Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009021

Physical Location & Seq

Genomic Coordinates Forward (+)

274733 .. 280527

Gene Structure 5795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGTTTTGCGGTTCAGAAGTCGAAGCGAAAGCCACATCCATGGAGGTTCATCTAAAACCTCTATGCAGCTCAACAGCTATCTTATCCCCCAAAGCTACCAATACTAGACTACCACAGTTACCACGCAAGTCCACTTCCTCTTCTGCTTCTCGTATATCCTACAATTTACCTTTCTCCACTACGCTTTCCACACCTTCTCGATTCTCTCCTTCTGTTTTATTTGCGACACCGGAGAGTCAAGTAAGCGCGGAGGTCGACACCAACGAAAGAGAATGGGCAATGCAAGATTTCTATACATTGAGAAGGGAGGTAGAAATTGCGGCAGTACGTGTTGAAGAGATAAGAGCTTCTGCTTGTCTGGAACAGTTAGAAAAAGAAGTTGCCGAGTTGGAATCCAAAGCAGCTGATAGCTCCTTTTGGGATGATCGAGCTAAGGCTCAAGAGAACCTTTTGGCCCTTACTGATGTCAAAGACAGAATAAAATCGCTTACTCACTTCAAAACACAGGTTGAAGATGCAGAAACAATAGTCAAGCTAACTGAAGAGATGGACTCCACAGATAATGCACTTCTTGAAGAGGCTGCCAGTATCATCAAGGAATTGAACAAGGGAATGGATCGGTTTGAGTTAACTCAACTTCTTTCAGGGCCTTATGACAAAGAAGGTGCTGTTATTTCTGTTACAGCCGGTGCTGGAGGCACTGACGCACAGGATTGGGCTGAAATGTTACTCAGGATGTATATGAGGTGGGGAGAAAAGCAGAGATACAAAACTCGAGTGGTTGAGAGATCCCCGGGAGAGGAAGCTGGAATTAAGTCGGCGACACTCGAAGTTGAAGGTCGTTATGCTTATGGTTATTTGTCTGGGGAGAAAGGCACACACCGCATTGTACGACAGTCTCCTTTTAATGCCAAAGGTCTTCGCCAGACAAGCTTCTCTGGTGTGGAAGTGATGCCTCTCCTACCTGAGGAATCACTGAAAGTTGAAATACCTGAAGAAGACCTGGAGATAACCACTTCAAGGGCAGGTGGGAAAGGAGGTCAGAATGTGAATAAAATTGAAAGTGCTGTCCGGATTACTCACATCCCCACTGGTGTTACTGTTCGCTGCACAGAAGAGAGATCCCAGCTTGCAAACAGAATAAAGGCTCTAAGCAGGTTGAAAGCGAAGCTGTTGGTGATAGCTGAGGAGCAACGAGCATCGGAAATTAAGCAAATACGAGGAGATGCAGTGAAGGCAGAGTGGGGGCAACAAATAAGGAACTATGTGTTCCATCCGTACAAACTCGTCAAGGATGTAAGGACAGGATATGAGACATCTGATATCACTTCTGTGATGGACGGTGATTTGGAGCCTTACATCAAAGCCTACCTCAAACATAAATACAGTATGAAAATCAGCGCATCAAGTACAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

472

Amino Acids

52.6

Weight (kDa)

