNAI GTATAC 1 cut(s) 1677
BssSI CACGAG 1 cut(s) 1424
BssT1I CCWWGG 1 cut(s) 1461
Bst1107I GTATAC 1 cut(s) 1677
Bst2BI CACGAG 1 cut(s) 1424
Bst2UI CCWGG 3 cut(s) 934, 964, 1550
Bst4CI ACNGT 9 cut(s) 79, 270, 312, 905, 913, 1004, 1681, 1853, 1908
BstAFI CTTAAG 1 cut(s) 1561
BstAPI GCANNNNNTGC 1 cut(s) 1969
BstAUI TGTACA 2 cut(s) 122, 1007
BstC8I GCNNGC 3 cut(s) 51, 884, 1558
BstDEI CTNAG 7 cut(s) 167, 441, 1094, 1240, 1406, 1777, 1997
BstDSI CCRYGG 1 cut(s) 1000
BstEII GGTNACC 1 cut(s) 1544
BstF5I GGATG 5 cut(s) 171, 267, 293, 963, 1836
BstMAI GTCTC 4 cut(s) 178, 1062, 1282, 1523
BstMCI CGRYCG 2 cut(s) 139, 259
BstMWI GCNNNNNNNGC 5 cut(s) 147, 424, 1714, 1819, 1969
BstNI CCWGG 3 cut(s) 934, 964, 1550
BstNSI RCATGY 1 cut(s) 1992
BstPI GGTNACC 1 cut(s) 1544
BstSCI CCNGG 5 cut(s) 89, 932, 962, 1442, 1548
BstSFI CTRYAG 4 cut(s) 75, 572, 688, 1709
BstV1I GCAGC 4 cut(s) 954, 1369, 1505, 1734
BstV2I GAAGAC 1 cut(s) 1449
BstX2I RGATCY 4 cut(s) 127, 563, 1722, 1773
BstYI RGATCY 4 cut(s) 127, 563, 1722, 1773
BstZ17I GTATAC 1 cut(s) 1677
BstZI CGGCCG 1 cut(s) 256
Bsu36I CCTNAGG 1 cut(s) 1240
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 7 cut(s) 258, 335, 677, 1337, 1556, 1919, 1950
BtgI CCRYGG 1 cut(s) 1000
BtsCI GGATG 5 cut(s) 171, 267, 293, 963, 1836
BtsI GCAGTG 2 cut(s) 827, 1724
BtsIMutI CAGTG 5 cut(s) 84, 266, 827, 999, 1724
Cac8I GCNNGC 3 cut(s) 51, 884, 1558
Cfr10I RCCGGY 2 cut(s) 49, 1556
Cfr13I GGNCC 4 cut(s) 466, 675, 1410, 1447
Csp6I GTAC 9 cut(s) 85, 123, 205, 245, 279, 746, 906, 1008, 1767
CviQI GTAC 9 cut(s) 85, 123, 205, 245, 279, 746, 906, 1008, 1767
DdeI CTNAG 7 cut(s) 167, 441, 1094, 1240, 1406, 1777, 1997
DraIII CACNNNGTG 1 cut(s) 1606
EaeI YGGCCR 2 cut(s) 256, 1335
EagI CGGCCG 1 cut(s) 256
EclXI CGGCCG 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 1461
Eco147I AGGCCT 1 cut(s) 1950
Eco47I GGWCC 3 cut(s) 466, 1410, 1447
Eco52I CGGCCG 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 1775
Eco81I CCTNAGG 1 cut(s) 1240
Eco91I GGTNACC 1 cut(s) 1544
EcoO109I RGGNCCY 1 cut(s) 1447
EcoO65I GGTNACC 1 cut(s) 1544
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 932, 962, 1548
EcoT14I CCWWGG 1 cut(s) 1461
ErhI CCWWGG 1 cut(s) 1461
FalI AAGNNNNNCTT 4 cut(s) 1573, 1605, 1951, 1983
FaqI GGGAC 6 cut(s) 386, 952, 1153, 1203, 1369, 1433
FauNDI CATATG 1 cut(s) 294
FblI GTMKAC 2 cut(s) 687, 1676
Fnu4HI GCNGC 6 cut(s) 678, 968, 1082, 1358, 1519, 1748
FokI GGATG 5 cut(s) 158, 274, 300, 970, 1843
