Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0020069

Physical Location & Seq

Genomic Coordinates Reverse (-)

33531497 .. 33532868

Gene Structure 1372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGATGAGCGGTTTAAGGAGGAAAGTGAATATTGTAAGTTTTTATCCGCCTTAGTTTTAGTCGGTTGTTTCCAATTTAATTCACGTAATCATTACATCTTGTGTTTTATCCGTTCAAAGATACTATCATTTTTGCTTGCATTTTTTTTCTTCCAAACTGCTAGTATTTCATGGTTTGATAGATTTGAATTGTTGCAGCGGCCATTTTATGAGCGGTGGAAGATGCTTGAGAAAGAGGTCATAGAGCCTCGGAGTTACAAGTTTGTTGTCAAGTATATAATGTTCGGATTCATTAACATTATATACTTGATGAGCATAGAACCCGTCACTCAGCAAAACGAAGGATGTAATCTTCTGGTTTACGAGAAGTGGATATTAAAAAGTACATCAAGGTTGAGAAGGTTCCTCGGTGGCCAGTTGGAAGATTCGGTGGTTCCGAAAGGAGTAATGATTAACAAAGATGTCATTGCTCCCGGAAAAATGAGAAGAAAGATTGTCAATCCGCGGATCATGCTTCTTGATTGTCCACTTGAGTATAAGAAAGGCGAGAACCAAACAAATGCTGAAGCAAAAGAGCTCATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

195

Amino Acids

23.28

Weight (kDa)

9.15

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	130 - 190	2.2e-09	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Orthologous Genes (Group: OG0020069)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002183.1_g000023 Rmu_sc0019909.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026600 Rroxscaffold_6G00406910
rosa_samantha	Rh1CG017600 Rh1CG090300 Rh3BG167000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	10, 214
AccII	CGCG	1 cut(s)	505
AciI	CCGC	6 cut(s)	10, 48, 199, 214, 503, 505
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	2 cut(s)	200, 412
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	117, 188
AluBI	AGCT	1 cut(s)	577
AluI	AGCT	1 cut(s)	577
Alw21I	GWGCWC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	515
AoxI	GGCC	2 cut(s)	200, 412
ApeKI	GCWGC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	474
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	197, 200
BlsI	GCNGC	2 cut(s)	198, 201
Bme1390I	CCNGG	1 cut(s)	474
BmiI	GGNNCC	2 cut(s)	404, 435
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	213
BpuEI	CTTGAG	2 cut(s)	248, 551
BpuMI	CCSGG	1 cut(s)	474
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	248, 406, 503
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	248, 406, 503
BseGI	GGATG	2 cut(s)	10, 350
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	2 cut(s)	202, 414
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	474
BsnI	GGCC	2 cut(s)	202, 414
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	1 cut(s)	507
BspACI	CCGC	6 cut(s)	10, 48, 199, 214, 503, 505
BspANI	GGCC	2 cut(s)	202, 414
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	404, 435
BspPI	GGATC	1 cut(s)	515
BsrBI	CCGCTC	2 cut(s)	10, 214
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	3 cut(s)	248, 406, 503
BssMI	GATC	1 cut(s)	507
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	52, 330
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	10, 350
BstFNI	CGCG	1 cut(s)	505
BstKTI	GATC	1 cut(s)	510
BstMBI	GATC	1 cut(s)	507
BstMWI	GCNNNNNNNGC	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	472
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	202, 414
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	10, 350
Cac8I	GCNNGC	1 cut(s)	138
Cfr42I	CCGCGG	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	2 cut(s)	171, 511
CviJI	RGCY	4 cut(s)	202, 247, 414, 577
CviKI_1	RGCY	4 cut(s)	202, 247, 414, 577
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	2 cut(s)	52, 330
DpnI	GATC	1 cut(s)	509
DpnII	GATC	1 cut(s)	507
EaeI	YGGCCR	2 cut(s)	200, 412
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	579
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	579
FaeI	CATG	2 cut(s)	174, 514
FatI	CATG	2 cut(s)	170, 510
Fnu4HI	GCNGC	2 cut(s)	197, 200
FokI	GGATG	2 cut(s)	17, 357
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	2 cut(s)	197, 200
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	197, 200
HaeIII	GGCC	2 cut(s)	202, 414
HapII	CCGG	1 cut(s)	474
Hin1II	CATG	2 cut(s)	174, 514
HinfI	GANTC	2 cut(s)	288, 425
HpaII	CCGG	1 cut(s)	474
Hpy166II	GTNNAC	2 cut(s)	361, 527
Hpy188I	TCNGA	3 cut(s)	252, 287, 438
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	2 cut(s)	361, 527
HpyAV	CCTTC	2 cut(s)	335, 393
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	140, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	511
HpyF3I	CTNAG	2 cut(s)	52, 330
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	174, 514
KspI	CCGCGG	1 cut(s)	506
Kzo9I	GATC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	475
LpnPI	CCDG	3 cut(s)	341, 428, 487
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	2 cut(s)	254, 325
MalI	GATC	1 cut(s)	509
MbiI	CCGCTC	2 cut(s)	10, 214
MboI	GATC	1 cut(s)	507
MboII	GAAGA	5 cut(s)	142, 232, 344, 434, 498
MhlI	GDGCHC	1 cut(s)	579
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	3 cut(s)	74, 79, 188
MluNI	TGGCCA	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	4 cut(s)	13, 229, 258, 416
Mox20I	TGGCCA	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	414
MseI	TTAA	5 cut(s)	15, 78, 294, 377, 453
Msp20I	TGGCCA	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	199, 505
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	1 cut(s)	511
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	1 cut(s)	507
NlaIII	CATG	2 cut(s)	174, 514
NlaIV	GGNNCC	2 cut(s)	404, 435
NmuCI	GTSAC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	288, 425
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	198, 201
Ppu21I	YACGTR	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	579
PspN4I	GGNNCC	2 cut(s)	404, 435
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	579
SacII	CCGCGG	1 cut(s)	506
SaqAI	TTAA	5 cut(s)	15, 78, 294, 377, 453
SatI	GCNGC	2 cut(s)	197, 200
Sau3AI	GATC	1 cut(s)	507
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	579
SetI	ASST	5 cut(s)	88, 240, 395, 404, 579
SfaNI	GCATC	1 cut(s)	213
Sfr303I	CCGCGG	1 cut(s)	506
SgrBI	CCGCGG	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	227, 530
SmoI	CTYRAG	2 cut(s)	227, 530
Sse9I	AATT	3 cut(s)	74, 79, 188
SsiI	CCGC	6 cut(s)	10, 48, 199, 214, 503, 505
SspI	AATATT	1 cut(s)	32
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	472
TaiI	ACGT	1 cut(s)	88
TasI	AATT	3 cut(s)	74, 79, 188
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	288, 425
Tru1I	TTAA	5 cut(s)	15, 78, 294, 377, 453
Tru9I	TTAA	5 cut(s)	15, 78, 294, 377, 453
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	159, 280
TspGWI	ACGGA	1 cut(s)	101
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.