5.8

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	123 - 315	2.1e-51	PCRF domain
RF-1	PF00472	326 - 434	2.9e-36	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27600
fragaria_vesca	FvH4_6g05910 FvH4_6g05910 FvH4_6g05910
prunus_persica	Prupe.3G211300_v2.0.a1 Prupe.6G325200_v2.0.a1 Prupe.6G325200_v2.0.a1 Prupe.6G325200_v2.0.a1 Prupe.6G325200_v2.0.a1 Prupe.8G000300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454921
rosa_multiflora	Rmu_sc0001792.1_g000009 Rmu_sc0002169.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424680
rosa_rugosa	Rorug03G0002900 Rorug03G0003000
rosa_samantha	Rh3AG062800 Rh3BG064700 Rh3CG063600 Rh3DG064700 Rh6AG155800
rosa_wichuraiana	Rw3G004910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1016
Acc36I	ACCTGC	2 cut(s)	1016, 1146
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	1071
AciI	CCGC	4 cut(s)	9, 248, 320, 883
AclWI	GGATC	3 cut(s)	624, 783, 1116
AcuI	CTGAAG	2 cut(s)	561, 1014
AfaI	GTAC	4 cut(s)	327, 891, 1280, 1411
AfiI	CCNNNNNNNGG	3 cut(s)	799, 967, 1020
AflIII	ACRYGT	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	1002
AleI	CACNNNNGTG	1 cut(s)	1331
Alw26I	GTCTC	2 cut(s)	903, 1307
AlwI	GGATC	3 cut(s)	624, 783, 1116
Ama87I	CYCGRG	2 cut(s)	774, 793
Aor13HI	TCCGGA	1 cut(s)	1071
AoxI	GGCC	2 cut(s)	453, 647
ApeKI	GCWGC	4 cut(s)	66, 401, 581, 1107
AspLEI	GCGC	2 cut(s)	248, 1403
AspS9I	GGNCC	2 cut(s)	454, 647
AsuC2I	CCSGG	2 cut(s)	794, 795
AsuHPI	GGTGA	2 cut(s)	1189, 1355
AvaI	CYCGRG	2 cut(s)	774, 793
AxyI	CCTNAGG	1 cut(s)	966
BbsI	GAAGAC	2 cut(s)	911, 1005
BbvCI	CCTCAGC	1 cut(s)	1185
BbvI	GCAGC	4 cut(s)	78, 413, 568, 1094
BccI	CCATC	3 cut(s)	541, 1281, 1330
BciT130I	CCWGG	1 cut(s)	1004
BcnI	CCSGG	2 cut(s)	794, 795
BcoDI	GTCTC	2 cut(s)	903, 1307
BfaI	CTAG	2 cut(s)	105, 1417
BfuAI	ACCTGC	2 cut(s)	1016, 1146
BisI	GCNGC	5 cut(s)	67, 321, 402, 582, 1108
BlsI	GCNGC	5 cut(s)	68, 322, 403, 583, 1109
Bme1390I	CCNGG	3 cut(s)	794, 795, 1004
BmeT110I	CYCGRG	2 cut(s)	774, 793
BmgT120I	GGNCC	2 cut(s)	454, 647
BmiI	GGNNCC	1 cut(s)	1353
BmrFI	CCNGG	3 cut(s)	794, 795, 1004
BmsI	GCATC	5 cut(s)	505, 942, 1208, 1216, 1412
BpiI	GAAGAC	2 cut(s)	911, 1005
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpmI	CTGGAG	2 cut(s)	714, 1025
Bpu10I	CCTNAGC	2 cut(s)	432, 1185
BpuEI	CTTGAG	1 cut(s)	423
BpuMI	CCSGG	2 cut(s)	794, 795
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	39, 792, 793
BsaWI	WCCGGW	2 cut(s)	229, 1071
BsaXI	ACNNNNNCTCC	2 cut(s)	1215, 1245
Bsc4I	CCNNNNNNNGG	3 cut(s)	799, 967, 1020
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	2 cut(s)	585, 1096
Bse21I	CCTNAGG	1 cut(s)	966
Bse3DI	GCAATG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	1071
BseBI	CCWGG	1 cut(s)	1004
BseDI	CCNNGG	3 cut(s)	39, 792, 793
BseGI	GGATG	6 cut(s)	35, 427, 741, 1083, 1273, 1300
BseLI	CCNNNNNNNGG	3 cut(s)	799, 967, 1020
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	745, 957, 1176
BseNI	ACTGG	2 cut(s)	585, 1096
BseRI	GAGGAG	2 cut(s)	1202, 1236
BseXI	GCAGC	4 cut(s)	78, 413, 568, 1094
BseYI	CCCAGC	1 cut(s)	1125
BsgI	GTGCAG	1 cut(s)	1093
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	455, 649
BsiHKCI	CYCGRG	2 cut(s)	774, 793
BsiSI	CCGG	4 cut(s)	230, 687, 794, 1072
BslI	CCNNNNNNNGG	3 cut(s)	799, 967, 1020
BsmAI	GTCTC	2 cut(s)	903, 1307
BsnI	GGCC	2 cut(s)	455, 649
BsoBI	CYCGRG	2 cut(s)	774, 793
Bsp13I	TCCGGA	1 cut(s)	1071
Bsp143I	GATC	4 cut(s)	424, 616, 788, 1121
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	4 cut(s)	9, 248, 320, 883
BspANI	GGCC	2 cut(s)	455, 649
BspCNI	CTCAG	3 cut(s)	744, 958, 1177