Fsp4HI GCNGC 6 cut(s) 678, 968, 1082, 1358, 1519, 1748
FspBI CTAG 1 cut(s) 1702
GluI GCNGC 6 cut(s) 678, 968, 1082, 1358, 1519, 1748
GsuI CTGGAG 3 cut(s) 656, 1547, 1571
HaeIII GGCC 7 cut(s) 258, 335, 677, 1337, 1556, 1919, 1950
HapII CCGG 7 cut(s) 50, 91, 175, 259, 332, 1443, 1557
HincII GTYRAC 1 cut(s) 776
HindII GTYRAC 1 cut(s) 776
HindIII AAGCTT 2 cut(s) 549, 1171
HinfI GANTC 6 cut(s) 492, 531, 777, 809, 1056, 1184
HpaII CCGG 7 cut(s) 50, 91, 175, 259, 332, 1443, 1557
HphI GGTGA 6 cut(s) 36, 1121, 1202, 1333, 1618, 1693
Hpy166II GTNNAC 5 cut(s) 123, 247, 688, 776, 1677
Hpy188III TCNNGA 6 cut(s) 175, 316, 712, 1894, 1938, 1944
Hpy8I GTNNAC 5 cut(s) 123, 247, 688, 776, 1677
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 8 cut(s) 40, 631, 635, 1264, 1485, 1750, 1930, 1944
HpyCH4III ACNGT 9 cut(s) 79, 270, 312, 905, 913, 1004, 1681, 1853, 1908
HpyCH4IV ACGT 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 424, 1714, 1819, 1969
HpyF3I CTNAG 7 cut(s) 167, 441, 1094, 1240, 1406, 1777, 1997
HpySE526I ACGT 1 cut(s) 207
KflI GGGWCCC 1 cut(s) 1447
Kpn2I TCCGGA 1 cut(s) 174
KroI GCCGGC 2 cut(s) 49, 1556
KroNI GCCGGC 2 cut(s) 51, 1558
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 4 cut(s) 954, 1369, 1505, 1734
LweI GCATC 3 cut(s) 180, 462, 1821
MaeI CTAG 1 cut(s) 1702
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 5 cut(s) 153, 1321, 1544, 1881, 2019
MboII GAAGA 6 cut(s) 727, 850, 1449, 1581, 1638, 1783
MfeI CAATTG 1 cut(s) 1783
MflI RGATCY 4 cut(s) 127, 563, 1722, 1773
MlsI TGGCCA 1 cut(s) 1337
MluNI TGGCCA 1 cut(s) 1337
MlyI GAGTC 1 cut(s) 771
MmeI TCCRAC 2 cut(s) 252, 1954
Mox20I TGGCCA 1 cut(s) 1337
MreI CGCCGGCG 1 cut(s) 49
MroI TCCGGA 1 cut(s) 174
MroNI GCCGGC 2 cut(s) 49, 1556
MroXI GAANNNNTTC 1 cut(s) 1588
MscI TGGCCA 1 cut(s) 1337
MseI TTAA 8 cut(s) 547, 790, 973, 1043, 1154, 1192, 1330, 1562
MslI CAYNNNNRTG 4 cut(s) 500, 875, 1134, 1306
Msp20I TGGCCA 1 cut(s) 1337
MspCI CTTAAG 1 cut(s) 1561
MspI CCGG 7 cut(s) 50, 91, 175, 259, 332, 1443, 1557
MspR9I CCNGG 5 cut(s) 91, 934, 964, 1444, 1550
MunI CAATTG 1 cut(s) 1783
MvaI CCWGG 3 cut(s) 934, 964, 1550
MwoI GCNNNNNNNGC 5 cut(s) 147, 424, 1714, 1819, 1969
NaeI GCCGGC 2 cut(s) 51, 1558
NciI CCSGG 2 cut(s) 91, 1444
NdeI CATATG 1 cut(s) 294
NgoMIV GCCGGC 2 cut(s) 49, 1556
NlaIV GGNNCC 5 cut(s) 330, 1347, 1448, 1449, 1724
NmuCI GTSAC 1 cut(s) 1321
NspI RCATGY 1 cut(s) 1992
OliI CACNNNNGTG 1 cut(s) 1134
