Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002183.1

Orthogroup ID

OG0020069

Physical Location & Seq

Genomic Coordinates Forward (+)

92688 .. 94057

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002183.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggatgagcggtttaaggaggaaagtgaatattgtcatggtggcagtgatggattgcatggctatgttccttcacttgaccatgttgttgctgatactttcggagatttaattgctgatttagcccttgatgccactagaatagttggagtggacctcggccagggtttacgagaagtggatattaaaaagtacatcaaggttgagaaggttcctggtggccagttggaagattcagtggttctgaaaggagtaatgattaacaaagatgtcattgctcctggaaaaatgagaagaaagattgtcaatccgcggatcatgcttcttgattgtcctcttgagtataagaaaggcgagaaccaaacaaatgctgaagcaaaagagctcatctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

131

Amino Acids

14.54

Weight (kDa)

5.21

Isoelectric Point (pI)

21.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020069)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002183.1_g000023 Rmu_sc0019909.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026600 Rroxscaffold_6G00406910
rosa_samantha	Rh1CG017600 Rh1CG090300 Rh3BG167000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	10
AccII	CGCG	1 cut(s)	313
AciI	CCGC	3 cut(s)	10, 311, 313
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	2 cut(s)	160, 220
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	163
AjnI	CCWGG	3 cut(s)	162, 214, 280
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
Alw21I	GWGCWC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	160, 220
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	387
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	164, 216, 282
BfaI	CTAG	1 cut(s)	138
Bme1390I	CCNGG	3 cut(s)	164, 216, 282
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	3 cut(s)	164, 216, 282
BmsI	GCATC	1 cut(s)	121
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	3 cut(s)	157, 163, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	3 cut(s)	164, 216, 282
BseDI	CCNNGG	3 cut(s)	157, 163, 311
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	2 cut(s)	162, 222
BsiHKAI	GWGCWC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	163
BsnI	GGCC	2 cut(s)	162, 222
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	3 cut(s)	10, 311, 313
BspANI	GGCC	2 cut(s)	162, 222
BspFNI	CGCG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	323
BsrBI	CCGCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	3 cut(s)	157, 163, 311
BssMI	GATC	1 cut(s)	315
Bst2UI	CCWGG	3 cut(s)	164, 216, 282
BstDSI	CCRYGG	1 cut(s)	311
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 319
BstNI	CCWGG	3 cut(s)	164, 216, 282
BstSCI	CCNGG	3 cut(s)	162, 214, 280
BstUI	CGCG	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	162, 222
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 243
Cfr13I	GGNCC	1 cut(s)	154
Cfr42I	CCGCGG	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	4 cut(s)	38, 59, 83, 319
CviJI	RGCY	5 cut(s)	63, 125, 162, 222, 385
CviKI_1	RGCY	5 cut(s)	63, 125, 162, 222, 385
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
EaeI	YGGCCR	2 cut(s)	160, 220
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	385
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoRII	CCWGG	3 cut(s)	162, 214, 280
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	4 cut(s)	41, 62, 86, 322
FaiI	YATR	6 cut(s)	39, 60, 66, 84, 320, 345
FatI	CATG	4 cut(s)	37, 58, 82, 318
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	162, 222
Hin1II	CATG	4 cut(s)	41, 62, 86, 322
HinfI	GANTC	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	154, 170
Hpy188I	TCNGA	2 cut(s)	104, 246
Hpy188III	TCNNGA	2 cut(s)	326, 338
Hpy8I	GTNNAC	2 cut(s)	154, 170
HpyAV	CCTTC	2 cut(s)	81, 202
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 319
Hsp92II	CATG	4 cut(s)	41, 62, 86, 322
KspI	CCGCGG	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	149, 176, 201, 228, 236, 267, 294
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	138
MalI	GATC	1 cut(s)	317
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	1 cut(s)	315
MboII	GAAGA	2 cut(s)	242, 306
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	1 cut(s)	111
MluNI	TGGCCA	1 cut(s)	222
MmeI	TCCRAC	2 cut(s)	127, 207
MnlI	CCTC	3 cut(s)	13, 167, 345
Mox20I	TGGCCA	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	4 cut(s)	15, 110, 186, 261
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	313
MspR9I	CCNGG	3 cut(s)	164, 216, 282
MvaI	CCWGG	3 cut(s)	164, 216, 282
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 319
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	4 cut(s)	41, 62, 86, 322
NlaIV	GGNNCC	1 cut(s)	213
NmeAIII	GCCGAG	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	3 cut(s)	162, 214, 280
PspGI	CCWGG	3 cut(s)	162, 214, 280
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	387
SacII	CCGCGG	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	15, 110, 186, 261
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	3 cut(s)	164, 216, 282
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	4 cut(s)	159, 204, 213, 387
SfaNI	GCATC	1 cut(s)	121
Sfr303I	CCGCGG	1 cut(s)	314
SgrBI	CCGCGG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	3 cut(s)	10, 311, 313
SspI	AATATT	1 cut(s)	32
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	162, 214, 280
TasI	AATT	1 cut(s)	111
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	4 cut(s)	15, 110, 186, 261
Tru9I	TTAA	4 cut(s)	15, 110, 186, 261
TscAI	CASTG	2 cut(s)	52, 243
TspRI	CASTG	2 cut(s)	52, 243
VpaK11BI	GGWCC	1 cut(s)	154
XagI	CCTNNNNNAGG	1 cut(s)	161
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.