BspEI	TCCGGA	1 cut(s)	1071
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	1353
BspMI	ACCTGC	2 cut(s)	1016, 1146
BspPI	GGATC	3 cut(s)	624, 783, 1116
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	2 cut(s)	585, 1096
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	3 cut(s)	39, 792, 793
BssMI	GATC	4 cut(s)	424, 616, 788, 1121
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	1004
Bst4CI	ACNGT	6 cut(s)	117, 366, 897, 1102, 1343, 1388
Bst6I	CTCTTC	5 cut(s)	145, 330, 537, 570, 1110
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	1131
BstDEI	CTNAG	5 cut(s)	432, 731, 966, 1151, 1185
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	965
BstF5I	GGATG	6 cut(s)	35, 427, 741, 1083, 1273, 1300
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	2 cut(s)	248, 1403
BstKTI	GATC	4 cut(s)	427, 619, 791, 1124
BstMAI	GTCTC	2 cut(s)	903, 1307
BstMBI	GATC	4 cut(s)	424, 616, 788, 1121
BstMWI	GCNNNNNNNGC	3 cut(s)	882, 930, 1235
BstNI	CCWGG	1 cut(s)	1004
BstSCI	CCNGG	3 cut(s)	792, 793, 1002
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	4 cut(s)	78, 413, 568, 1094
BstV2I	GAAGAC	2 cut(s)	911, 1005
BstX2I	RGATCY	2 cut(s)	788, 1121
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	2 cut(s)	788, 1121
Bsu36I	CCTNAGG	1 cut(s)	966
BsuRI	GGCC	2 cut(s)	455, 649
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	6 cut(s)	35, 427, 741, 1083, 1273, 1300
BtsI	GCAGTG	1 cut(s)	1236
BtsIMutI	CAGTG	4 cut(s)	699, 974, 1089, 1236
BveI	ACCTGC	2 cut(s)	1016, 1146
Cac8I	GCNNGC	1 cut(s)	1131
CfoI	GCGC	2 cut(s)	248, 1403
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	2 cut(s)	454, 647
Cfr9I	CCCGGG	1 cut(s)	793
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	4 cut(s)	326, 890, 1279, 1410
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	4 cut(s)	326, 890, 1279, 1410
DdeI	CTNAG	5 cut(s)	432, 731, 966, 1151, 1185
DpnI	GATC	4 cut(s)	426, 618, 790, 1123
DpnII	GATC	4 cut(s)	424, 616, 788, 1121
Eam1104I	CTCTTC	5 cut(s)	145, 330, 537, 570, 1110
EarI	CTCTTC	5 cut(s)	145, 330, 537, 570, 1110
Eco130I	CCWWGG	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	1324
Eco57I	CTGAAG	2 cut(s)	561, 1014
Eco81I	CCTNAGG	1 cut(s)	966
Eco88I	CYCGRG	2 cut(s)	774, 793
EcoNI	CCTNNNNNAGG	1 cut(s)	965
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	1002
EcoRV	GATATC	1 cut(s)	1324
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	43
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	5 cut(s)	67, 321, 402, 582, 1108
FokI	GGATG	6 cut(s)	22, 434, 748, 1070, 1260, 1307
Fsp4HI	GCNGC	5 cut(s)	67, 321, 402, 582, 1108
FspBI	CTAG	2 cut(s)	105, 1417
GlaI	GCGC	2 cut(s)	247, 1402
GluI	GCNGC	5 cut(s)	67, 321, 402, 582, 1108
GsaI	CCCAGC	1 cut(s)	1129
GsuI	CTGGAG	2 cut(s)	714, 1025
HaeIII	GGCC	2 cut(s)	455, 649
HapII	CCGG	4 cut(s)	230, 687, 794, 1072
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	2 cut(s)	248, 1403
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	2 cut(s)	246, 1401
HinP1I	GCGC	2 cut(s)	246, 1401
HincII	GTYRAC	2 cut(s)	256, 630
HindII	GTYRAC	2 cut(s)	256, 630
HindIII	AAGCTT	1 cut(s)	931
HinfI	GANTC	5 cut(s)	201, 235, 392, 551, 971
HpaI	GTTAAC	1 cut(s)	630
HpaII	CCGG	4 cut(s)	230, 687, 794, 1072
HphI	GGTGA	2 cut(s)	1189, 1355
Hpy166II	GTNNAC	3 cut(s)	132, 256, 630
Hpy188I	TCNGA	4 cut(s)	16, 1044, 1204, 1321
Hpy188III	TCNNGA	6 cut(s)	198, 359, 440, 572, 733, 1072
Hpy8I	GTNNAC	3 cut(s)	132, 256, 630
HpyAV	CCTTC	6 cut(s)	204, 219, 297, 656, 830, 1228
HpyCH4III	ACNGT	6 cut(s)	117, 366, 897, 1102, 1343, 1388