PceI AGGCCT 1 cut(s) 1950
PciI ACATGT 1 cut(s) 1988
PdiI GCCGGC 2 cut(s) 51, 1558
PdmI GAANNNNTTC 1 cut(s) 1588
PfeI GAWTC 5 cut(s) 492, 531, 809, 1056, 1184
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 6 cut(s) 679, 969, 1083, 1359, 1520, 1749
Ple19I CGATCG 1 cut(s) 139
PleI GAGTC 1 cut(s) 771
PpsI GAGTC 1 cut(s) 771
PpuMI RGGWCCY 1 cut(s) 1447
PscI ACATGT 1 cut(s) 1988
Psp5II RGGWCCY 1 cut(s) 1447
Psp6I CCWGG 3 cut(s) 932, 962, 1548
PspEI GGTNACC 1 cut(s) 1544
PspGI CCWGG 3 cut(s) 932, 962, 1548
PspN4I GGNNCC 5 cut(s) 330, 1347, 1448, 1449, 1724
PspPI GGNCC 4 cut(s) 466, 675, 1410, 1447
PspPPI RGGWCCY 1 cut(s) 1447
PsrI GAACNNNNNNTAC 2 cut(s) 1874, 1906
PsuI RGATCY 4 cut(s) 127, 563, 1722, 1773
PvuI CGATCG 1 cut(s) 139
RsaI GTAC 9 cut(s) 86, 124, 206, 246, 280, 747, 907, 1009, 1768
RsaNI GTAC 9 cut(s) 85, 123, 205, 245, 279, 746, 906, 1008, 1767
RseI CAYNNNNRTG 4 cut(s) 500, 875, 1134, 1306
SaqAI TTAA 8 cut(s) 547, 790, 973, 1043, 1154, 1192, 1330, 1562
SatI GCNGC 6 cut(s) 678, 968, 1082, 1358, 1519, 1748
Sau96I GGNCC 4 cut(s) 466, 675, 1410, 1447
SchI GAGTC 1 cut(s) 771
ScrFI CCNGG 5 cut(s) 91, 934, 964, 1444, 1550
SfaNI GCATC 3 cut(s) 180, 462, 1821
SfcI CTRYAG 4 cut(s) 75, 572, 688, 1709
SgrAI CRCCGGYG 1 cut(s) 49
SinI GGWCC 3 cut(s) 466, 1410, 1447
SmiMI CAYNNNNRTG 4 cut(s) 500, 875, 1134, 1306
SmlI CTYRAG 2 cut(s) 1561, 1952
SmoI CTYRAG 2 cut(s) 1561, 1952
SseBI AGGCCT 1 cut(s) 1950
SsiI CCGC 4 cut(s) 8, 47, 678, 1082
SspMI CTAG 1 cut(s) 1702
StuI AGGCCT 1 cut(s) 1950
StyD4I CCNGG 5 cut(s) 89, 932, 962, 1442, 1548
StyI CCWWGG 1 cut(s) 1461
TaaI ACNGT 9 cut(s) 79, 270, 312, 905, 913, 1004, 1681, 1853, 1908
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 146, 1379
TatI WGTACW 4 cut(s) 122, 278, 905, 1007
TauI GCSGC 2 cut(s) 680, 1084
TfiI GAWTC 5 cut(s) 492, 531, 809, 1056, 1184
Tru1I TTAA 8 cut(s) 547, 790, 973, 1043, 1154, 1192, 1330, 1562
Tru9I TTAA 8 cut(s) 547, 790, 973, 1043, 1154, 1192, 1330, 1562
TscAI CASTG 5 cut(s) 84, 273, 827, 999, 1724
TseFI GTSAC 1 cut(s) 1321
TseI GCWGC 4 cut(s) 967, 1357, 1518, 1747
Tsp45I GTSAC 1 cut(s) 1321
TspGWI ACGGA 3 cut(s) 513, 1095, 1177
TspRI CASTG 5 cut(s) 84, 273, 827, 999, 1724
Vha464I CTTAAG 1 cut(s) 1561
VpaK11BI GGWCC 3 cut(s) 466, 1410, 1447
XapI RAATTY 2 cut(s) 251, 1867
XceI RCATGY 1 cut(s) 1992
XmiI GTMKAC 2 cut(s) 687, 1676
XmnI GAANNNNTTC 1 cut(s) 1588
XspI CTAG 1 cut(s) 1702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.