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	7 cut(s)	66, 283, 518, 566, 1110, 1133, 1229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	882, 930, 1235
HpyF3I	CTNAG	5 cut(s)	432, 731, 966, 1151, 1185
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	2 cut(s)	246, 1401
Kpn2I	TCCGGA	1 cut(s)	1071
KspAI	GTTAAC	1 cut(s)	630
Kzo9I	GATC	4 cut(s)	424, 616, 788, 1121
LmnI	GCTCC	3 cut(s)	416, 1189, 1351
Lsp1109I	GCAGC	4 cut(s)	78, 413, 568, 1094
LweI	GCATC	5 cut(s)	505, 942, 1208, 1216, 1412
MaeI	CTAG	2 cut(s)	105, 1417
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	4 cut(s)	117, 679, 726, 1096
MalI	GATC	4 cut(s)	426, 618, 790, 1123
MboI	GATC	4 cut(s)	424, 616, 788, 1121
MboII	GAAGA	9 cut(s)	132, 347, 524, 554, 587, 911, 1007, 1010, 1127
MflI	RGATCY	2 cut(s)	788, 1121
MluCI	AATT	6 cut(s)	163, 315, 599, 810, 1056, 1206
MlyI	GAGTC	2 cut(s)	244, 545
MmeI	TCCRAC	1 cut(s)	369
MroI	TCCGGA	1 cut(s)	1071
MseI	TTAA	4 cut(s)	629, 813, 906, 1209
MslI	CAYNNNNRTG	2 cut(s)	38, 1331
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	4 cut(s)	230, 687, 794, 1072
MspR9I	CCNGG	3 cut(s)	794, 795, 1004
MvaI	CCWGG	1 cut(s)	1004
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	882, 930, 1235
NciI	CCSGG	2 cut(s)	794, 795
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	4 cut(s)	424, 616, 788, 1121
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	1353
NmeAIII	GCCGAG	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	1331
PaeR7I	CTCGAG	1 cut(s)	774
PaqCI	CACCTGC	1 cut(s)	1016
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	201, 392, 971
PkrI	GCNGC	5 cut(s)	68, 322, 403, 583, 1109
PleI	GAGTC	2 cut(s)	243, 545
PpsI	GAGTC	2 cut(s)	243, 545
Ppu21I	YACGTR	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	1002
PspFI	CCCAGC	1 cut(s)	1125
PspGI	CCWGG	1 cut(s)	1002
PspN4I	GGNNCC	1 cut(s)	1353
PspPI	GGNCC	2 cut(s)	454, 647
PspXI	VCTCGAGB	1 cut(s)	774
PsuI	RGATCY	2 cut(s)	788, 1121
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	4 cut(s)	327, 891, 1280, 1411
RsaNI	GTAC	4 cut(s)	326, 890, 1279, 1410
RseI	CAYNNNNRTG	2 cut(s)	38, 1331
SalI	GTCGAC	1 cut(s)	254
SaqAI	TTAA	4 cut(s)	629, 813, 906, 1209
SatI	GCNGC	5 cut(s)	67, 321, 402, 582, 1108
Sau3AI	GATC	4 cut(s)	424, 616, 788, 1121
Sau96I	GGNCC	2 cut(s)	454, 647
SchI	GAGTC	2 cut(s)	244, 545
ScrFI	CCNGG	3 cut(s)	794, 795, 1004
SfaNI	GCATC	5 cut(s)	505, 942, 1208, 1216, 1412
Sfr274I	CTCGAG	1 cut(s)	774
SlaI	CTCGAG	1 cut(s)	774
SmaI	CCCGGG	1 cut(s)	795
SmiMI	CAYNNNNRTG	2 cut(s)	38, 1331
SmlI	CTYRAG	2 cut(s)	438, 774
SmoI	CTYRAG	2 cut(s)	438, 774
Sse9I	AATT	6 cut(s)	163, 315, 599, 810, 1056, 1206
SsiI	CCGC	4 cut(s)	9, 248, 320, 883
SspMI	CTAG	2 cut(s)	105, 1417
StyD4I	CCNGG	3 cut(s)	792, 793, 1002
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	6 cut(s)	117, 366, 897, 1102, 1343, 1388
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	6 cut(s)	21, 199, 255, 427, 775, 828
TasI	AATT	6 cut(s)	163, 315, 599, 810, 1056, 1206
TatI	WGTACW	1 cut(s)	1409
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	3 cut(s)	201, 392, 971
Tru1I	TTAA	4 cut(s)	629, 813, 906, 1209
Tru9I	TTAA	4 cut(s)	629, 813, 906, 1209
TscAI	CASTG	4 cut(s)	706, 981, 1096, 1236
TseI	GCWGC	4 cut(s)	66, 401, 581, 1107
TspDTI	ATGAA	2 cut(s)	38, 1406
TspGWI	ACGGA	1 cut(s)	1266
TspMI	CCCGGG	1 cut(s)	793
TspRI	CASTG	4 cut(s)	706, 981, 1096, 1236
XagI	CCTNNNNNAGG	1 cut(s)	965
XhoI	CTCGAG	1 cut(s)	774
XmaI	CCCGGG	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	2 cut(s)	105, 1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.